data_U8B
#

_chem_comp.id                                   U8B
_chem_comp.name                                 "(2~{S})-2-azanyl-5-[[(2~{R})-3-[(2~{R},5~{R})-5-(hydroxymethyl)-3,6-bis(oxidanylidene)-2-(phenylmethyl)-5-sulfanyl-piperazin-2-yl]sulfanyl-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H29 N5 O9 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-28
_chem_comp.pdbx_modified_date                   2021-05-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       571.624
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U8B
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7NC6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U8B  C4   C1   C  0  1  N  N  N  -12.804   1.947  56.551   1.988  -3.446   1.401  C4   U8B   1  
U8B  C5   C2   C  0  1  N  N  R  -13.751   3.118  56.763   2.096  -2.007   0.892  C5   U8B   2  
U8B  C7   C3   C  0  1  N  N  N  -16.573   3.793  55.856   0.767   0.443   0.347  C7   U8B   3  
U8B  C8   C4   C  0  1  N  N  R  -17.407   4.375  56.995  -0.506   1.283   0.468  C8   U8B   4  
U8B  C10  C5   C  0  1  N  N  N  -17.430   3.123  59.085  -2.884   0.835   0.177  C10  U8B   5  
U8B  C13  C6   C  0  1  N  N  N  -17.589   2.075  61.315  -5.349   0.579   0.103  C13  U8B   6  
U8B  C21  C7   C  0  1  N  N  N  -19.337   6.943  54.941   0.898   4.744  -0.371  C21  U8B   7  
U8B  C22  C8   C  0  1  N  N  N  -18.730   8.161  54.261   2.036   5.456   0.313  C22  U8B   8  
U8B  O18  O1   O  0  1  N  N  N  -19.045  -0.801  60.783  -8.528   1.046  -0.394  O18  U8B   9  
U8B  C16  C9   C  0  1  N  N  N  -18.095  -0.437  61.509  -7.801   0.210   0.089  C16  U8B  10  
U8B  O17  O2   O  0  1  N  N  N  -17.106  -1.135  61.814  -8.149  -0.402   1.232  O17  U8B  11  
U8B  C14  C10  C  0  1  N  N  S  -18.202   0.966  62.143  -6.504  -0.145  -0.592  C14  U8B  12  
U8B  N15  N1   N  0  1  N  N  N  -17.567   0.967  63.474  -6.563   0.266  -2.001  N15  U8B  13  
U8B  C12  C11  C  0  1  N  N  N  -17.934   1.882  59.857  -4.022   0.123  -0.507  C12  U8B  14  
U8B  O11  O3   O  0  1  N  N  N  -16.529   3.833  59.534  -3.112   1.629   1.065  O11  U8B  15  
U8B  N9   N2   N  0  1  N  N  N  -17.911   3.284  57.851  -1.612   0.590  -0.198  N9   U8B  16  
U8B  C19  C12  C  0  1  N  N  N  -18.589   5.174  56.428  -0.287   2.623  -0.185  C19  U8B  17  
U8B  O25  O4   O  0  1  N  N  N  -19.747   4.938  56.768  -0.987   2.966  -1.115  O25  U8B  18  
U8B  N20  N3   N  0  1  N  N  N  -18.278   6.137  55.556   0.686   3.441   0.264  N20  U8B  19  
U8B  O23  O5   O  0  1  N  N  N  -19.040   8.351  53.066   2.611   4.929   1.236  O23  U8B  20  
U8B  O24  O6   O  0  1  N  N  N  -17.974   8.881  54.950   2.412   6.676  -0.103  O24  U8B  21  
