data_UMB
#

_chem_comp.id                                   UMB
_chem_comp.name                                 "6-benzyl-N4-((1r,3r)-3-hydroxycyclobutyl)-N2-methylpyridine-2,4-dicarboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H21 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "~{N}2-methyl-~{N}4-(3-oxidanylcyclobutyl)-6-(phenylmethyl)pyridine-2,4-dicarboxamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-02
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       339.388
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UMB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7NQ9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UMB  N1   N1   N  0  1  Y  N  N  41.355  17.403   8.535  -1.766   0.541  -0.706  N1   UMB   1  
UMB  C4   C1   C  0  1  Y  N  N  44.049  17.476   9.279   0.833  -0.336  -0.581  C4   UMB   2  
UMB  C5   C2   C  0  1  Y  N  N  43.106  18.271   9.917  -0.199  -1.187  -0.987  C5   UMB   3  
UMB  C6   C3   C  0  1  Y  N  N  41.782  18.212   9.523  -1.495  -0.702  -1.035  C6   UMB   4  
UMB  C7   C4   C  0  1  N  N  N  40.723  19.040  10.209  -2.613  -1.614  -1.471  C7   UMB   5  
UMB  C8   C5   C  0  1  Y  N  N  40.196  18.313  11.424  -3.683  -1.640  -0.411  C8   UMB   6  
UMB  C10  C6   C  0  1  Y  N  N  38.743  16.661  12.401  -4.610  -2.599   1.578  C10  UMB   7  
UMB  C13  C7   C  0  1  Y  N  N  40.730  18.549  12.681  -4.721  -0.728  -0.454  C13  UMB   8  
UMB  C15  C8   C  0  1  N  N  N  47.687  16.573   9.903   4.599  -0.454  -0.057  C15  UMB   9  
UMB  C17  C9   C  0  1  N  N  N  49.119  15.323  10.916   6.451  -0.056   0.892  C17  UMB  10  
UMB  O1   O1   O  0  1  N  N  N  45.849  18.595  10.353   2.497  -1.963  -0.817  O1   UMB  11  
UMB  C14  C10  C  0  1  N  N  N  45.469  17.597   9.739   2.233  -0.816  -0.515  C14  UMB  12  
UMB  N2   N2   N  0  1  N  N  N  46.292  16.576   9.474   3.214   0.021  -0.122  N2   UMB  13  
UMB  C18  C11  C  0  1  N  N  N  48.570  15.390   9.483   5.118  -0.651   1.377  C18  UMB  14  
UMB  O2   O2   O  0  1  N  N  N  50.450  15.766  11.180   7.359  -1.031   0.376  O2   UMB  15  
UMB  C16  C12  C  0  1  N  N  N  47.936  16.187  11.366   5.641   0.668  -0.196  C16  UMB  16  
UMB  C3   C13  C  0  1  Y  N  N  43.625  16.634   8.254   0.508   0.980  -0.238  C3   UMB  17  
UMB  C2   C14  C  0  1  Y  N  N  42.267  16.629   7.922  -0.821   1.386  -0.314  C2   UMB  18  
UMB  C1   C15  C  0  1  N  N  N  41.771  15.713   6.837  -1.184   2.777   0.045  C1   UMB  19  
UMB  O    O3   O  0  1  N  N  N  42.497  14.844   6.352  -0.323   3.556   0.404  O    UMB  20  
UMB  N    N3   N  0  1  N  N  N  40.509  15.906   6.460  -2.468   3.178  -0.026  N    UMB  21  
UMB  C    C16  C  0  1  N  N  N  39.814  14.988   5.575  -2.827   4.553   0.329  C    UMB  22  
UMB  C12  C17  C  0  1  Y  N  N  40.280  17.844  13.785  -5.703  -0.751   0.518  C12  UMB  23  
UMB  C11  C18  C  0  1  Y  N  N  39.288  16.897  13.645  -5.647  -1.686   1.535  C11  UMB  24  
UMB  C9   C19  C  0  1  Y  N  N  39.194  17.364  11.299  -3.631  -2.579   0.603  C9   UMB  25  
UMB  H1   H1   H  0  1  N  N  N  43.405  18.932  10.717   0.013  -2.211  -1.259  H1   UMB  26  
UMB  H2   H2   H  0  1  N  N  N  41.159  20.000  10.521  -3.036  -1.248  -2.406  H2   UMB  27  
UMB  H3   H3   H  0  1  N  N  N  39.895  19.224   9.508  -2.223  -2.622  -1.618  H3   UMB  28  
UMB  H4   H4   H  0  1  N  N  N  37.961  15.925  12.287  -4.566  -3.329   2.372  H4   UMB  29  
UMB  H5   H5   H  0  1  N  N  N  41.506  19.291  12.801  -4.765   0.003  -1.248  H5   UMB  30  
UMB  H6   H6   H  0  1  N  N  N  48.184  17.526   9.667   4.785  -1.306  -0.710  H6   UMB  31  
UMB  H7   H7   H  0  1  N  N  N  48.976  14.302  11.300   6.917   0.618   1.611  H7   UMB  32  
UMB  H8   H8   H  0  1  N  N  N  45.940  15.790   8.966   3.003   0.936   0.119  H8   UMB  33  
UMB  H9   H9   H  0  1  N  N  N  48.010  14.496   9.170   4.607  -0.033   2.115  H9   UMB  34  
