data_U1B
# 
_chem_comp.id                                    U1B 
_chem_comp.name                                  "4-nitro-3-[(3S)-3-oxidanylpiperidin-1-yl]benzaldehyde" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H14 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "4-nitro-3-[(3~{S})-3-oxidanylpiperidin-1-yl]benzaldehyde; 3-(3-hydroxypiperidin-1-yl)-4-nitrobenzaldehyde" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-01-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        250.251 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U1B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7BKH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U1B C10 C1  C 0  1 N N N N N N -20.843 -10.408 -4.119  -3.622 1.933  0.105  C10 U1B 1  
U1B C13 C2  C 0  1 Y N N N N N -21.042 -6.621  -4.726  -2.208 -1.542 0.027  C13 U1B 2  
U1B C02 C3  C 0  1 N N S N N N -22.970 -9.483  -10.011 2.957  1.177  1.019  C02 U1B 3  
U1B C03 C4  C 0  1 N N N N N N -22.428 -8.472  -10.938 3.375  1.897  -0.266 C03 U1B 4  
U1B C04 C5  C 0  1 N N N N N N -21.105 -8.101  -10.492 2.852  1.113  -1.474 C04 U1B 5  
U1B C05 C6  C 0  1 N N N N N N -21.098 -7.322  -9.189  1.332  0.980  -1.371 C05 U1B 6  
U1B C07 C7  C 0  1 Y N N N N N -21.694 -7.798  -6.745  -0.389 0.029  -0.061 C07 U1B 7  
U1B C08 C8  C 0  1 Y N N N N N -21.484 -9.034  -6.127  -1.288 1.082  -0.012 C08 U1B 8  
U1B C09 C9  C 0  1 Y N N N N N -21.065 -9.063  -4.808  -2.660 0.821  0.052  C09 U1B 9  
U1B C12 C10 C 0  1 Y N N N N N -20.833 -7.887  -4.087  -3.113 -0.502 0.077  C12 U1B 10 
U1B C14 C11 C 0  1 Y N N N N N -21.454 -6.574  -6.010  -0.852 -1.282 -0.042 C14 U1B 11 
U1B C18 C12 C 0  1 N N N N N N -22.939 -9.039  -8.545  1.433  1.042  1.050  C18 U1B 12 
U1B N06 N1  N 0  1 N N N N N N -22.141 -7.791  -8.128  0.983  0.284  -0.125 N06 U1B 13 
U1B N15 N2  N 1  1 N N N N N N -21.677 -5.257  -6.644  0.112  -2.405 -0.094 N15 U1B 14 
U1B O01 O1  O 0  1 N N N N N N -24.321 -9.833  -10.397 3.552  -0.122 1.054  O01 U1B 15 
U1B O11 O2  O 0  1 N N N N N N -20.738 -10.448 -2.930  -4.812 1.703  0.161  O11 U1B 16 
U1B O16 O3  O 0  1 N N N N N N -22.542 -5.157  -7.788  1.307  -2.179 -0.154 O16 U1B 17 
U1B O17 O4  O -1 1 N N N N N N -21.132 -4.260  -6.178  -0.291 -3.554 -0.077 O17 U1B 18 
U1B H1  H1  H 0  1 N N N N N N -20.782 -11.315 -4.702  -3.269 2.954  0.100  H1  U1B 19 
U1B H2  H2  H 0  1 N N N N N N -20.870 -5.705  -4.180  -2.560 -2.563 0.047  H2  U1B 20 
U1B H3  H3  H 0  1 N N N N N N -22.345 -10.384 -10.091 3.289  1.753  1.883  H3  U1B 21 
U1B H4  H4  H 0  1 N N N N N N -23.080 -7.586  -10.942 2.953  2.902  -0.275 H4  U1B 22 
U1B H5  H5  H 0  1 N N N N N N -22.373 -8.892  -11.953 4.462  1.957  -0.313 H5  U1B 23 
U1B H6  H6  H 0  1 N N N N N N -20.515 -9.019  -10.351 3.110  1.643  -2.391 H6  U1B 24 
U1B H7  H7  H 0  1 N N N N N N -20.637 -7.480  -11.270 3.305  0.122  -1.487 H7  U1B 25 
U1B H8  H8  H 0  1 N N N N N N -20.096 -7.412  -8.744  0.879  1.972  -1.371 H8  U1B 26 
U1B H9  H9  H 0  1 N N N N N N -21.302 -6.267  -9.423  0.958  0.410  -2.222 H9  U1B 27 