U8B  S6   S1   S  0  1  N  N  N  -15.436   2.429  56.396   0.504  -1.171   1.133  S6   U8B  22  
U8B  C3   C13  C  0  1  Y  N  N  -11.413   2.177  56.739   1.017  -4.211   0.539  C3   U8B  23  
U8B  C55  C14  C  0  1  Y  N  N  -10.858   2.702  57.910   1.468  -4.886  -0.580  C55  U8B  24  
U8B  C56  C15  C  0  1  Y  N  N   -9.479   2.860  58.042   0.578  -5.588  -1.370  C56  U8B  25  
U8B  C57  C16  C  0  1  Y  N  N   -8.619   2.473  57.020  -0.765  -5.616  -1.041  C57  U8B  26  
U8B  C1   C17  C  0  1  Y  N  N   -9.151   1.927  55.859  -1.216  -4.942   0.078  C1   U8B  27  
U8B  C2   C18  C  0  1  Y  N  N  -10.530   1.774  55.733  -0.325  -4.244   0.871  C2   U8B  28  
U8B  C53  C19  C  0  1  N  N  N  -13.729   3.592  58.090   3.152  -1.287   1.676  C53  U8B  29  
U8B  O54  O7   O  0  1  N  N  N  -13.794   2.808  59.044   3.230  -1.490   2.869  O54  U8B  30  
U8B  N52  N4   N  0  1  N  N  N  -13.653   4.972  58.401   4.011  -0.431   1.113  N52  U8B  31  
U8B  N26  N5   N  0  1  N  N  N  -13.380   4.207  55.805   2.412  -2.026  -0.530  N26  U8B  32  
U8B  C27  C20  C  0  1  N  N  N  -13.271   5.577  56.126   3.274  -1.173  -1.092  C27  U8B  33  
U8B  O28  O8   O  0  1  N  N  N  -12.955   6.342  55.213   3.480  -1.256  -2.284  O28  U8B  34  
U8B  C29  C21  C  0  1  N  N  R  -13.556   6.079  57.407   3.998  -0.119  -0.309  C29  U8B  35  
U8B  C50  C22  C  0  1  N  N  N  -12.448   7.034  57.882   5.439  -0.020  -0.814  C50  U8B  36  
U8B  O51  O9   O  0  1  N  N  N  -12.708   7.483  59.219   5.435   0.328  -2.200  O51  U8B  37  
U8B  S30  S2   S  0  1  N  N  N  -15.136   7.009  57.269   3.172   1.477  -0.557  S30  U8B  38  
U8B  H1   H1   H  0  1  N  N  N  -12.942   1.596  55.518   2.967  -3.922   1.355  H1   U8B  39  
U8B  H2   H2   H  0  1  N  N  N  -13.103   1.153  57.251   1.633  -3.441   2.431  H2   U8B  40  
U8B  H3   H3   H  0  1  N  N  N  -15.966   4.601  55.420   1.009   0.299  -0.706  H3   U8B  41  
U8B  H4   H4   H  0  1  N  N  N  -17.257   3.395  55.092   1.590   0.958   0.842  H4   U8B  42  
U8B  H5   H5   H  0  1  N  N  N  -16.775   5.050  57.591  -0.748   1.427   1.521  H5   U8B  43  
U8B  H6   H6   H  0  1  N  N  N  -16.496   2.058  61.436  -5.460   1.655  -0.032  H6   U8B  44  
U8B  H7   H7   H  0  1  N  N  N  -17.981   3.044  61.657  -5.360   0.343   1.167  H7   U8B  45  
U8B  H8   H8   H  0  1  N  N  N  -20.043   7.273  55.718  -0.009   5.342  -0.285  H8   U8B  46  
U8B  H9   H9   H  0  1  N  N  N  -19.871   6.336  54.195   1.140   4.600  -1.424  H9   U8B  47  
U8B  H10  H10  H  0  1  N  N  N  -17.184  -1.991  61.409  -8.990  -0.141   1.631  H10  U8B  48  
