data_UFB
# 
_chem_comp.id                                    UFB 
_chem_comp.name                                  
;2'-F,4'-beta-OMe Uridine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 F N2 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-04-06 
_chem_comp.pdbx_modified_date                    2018-08-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        356.198 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UFB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CY0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UFB "C1'" C1  C 0 1 N N R 15.452 -14.588 4.405  1.373  -1.192 -0.894 "C1'" UFB 1  
UFB C2    C2  C 0 1 N N N 13.172 -14.412 5.278  2.926  0.648  -1.231 C2    UFB 2  
UFB "C2'" C3  C 0 1 N N R 16.205 -15.751 5.055  1.304  -2.412 0.051  "C2'" UFB 3  
UFB "C3'" C4  C 0 1 N N R 16.121 -16.769 3.964  0.100  -2.108 0.970  "C3'" UFB 4  
UFB C4    C5  C 0 1 N N N 11.210 -14.668 3.885  4.093  1.648  0.528  C4    UFB 5  
UFB "C4'" C6  C 0 1 N N S 16.460 -15.910 2.735  -0.417 -0.740 0.471  "C4'" UFB 6  
UFB C5    C7  C 0 1 N N N 12.033 -14.893 2.790  3.461  0.765  1.436  C5    UFB 7  
UFB "C5'" C8  C 0 1 N N N 17.979 -15.755 2.543  -1.944 -0.693 0.534  "C5'" UFB 8  
UFB C6    C9  C 0 1 N N N 13.415 -14.874 2.954  2.586  -0.148 0.962  C6    UFB 9  
UFB CM    C10 C 0 1 N N N 15.973 -15.753 0.385  -0.097 1.622  0.720  CM    UFB 10 
UFB "F2'" F1  F 0 1 N N N 17.484 -15.377 5.244  1.081  -3.585 -0.679 "F2'" UFB 11 
UFB N1    N1  N 0 1 N N N 13.973 -14.650 4.226  2.322  -0.201 -0.380 N1    UFB 12 
UFB N3    N2  N 0 1 N N N 11.782 -14.426 5.133  3.806  1.564  -0.786 N3    UFB 13 
UFB O2    O1  O 0 1 N N N 13.651 -14.195 6.390  2.676  0.584  -2.419 O2    UFB 14 
UFB "O3'" O2  O 0 1 N N N 17.130 -17.802 4.091  -0.909 -3.109 0.820  "O3'" UFB 15 
UFB O4    O3  O 0 1 N N N 9.986  -14.678 3.765  4.889  2.477  0.932  O4    UFB 16 
UFB "O4'" O4  O 0 1 N N N 15.997 -14.552 3.049  0.033  -0.653 -0.898 "O4'" UFB 17 
UFB "O5'" O5  O 0 1 N N N 18.581 -15.182 3.700  -2.409 0.513  -0.076 "O5'" UFB 18 
UFB OM    O6  O 0 1 N N N 15.919 -16.562 1.564  0.147  0.318  1.249  OM    UFB 19 
UFB OP1   O7  O 0 1 N N N 20.966 -15.220 4.638  -4.131 2.249  -1.042 OP1   UFB 20 
UFB OP2   O8  O 0 1 N N N 20.560 -14.900 2.115  -4.699 -0.204 -0.860 OP2   UFB 21 
UFB P     P1  P 0 1 N N N 20.074 -14.613 3.622  -3.969 0.894  -0.187 P     UFB 22 
UFB OP3   O9  O 0 1 N Y N 19.916 -13.034 3.874  -4.575 1.116  1.288  OP3   UFB 23 
UFB "H1'" H1  H 0 1 N N N 15.714 -13.659 4.933  1.659  -1.505 -1.898 "H1'" UFB 24 
UFB "H2'" H2  H 0 1 N N N 15.696 -16.092 5.968  2.221  -2.495 0.634  "H2'" UFB 25 
UFB "H3'" H3  H 0 1 N N N 15.107 -17.187 3.881  0.420  -2.042 2.009  "H3'" UFB 26 
UFB H5    H4  H 0 1 N N N 11.604 -15.082 1.817  3.678  0.817  2.492  H5    UFB 27 
UFB "H5'" H5  H 0 1 N N N 18.422 -16.745 2.359  -2.357 -1.551 0.003  "H5'" UFB 28 
UFB H5S   H6  H 0 1 N N N 18.168 -15.102 1.678  -2.266 -0.721 1.575  H5S   UFB 29 
UFB H6    H7  H 0 1 N N N 14.061 -15.032 2.103  2.094  -0.831 1.639  H6    UFB 30 
UFB HM3   H8  H 0 1 N N N 15.547 -16.310 -0.462 0.469  2.358  1.290  HM3   UFB 31 
UFB HM1   H9  H 0 1 N N N 15.394 -14.831 0.546  0.213  1.655  -0.325 HM1   UFB 32 
UFB HM2   H10 H 0 1 N N N 17.019 -15.495 0.165  -1.161 1.849  0.790  HM2   UFB 33 
UFB H3    H11 H 0 1 N N N 11.196 -14.262 5.927  4.236  2.165  -1.414 H3    UFB 34 