U1B H10 H10 H 0  1 N N N N N N -21.646 -9.953  -6.671  -0.931 2.101  -0.027 H10 U1B 28 
U1B H11 H11 H 0  1 N N N N N N -20.500 -7.932  -3.061  -4.171 -0.709 0.135  H11 U1B 29 
U1B H12 H12 H 0  1 N N N N N N -23.983 -8.861  -8.247  1.133  0.517  1.957  H12 U1B 30 
U1B H13 H13 H 0  1 N N N N N N -22.531 -9.882  -7.968  0.980  2.033  1.038  H13 U1B 31 
U1B H14 H14 H 0  1 N N N N N N -24.664 -10.484 -9.796  4.518  -0.112 1.037  H14 U1B 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U1B C03 C04 SING N N 1  
U1B C03 C02 SING N N 2  
U1B C04 C05 SING N N 3  
U1B O01 C02 SING N N 4  
U1B C02 C18 SING N N 5  
U1B C05 N06 SING N N 6  
U1B C18 N06 SING N N 7  
U1B N06 C07 SING N N 8  
U1B O16 N15 DOUB N N 9  
U1B C07 C08 DOUB Y N 10 
U1B C07 C14 SING Y N 11 
U1B N15 O17 SING N N 12 
U1B N15 C14 SING N N 13 
U1B C08 C09 SING Y N 14 
U1B C14 C13 DOUB Y N 15 
U1B C09 C10 SING N N 16 
U1B C09 C12 DOUB Y N 17 
U1B C13 C12 SING Y N 18 
U1B C10 O11 DOUB N N 19 
U1B C10 H1  SING N N 20 
U1B C13 H2  SING N N 21 
U1B C02 H3  SING N N 22 
U1B C03 H4  SING N N 23 
U1B C03 H5  SING N N 24 
U1B C04 H6  SING N N 25 
U1B C04 H7  SING N N 26 
U1B C05 H8  SING N N 27 
U1B C05 H9  SING N N 28 
U1B C08 H10 SING N N 29 
U1B C12 H11 SING N N 30 
U1B C18 H12 SING N N 31 
U1B C18 H13 SING N N 32 
U1B O01 H14 SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U1B InChI            InChI                1.03  "InChI=1S/C12H14N2O4/c15-8-9-3-4-11(14(17)18)12(6-9)13-5-1-2-10(16)7-13/h3-4,6,8,10,16H,1-2,5,7H2/t10-/m0/s1" 
U1B InChIKey         InChI                1.03  GGOBRMGVXJGMTC-JTQLQIEISA-N                                                                                   
U1B SMILES_CANONICAL CACTVS               3.385 "O[C@H]1CCCN(C1)c2cc(C=O)ccc2[N](=O)=O"                                                                       
U1B SMILES           CACTVS               3.385 "O[CH]1CCCN(C1)c2cc(C=O)ccc2[N](=O)=O"                                                                        
U1B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C=O)N2CCC[C@@H](C2)O)N(=O)=O"                                                                      
U1B SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C=O)N2CCCC(C2)O)N(=O)=O"                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           U1B 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-nitro-3-[(3~{S})-3-oxidanylpiperidin-1-yl]benzaldehyde" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 U1B "4-nitro-3-[(3~{S})-3-oxidanylpiperidin-1-yl]benzaldehyde" PDB ? 
2 U1B "3-(3-hydroxypiperidin-1-yl)-4-nitrobenzaldehyde"          PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U1B "Create component" 2021-01-17 PDBE 
U1B "Modify synonyms"  2021-01-18 PDBE 
U1B "Initial release"  2021-06-09 RCSB 
U1B "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            U1B 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C10 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