U8B  H11  H11  H  0  1  N  N  N  -19.271   1.191  62.269  -6.346  -1.222  -0.534  H11  U8B  49  
U8B  H12  H12  H  0  1  N  N  N  -17.963   0.238  64.033  -7.277  -0.245  -2.498  H12  U8B  50  
U8B  H13  H13  H  0  1  N  N  N  -16.584   0.814  63.374  -6.709   1.261  -2.082  H13  U8B  51  
U8B  H15  H15  H  0  1  N  N  N  -19.023   1.785  59.740  -4.011   0.359  -1.571  H15  U8B  52  
U8B  H16  H16  H  0  1  N  N  N  -17.442   0.977  59.472  -3.910  -0.953  -0.372  H16  U8B  53  
U8B  H17  H17  H  0  1  N  N  N  -18.615   2.664  57.505  -1.430  -0.045  -0.908  H17  U8B  54  
U8B  H18  H18  H  0  1  N  N  N  -17.321   6.308  55.322   1.245   3.166   1.007  H18  U8B  55  
U8B  H19  H19  H  0  1  N  N  N  -17.663   9.608  54.424   3.147   7.093   0.367  H19  U8B  56  
U8B  H20  H20  H  0  1  N  N  N  -11.507   2.989  58.724   2.517  -4.864  -0.837  H20  U8B  57  
U8B  H21  H21  H  0  1  N  N  N   -9.074   3.287  58.948   0.930  -6.114  -2.245  H21  U8B  58  
U8B  H22  H22  H  0  1  N  N  N   -7.551   2.595  57.128  -1.461  -6.164  -1.659  H22  U8B  59  
U8B  H23  H23  H  0  1  N  N  N   -8.497   1.622  55.056  -2.265  -4.963   0.334  H23  U8B  60  
U8B  H24  H24  H  0  1  N  N  N  -10.928   1.331  54.832  -0.678  -3.717   1.745  H24  U8B  61  
U8B  H25  H25  H  0  1  N  N  N  -13.665   5.225  59.368   4.671   0.001   1.677  H25  U8B  62  
U8B  H26  H26  H  0  1  N  N  N  -13.194   3.942  54.859   1.978  -2.685  -1.093  H26  U8B  63  
U8B  H27  H27  H  0  1  N  N  N  -11.482   6.508  57.859   5.970   0.745  -0.249  H27  U8B  64  
U8B  H28  H28  H  0  1  N  N  N  -12.408   7.904  57.210   5.937  -0.981  -0.683  H28  U8B  65  
U8B  H29  H29  H  0  1  N  N  N  -12.015   8.071  59.496   6.317   0.408  -2.588  H29  U8B  66  
U8B  H30  H30  H  0  1  N  N  N  -15.311   7.428  58.487   3.910   2.319   0.188  H30  U8B  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U8B  O23  C22  DOUB  N  N   1  
U8B  C22  C21  SING  N  N   2  
U8B  C22  O24  SING  N  N   3  
U8B  C21  N20  SING  N  N   4  
U8B  O28  C27  DOUB  N  N   5  
U8B  N20  C19  SING  N  N   6  
U8B  C2   C1   DOUB  Y  N   7  
U8B  C2   C3   SING  Y  N   8  
U8B  N26  C27  SING  N  N   9  
U8B  N26  C5   SING  N  N  10  
U8B  C7   S6   SING  N  N  11  
U8B  C7   C8   SING  N  N  12  
U8B  C1   C57  SING  Y  N  13  
U8B  C27  C29  SING  N  N  14  
U8B  S6   C5   SING  N  N  15  
U8B  C19  O25  DOUB  N  N  16  
U8B  C19  C8   SING  N  N  17  
U8B  C4   C3   SING  N  N  18  
U8B  C4   C5   SING  N  N  19  
U8B  C3   C55  DOUB  Y  N  20  
U8B  C5   C53  SING  N  N  21  
U8B  C8   N9   SING  N  N  22  
U8B  C57  C56  DOUB  Y  N  23  
U8B  S30  C29  SING  N  N  24  
U8B  C29  C50  SING  N  N  25  