UMB  H10  H10  H  0  1  N  N  N  49.324  15.636   8.721   5.190  -1.696   1.676  H10  UMB  35  
UMB  H11  H11  H  0  1  N  N  N  50.641  15.662  12.105   7.871  -1.490   1.056  H11  UMB  36  
UMB  H12  H12  H  0  1  N  N  N  48.214  17.031  12.015   6.135   0.687  -1.168  H12  UMB  37  
UMB  H13  H13  H  0  1  N  N  N  47.114  15.622  11.830   5.273   1.647   0.112  H13  UMB  38  
UMB  H14  H14  H  0  1  N  N  N  44.326  16.002   7.730   1.276   1.669   0.081  H14  UMB  39  
UMB  H15  H15  H  0  1  N  N  N  40.022  16.712   6.798  -3.155   2.556  -0.312  H15  UMB  40  
UMB  H16  H16  H  0  1  N  N  N  38.789  15.348   5.404  -2.548   4.745   1.365  H16  UMB  41  
UMB  H17  H17  H  0  1  N  N  N  40.348  14.930   4.615  -2.298   5.247  -0.324  H17  UMB  42  
UMB  H18  H18  H  0  1  N  N  N  39.779  13.990   6.036  -3.902   4.690   0.211  H18  UMB  43  
UMB  H19  H19  H  0  1  N  N  N  40.707  18.037  14.758  -6.514  -0.038   0.484  H19  UMB  44  
UMB  H20  H20  H  0  1  N  N  N  38.940  16.343  14.505  -6.412  -1.702   2.297  H20  UMB  45  
UMB  H21  H21  H  0  1  N  N  N  38.760  17.171  10.329  -2.822  -3.294   0.634  H21  UMB  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UMB  C    N    SING  N  N   1  
UMB  O    C1   DOUB  N  N   2  
UMB  N    C1   SING  N  N   3  
UMB  C1   C2   SING  N  N   4  
UMB  C2   C3   DOUB  Y  N   5  
UMB  C2   N1   SING  Y  N   6  
UMB  C3   C4   SING  Y  N   7  
UMB  N1   C6   DOUB  Y  N   8  
UMB  C4   C14  SING  N  N   9  
UMB  C4   C5   DOUB  Y  N  10  
UMB  N2   C14  SING  N  N  11  
UMB  N2   C15  SING  N  N  12  
UMB  C18  C15  SING  N  N  13  
UMB  C18  C17  SING  N  N  14  
UMB  C6   C5   SING  Y  N  15  
UMB  C6   C7   SING  N  N  16  
UMB  C14  O1   DOUB  N  N  17  
UMB  C15  C16  SING  N  N  18  
UMB  C7   C8   SING  N  N  19  
UMB  C17  O2   SING  N  N  20  
UMB  C17  C16  SING  N  N  21  
UMB  C9   C8   DOUB  Y  N  22  
UMB  C9   C10  SING  Y  N  23  
UMB  C8   C13  SING  Y  N  24  
UMB  C10  C11  DOUB  Y  N  25  
UMB  C13  C12  DOUB  Y  N  26  
UMB  C11  C12  SING  Y  N  27  
UMB  C5   H1   SING  N  N  28  
UMB  C7   H2   SING  N  N  29  
UMB  C7   H3   SING  N  N  30  
UMB  C10  H4   SING  N  N  31  
UMB  C13  H5   SING  N  N  32  
UMB  C15  H6   SING  N  N  33  
UMB  C17  H7   SING  N  N  34  
UMB  N2   H8   SING  N  N  35  
UMB  C18  H9   SING  N  N  36  
UMB  C18  H10  SING  N  N  37  
UMB  O2   H11  SING  N  N  38  
UMB  C16  H12  SING  N  N  39  
UMB  C16  H13  SING  N  N  40  
UMB  C3   H14  SING  N  N  41  
UMB  N    H15  SING  N  N  42  
UMB  C    H16  SING  N  N  43  
UMB  C    H17  SING  N  N  44  
UMB  C    H18  SING  N  N  45  
UMB  C12  H19  SING  N  N  46  
UMB  C11  H20  SING  N  N  47  
UMB  C9   H21  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UMB  InChI             InChI                 1.03   "InChI=1S/C19H21N3O3/c1-20-19(25)17-9-13(18(24)22-15-10-16(23)11-15)8-14(21-17)7-12-5-3-2-4-6-12/h2-6,8-9,15-16,23H,7,10-11H2,1H3,(H,20,25)(H,22,24)/t15-,16-"  
UMB  InChIKey          InChI                 1.03   FQRNJZDJWMGBEX-WKILWMFISA-N  
UMB  SMILES_CANONICAL  CACTVS                3.385  "CNC(=O)c1cc(cc(Cc2ccccc2)n1)C(=O)N[C@@H]3C[C@@H](O)C3"  
UMB  SMILES            CACTVS                3.385  "CNC(=O)c1cc(cc(Cc2ccccc2)n1)C(=O)N[CH]3C[CH](O)C3"  
UMB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CNC(=O)c1cc(cc(n1)Cc2ccccc2)C(=O)NC3CC(C3)O"  
UMB  SMILES            "OpenEye OEToolkits"  2.0.7  "CNC(=O)c1cc(cc(n1)Cc2ccccc2)C(=O)NC3CC(C3)O"  
#
_pdbx_chem_comp_identifier.comp_id          UMB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}2-methyl-~{N}4-(3-oxidanylcyclobutyl)-6-(phenylmethyl)pyridine-2,4-dicarboxamide"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     UMB
_pdbx_chem_comp_synonyms.name        "~{N}2-methyl-~{N}4-(3-oxidanylcyclobutyl)-6-(phenylmethyl)pyridine-2,4-dicarboxamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UMB  "Create component"  2021-03-02  PDBE  
UMB  "Initial release"   2021-03-24  RCSB  
##
