data_VBB
# 
_chem_comp.id                                    VBB 
_chem_comp.name                                  "2-(dimethylamino)ethyl 5-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-2-methyl-4-(phenylmethyl)pyrazole-3-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H23 Cl N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-01 
_chem_comp.pdbx_modified_date                    2023-04-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        414.889 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VBB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8COT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VBB C02  C1  C  0 1 Y N N -26.139 3.954  0.694  -4.386 -0.227 -1.181 C02  VBB 1  
VBB C04  C2  C  0 1 Y N N -28.656 4.246  0.867  -2.477 0.784  -0.373 C04  VBB 2  
VBB C05  C3  C  0 1 Y N N -28.449 5.629  1.391  -3.262 1.533  0.505  C05  VBB 3  
VBB C06  C4  C  0 1 Y N N -27.059 6.132  1.553  -4.635 1.346  0.486  C06  VBB 4  
VBB C09  C5  C  0 1 Y N N -30.085 3.747  0.693  -1.003 0.947  -0.390 C09  VBB 5  
VBB C10  C6  C  0 1 Y N N -30.521 2.572  0.138  -0.065 -0.011 -0.818 C10  VBB 6  
VBB C11  C7  C  0 1 Y N N -31.893 2.572  0.192  1.170  0.588  -0.652 C11  VBB 7  
VBB C12  C8  C  0 1 Y N N -27.582 -0.369 2.543  0.778  -3.908 1.238  C12  VBB 8  
VBB C13  C9  C  0 1 Y N N -27.940 0.603  1.424  0.797  -3.009 0.188  C13  VBB 9  
VBB C14  C10 C  0 1 Y N N -29.267 0.478  0.690  -0.368 -2.373 -0.199 C14  VBB 10 
VBB C15  C11 C  0 1 Y N N -30.236 -0.631 1.078  -1.552 -2.635 0.464  C15  VBB 11 
VBB C16  C12 C  0 1 Y N N -29.879 -1.613 2.195  -1.571 -3.534 1.515  C16  VBB 12 
VBB C17  C13 C  0 1 Y N N -28.552 -1.478 2.930  -0.406 -4.170 1.902  C17  VBB 13 
VBB C18  C14 C  0 1 N N N -32.845 1.476  -0.306 2.482  -0.002 -0.956 C18  VBB 14 
VBB C21  C15 C  0 1 N N N -32.352 -0.032 -2.096 4.862  0.096  -1.124 C21  VBB 15 
VBB C22  C16 C  0 1 N N N -33.750 -0.270 -2.669 6.028  0.967  -0.651 C22  VBB 16 
VBB C24  C17 C  0 1 N N N -33.144 -0.752 -4.931 6.674  -0.299 1.309  C24  VBB 17 
VBB C25  C18 C  0 1 N N N -35.174 0.376  -4.475 6.823  2.117  1.325  C25  VBB 18 
VBB C26  C19 C  0 1 N N N -29.629 1.461  -0.429 -0.347 -1.394 -1.345 C26  VBB 19 
VBB C27  C20 C  0 1 N N N -33.628 4.173  1.032  1.962  2.823  0.180  C27  VBB 20 
VBB N01  N1  N  0 1 Y N N -25.936 5.308  1.208  -5.157 0.470  -0.359 N01  VBB 21 
VBB N03  N2  N  0 1 Y N N -27.507 3.434  0.525  -3.071 -0.079 -1.195 N03  VBB 22 
VBB N07  N3  N  0 1 Y N N -32.272 3.723  0.762  0.930  1.837  -0.149 N07  VBB 23 
VBB N08  N4  N  0 1 Y N N -31.140 4.451  1.068  -0.334 2.018  -0.014 N08  VBB 24 
VBB N23  N5  N  0 1 N N N -33.796 0.200  -4.048 6.085  0.953  0.817  N23  VBB 25 
VBB N28  N6  N  0 1 N N N -24.968 3.171  0.381  -4.970 -1.137 -2.045 N28  VBB 26 
VBB O19  O1  O  0 1 N N N -32.389 0.212  -0.714 3.609  0.688  -0.692 O19  VBB 27 
VBB O20  O2  O  0 1 N N N -34.005 1.701  -0.350 2.550  -1.113 -1.446 O20  VBB 28 
VBB CL29 CL1 CL 0 0 N N N -26.707 7.753  2.165  -5.659 2.251  1.556  CL29 VBB 29 
VBB H051 H1  H  0 0 N N N -29.293 6.252  1.647  -2.811 2.241  1.184  H051 VBB 30 
VBB H121 H2  H  0 0 N N N -26.640 -0.271 3.062  1.687  -4.408 1.537  H121 VBB 31 
VBB H131 H3  H  0 0 N N N -27.247 1.385  1.151  1.722  -2.804 -0.331 H131 VBB 32 
VBB H151 H4  H  0 0 N N N -31.180 -0.725 0.562  -2.462 -2.139 0.162  H151 VBB 33 
VBB H161 H5  H  0 0 N N N -30.567 -2.401 2.462  -2.496 -3.739 2.034  H161 VBB 34 
VBB H171 H6  H  0 0 N N N -28.299 -2.166 3.723  -0.422 -4.875 2.719  H171 VBB 35 
VBB H211 H7  H  0 0 N N N -31.734 -0.922 -2.284 4.876  0.030  -2.212 H211 VBB 36 
VBB H212 H8  H  0 0 N N N -31.904 0.838  -2.599 4.958  -0.903 -0.698 H212 VBB 37 
VBB H221 H9  H  0 0 N N N -34.491 0.280  -2.069 6.961  0.574  -1.055 H221 VBB 38 
VBB H222 H10 H  0 0 N N N -33.980 -1.345 -2.640 5.883  1.989  -1.000 H222 VBB 39 
VBB H243 H11 H  0 0 N N N -32.100 -0.891 -4.614 6.705  -0.283 2.398  H243 VBB 40 