U8B  C29  N52  SING  N  N  26  
U8B  N9   C10  SING  N  N  27  
U8B  C50  O51  SING  N  N  28  
U8B  C55  C56  SING  Y  N  29  
U8B  C53  N52  SING  N  N  30  
U8B  C53  O54  DOUB  N  N  31  
U8B  C10  O11  DOUB  N  N  32  
U8B  C10  C12  SING  N  N  33  
U8B  C12  C13  SING  N  N  34  
U8B  O18  C16  DOUB  N  N  35  
U8B  C13  C14  SING  N  N  36  
U8B  C16  O17  SING  N  N  37  
U8B  C16  C14  SING  N  N  38  
U8B  C14  N15  SING  N  N  39  
U8B  C4   H1   SING  N  N  40  
U8B  C4   H2   SING  N  N  41  
U8B  C7   H3   SING  N  N  42  
U8B  C7   H4   SING  N  N  43  
U8B  C8   H5   SING  N  N  44  
U8B  C13  H6   SING  N  N  45  
U8B  C13  H7   SING  N  N  46  
U8B  C21  H8   SING  N  N  47  
U8B  C21  H9   SING  N  N  48  
U8B  O17  H10  SING  N  N  49  
U8B  C14  H11  SING  N  N  50  
U8B  N15  H12  SING  N  N  51  
U8B  N15  H13  SING  N  N  52  
U8B  C12  H15  SING  N  N  53  
U8B  C12  H16  SING  N  N  54  
U8B  N9   H17  SING  N  N  55  
U8B  N20  H18  SING  N  N  56  
U8B  O24  H19  SING  N  N  57  
U8B  C55  H20  SING  N  N  58  
U8B  C56  H21  SING  N  N  59  
U8B  C57  H22  SING  N  N  60  
U8B  C1   H23  SING  N  N  61  
U8B  C2   H24  SING  N  N  62  
U8B  N52  H25  SING  N  N  63  
U8B  N26  H26  SING  N  N  64  
U8B  C50  H27  SING  N  N  65  
U8B  C50  H28  SING  N  N  66  
U8B  O51  H29  SING  N  N  67  
U8B  S30  H30  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U8B  InChI             InChI                 1.03   "InChI=1S/C22H29N5O9S2/c23-13(18(33)34)6-7-15(29)25-14(17(32)24-9-16(30)31)10-38-22(8-12-4-2-1-3-5-12)20(36)26-21(37,11-28)19(35)27-22/h1-5,13-14,28,37H,6-11,23H2,(H,24,32)(H,25,29)(H,26,36)(H,27,35)(H,30,31)(H,33,34)/t13-,14-,21+,22+/m0/s1"  
U8B  InChIKey          InChI                 1.03   BVLPJUGYSWKCGB-HCIHMXRSSA-N  
U8B  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCC(=O)N[C@@H](CS[C@@]1(Cc2ccccc2)NC(=O)[C@](S)(CO)NC1=O)C(=O)NCC(O)=O)C(O)=O"  
U8B  SMILES            CACTVS                3.385  "N[CH](CCC(=O)N[CH](CS[C]1(Cc2ccccc2)NC(=O)[C](S)(CO)NC1=O)C(=O)NCC(O)=O)C(O)=O"  
U8B  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C[C@]2(C(=O)N[C@](C(=O)N2)(CO)S)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N"  
U8B  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CC2(C(=O)NC(C(=O)N2)(CO)S)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          U8B
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-azanyl-5-[[(2~{R})-3-[(2~{R},5~{R})-5-(hydroxymethyl)-3,6-bis(oxidanylidene)-2-(phenylmethyl)-5-sulfanyl-piperazin-2-yl]sulfanyl-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U8B  "Create component"  2021-01-28  PDBE  
U8B  "Initial release"   2021-05-12  RCSB  
##