UFB H1    H12 H 0 1 N N N 16.936 -18.344 4.847  -0.618 -4.000 1.062  H1    UFB 35 
UFB H2    H13 H 0 1 N N N 21.677 -15.677 4.204  -5.047 2.539  -1.150 H2    UFB 36 
UFB HOP3  H14 H 0 0 N Y N 20.141 -12.562 3.081  -4.143 1.822  1.788  HOP3  UFB 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UFB CM    OM    SING N N 1  
UFB OM    "C4'" SING N N 2  
UFB OP2   P     DOUB N N 3  
UFB "C5'" "C4'" SING N N 4  
UFB "C5'" "O5'" SING N N 5  
UFB "C4'" "O4'" SING N N 6  
UFB "C4'" "C3'" SING N N 7  
UFB C5    C6    DOUB N N 8  
UFB C5    C4    SING N N 9  
UFB C6    N1    SING N N 10 
UFB "O4'" "C1'" SING N N 11 
UFB P     "O5'" SING N N 12 
UFB P     OP1   SING N N 13 
UFB O4    C4    DOUB N N 14 
UFB C4    N3    SING N N 15 
UFB "C3'" "O3'" SING N N 16 
UFB "C3'" "C2'" SING N N 17 
UFB N1    "C1'" SING N N 18 
UFB N1    C2    SING N N 19 
UFB "C1'" "C2'" SING N N 20 
UFB "C2'" "F2'" SING N N 21 
UFB N3    C2    SING N N 22 
UFB C2    O2    DOUB N N 23 
UFB P     OP3   SING N N 24 
UFB "C1'" "H1'" SING N N 25 
UFB "C2'" "H2'" SING N N 26 
UFB "C3'" "H3'" SING N N 27 
UFB C5    H5    SING N N 28 
UFB "C5'" "H5'" SING N N 29 
UFB "C5'" H5S   SING N N 30 
UFB C6    H6    SING N N 31 
UFB CM    HM3   SING N N 32 
UFB CM    HM1   SING N N 33 
UFB CM    HM2   SING N N 34 
UFB N3    H3    SING N N 35 
UFB "O3'" H1    SING N N 36 
UFB OP1   H2    SING N N 37 
UFB OP3   HOP3  SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UFB SMILES           ACDLabs              12.01 "C1(C(F)C(O)C(O1)(COP(O)(=O)O)OC)N2C(=O)NC(C=C2)=O"                                                                                                           
UFB InChI            InChI                1.03  "InChI=1S/C10H14FN2O9P/c1-20-10(4-21-23(17,18)19)7(15)6(11)8(22-10)13-3-2-5(14)12-9(13)16/h2-3,6-8,15H,4H2,1H3,(H,12,14,16)(H2,17,18,19)/t6-,7+,8-,10+/m1/s1" 
UFB InChIKey         InChI                1.03  ZYOWQXVTIIKUDO-JIOCBJNQSA-N                                                                                                                                   
UFB SMILES_CANONICAL CACTVS               3.385 "CO[C@@]1(CO[P](O)(O)=O)O[C@H]([C@H](F)[C@@H]1O)N2C=CC(=O)NC2=O"                                                                                              
UFB SMILES           CACTVS               3.385 "CO[C]1(CO[P](O)(O)=O)O[CH]([CH](F)[CH]1O)N2C=CC(=O)NC2=O"                                                                                                    
UFB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CO[C@@]1([C@H]([C@H]([C@@H](O1)N2C=CC(=O)NC2=O)F)O)COP(=O)(O)O"                                                                                              
UFB SMILES           "OpenEye OEToolkits" 2.0.6 "COC1(C(C(C(O1)N2C=CC(=O)NC2=O)F)O)COP(=O)(O)O"                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UFB "SYSTEMATIC NAME" ACDLabs              12.01 "[(2S,3R,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-fluoro-3-hydroxy-2-methoxytetrahydrofuran-2-yl]methyl dihydrogen phosphate (non-preferred name)" 
UFB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{S},3~{R},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-fluoranyl-2-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"                 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UFB "Create component" 2018-04-06 RCSB 
UFB "Modify name"      2018-04-12 RCSB 
UFB "Initial release"  2018-08-29 RCSB 
# 