VBB H242 H12 H  0 0 N N N -33.672 -1.716 -4.885 6.068  -1.142 0.975  H242 VBB 41 
VBB H241 H13 H  0 0 N N N -33.167 -0.370 -5.962 7.687  -0.403 0.919  H241 VBB 42 
VBB H252 H14 H  0 0 N N N -35.675 1.096  -3.811 7.836  2.109  0.924  H252 VBB 43 
VBB H251 H15 H  0 0 N N N -35.192 0.755  -5.507 6.317  3.032  1.015  H251 VBB 44 
VBB H253 H16 H  0 0 N N N -35.698 -0.590 -4.430 6.863  2.075  2.414  H253 VBB 45 
VBB H261 H17 H  0 0 N N N -30.169 0.928  -1.226 -1.315 -1.402 -1.847 H261 VBB 46 
VBB H262 H18 H  0 0 N N N -28.710 1.903  -0.841 0.431  -1.679 -2.052 H262 VBB 47 
VBB H273 H19 H  0 0 N N N -33.598 5.164  1.508  2.242  3.370  -0.721 H273 VBB 48 
VBB H272 H20 H  0 0 N N N -34.188 4.237  0.087  1.574  3.521  0.922  H272 VBB 49 
VBB H271 H21 H  0 0 N N N -34.124 3.458  1.705  2.837  2.314  0.583  H271 VBB 50 
VBB H282 H23 H  0 0 N N N -25.248 2.270  0.050  -5.933 -1.259 -2.043 H282 VBB 51 
VBB H281 H24 H  0 0 N N N -24.436 3.635  -0.327 -4.418 -1.654 -2.652 H281 VBB 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VBB C24 N23  SING N N 1  
VBB C25 N23  SING N N 2  
VBB N23 C22  SING N N 3  
VBB C22 C21  SING N N 4  
VBB C21 O19  SING N N 5  
VBB O19 C18  SING N N 6  
VBB C26 C10  SING N N 7  
VBB C26 C14  SING N N 8  
VBB O20 C18  DOUB N N 9  
VBB C18 C11  SING N N 10 
VBB C10 C11  DOUB Y N 11 
VBB C10 C09  SING Y N 12 
VBB C11 N07  SING Y N 13 
VBB N28 C02  SING N N 14 
VBB N03 C02  DOUB Y N 15 
VBB N03 C04  SING Y N 16 
VBB C14 C15  DOUB Y N 17 
VBB C14 C13  SING Y N 18 
VBB C09 C04  SING N N 19 
VBB C09 N08  DOUB Y N 20 
VBB C02 N01  SING Y N 21 
VBB N07 C27  SING N N 22 
VBB N07 N08  SING Y N 23 
VBB C04 C05  DOUB Y N 24 
VBB C15 C16  SING Y N 25 
VBB N01 C06  DOUB Y N 26 
VBB C05 C06  SING Y N 27 
VBB C13 C12  DOUB Y N 28 
VBB C06 CL29 SING N N 29 
VBB C16 C17  DOUB Y N 30 
VBB C12 C17  SING Y N 31 
VBB C05 H051 SING N N 32 
VBB C12 H121 SING N N 33 
VBB C13 H131 SING N N 34 
VBB C15 H151 SING N N 35 
VBB C16 H161 SING N N 36 
VBB C17 H171 SING N N 37 
VBB C21 H211 SING N N 38 
VBB C21 H212 SING N N 39 
VBB C22 H221 SING N N 40 
VBB C22 H222 SING N N 41 
VBB C24 H243 SING N N 42 
VBB C24 H242 SING N N 43 
VBB C24 H241 SING N N 44 
VBB C25 H252 SING N N 45 
VBB C25 H251 SING N N 46 
VBB C25 H253 SING N N 47 
VBB C26 H261 SING N N 48 
VBB C26 H262 SING N N 49 
VBB C27 H273 SING N N 50 
VBB C27 H272 SING N N 51 
VBB C27 H271 SING N N 52 
VBB N28 H282 SING N N 53 
VBB N28 H281 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VBB InChI            InChI                1.06  "InChI=1S/C20H23ClN6O2/c1-26(2)9-10-29-19(28)18-14(11-13-7-5-4-6-8-13)17(25-27(18)3)15-12-16(21)24-20(22)23-15/h4-8,12H,9-11H2,1-3H3,(H2,22,23,24)" 
VBB InChIKey         InChI                1.06  DNOCFTKJMRTNST-UHFFFAOYSA-N                                                                                                                         
VBB SMILES_CANONICAL CACTVS               3.385 "CN(C)CCOC(=O)c1n(C)nc(c1Cc2ccccc2)c3cc(Cl)nc(N)n3"                                                                                                 
VBB SMILES           CACTVS               3.385 "CN(C)CCOC(=O)c1n(C)nc(c1Cc2ccccc2)c3cc(Cl)nc(N)n3"                                                                                                 
VBB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c(c(c(n1)c2cc(nc(n2)N)Cl)Cc3ccccc3)C(=O)OCCN(C)C"                                                                                               
VBB SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1c(c(c(n1)c2cc(nc(n2)N)Cl)Cc3ccccc3)C(=O)OCCN(C)C"                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           VBB 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-(dimethylamino)ethyl 5-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-2-methyl-4-(phenylmethyl)pyrazole-3-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VBB "Create component" 2023-03-01 PDBE 
VBB "Initial release"  2023-04-26 RCSB 
# 
