data_S1B
# 
_chem_comp.id                                    S1B 
_chem_comp.name                                  "4-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborole-6-carbonyl)-1,3,3-trimethylpiperazin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H19 B N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "1,3,3-trimethyl-4-[(1-oxidanyl-3H-2,1-benzoxaborol-6-yl)carbonyl]piperazin-2-one;  4-(1-hydroxy-1,3-dihydro-2,1-benzoxaborole-6-carbonyl)-1,3,3-trimethylpiperazin-2-one" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        302.133 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S1B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ATX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S1B C1  C1  C 0 1 N N N N N N -6.511  -0.946 14.654 -2.208 -1.831 0.746  C1  S1B 1  
S1B C2  C2  C 0 1 N N N N N N -7.003  0.246  15.467 -1.465 -1.301 -0.482 C2  S1B 2  
S1B C3  C3  C 0 1 N N N N N N -8.080  -1.273 17.117 -2.859 0.790  -0.520 C3  S1B 3  
S1B C4  C4  C 0 1 N N N N N N -7.622  -2.099 18.319 -2.772 2.245  -0.056 C4  S1B 4  
S1B C5  C5  C 0 1 N N N N N N -8.098  -2.299 15.964 -3.793 0.029  0.381  C5  S1B 5  
S1B C6  C6  C 0 1 N N N N N N -9.505  -0.765 17.337 -3.381 0.740  -1.957 C6  S1B 6  
S1B C7  C7  C 0 1 N N N N N N -6.510  0.482  17.934 -0.409 0.918  -0.381 C7  S1B 7  
S1B C8  C8  C 0 1 Y N N N N N -5.398  1.444  17.665 0.919  0.271  -0.452 C8  S1B 8  
S1B C9  C9  C 0 1 Y N N N N N -5.416  2.649  18.362 2.000  0.814  0.241  C9  S1B 9  
S1B C10 C10 C 0 1 Y N N N N N -4.350  3.540  18.314 3.242  0.197  0.167  C10 S1B 10 
S1B C11 C11 C 0 1 Y N N N N N -3.279  3.226  17.468 3.409  -0.959 -0.598 C11 S1B 11 
S1B C12 C12 C 0 1 Y N N N N N -3.251  2.033  16.754 2.334  -1.492 -1.283 C12 S1B 12 
S1B C13 C13 C 0 1 Y N N N N N -4.304  1.144  16.861 1.094  -0.889 -1.211 C13 S1B 13 
S1B C14 C14 C 0 1 N N N N N N -2.287  4.351  17.387 4.848  -1.385 -0.482 C14 S1B 14 
S1B O1  O1  O 0 1 N N N N N N -2.748  5.340  18.345 5.546  -0.471 0.362  O1  S1B 15 
S1B O4  O2  O 0 1 N N N N N N -6.862  0.321  19.091 -0.491 2.123  -0.252 O4  S1B 16 
S1B N1  N1  N 0 1 N N N N N N -7.159  -0.102 16.886 -1.527 0.170  -0.458 N1  S1B 17 
S1B O   O3  O 0 1 N N N N N N -8.758  -3.305 16.145 -4.870 0.520  0.646  O   S1B 18 
S1B N   N2  N 0 1 N N N N N N -7.388  -2.106 14.841 -3.492 -1.162 0.902  N   S1B 19 
S1B C   C15 C 0 1 N N N N N N -7.744  -2.847 13.632 -4.525 -1.844 1.685  C   S1B 20 
S1B B   B1  B 0 1 N N N N N N -4.121  5.057  18.911 4.639  0.529  0.803  B   S1B 21 
S1B H1  H1  H 0 1 N N N N N N -5.493  -1.208 14.979 -2.374 -2.902 0.630  H1  S1B 22 
S1B H2  H2  H 0 1 N N N N N N -6.497  -0.674 13.588 -1.602 -1.657 1.635  H2  S1B 23 
S1B H3  H3  H 0 1 N N N N N N -6.275  1.066  15.377 -0.425 -1.626 -0.452 H3  S1B 24 
S1B H4  H4  H 0 1 N N N N N N -7.975  0.574  15.070 -1.941 -1.674 -1.389 H4  S1B 25 
S1B H5  H5  H 0 1 N N N N N N -7.574  -1.455 19.210 -3.777 2.653  0.052  H5  S1B 26 
S1B H6  H6  H 0 1 N N N N N N -8.337  -2.916 18.496 -2.257 2.290  0.903  H6  S1B 27 
S1B H7  H7  H 0 1 N N N N N N -6.626  -2.520 18.116 -2.220 2.829  -0.793 H7  S1B 28 
S1B H8  H8  H 0 1 N N N N N N -9.511  -0.031 18.157 -2.701 1.288  -2.609 H8  S1B 29 
S1B H9  H9  H 0 1 N N N N N N -9.870  -0.288 16.416 -3.442 -0.297 -2.286 H9  S1B 30 
S1B H10 H10 H 0 1 N N N N N N -10.159 -1.610 17.597 -4.371 1.195  -2.001 H10 S1B 31 
S1B H11 H11 H 0 1 N N N N N N -6.282  2.899  18.957 1.872  1.708  0.833  H11 S1B 32 
S1B H12 H12 H 0 1 N N N N N N -2.409  1.802  16.118 2.463  -2.389 -1.870 H12 S1B 33 
S1B H13 H13 H 0 1 N N N N N N -4.277  0.211  16.317 0.258  -1.312 -1.748 H13 S1B 34 
S1B H15 H15 H 0 1 N N N N N N -8.400  -3.689 13.897 -4.438 -1.553 2.732  H15 S1B 35 
S1B H16 H16 H 0 1 N N N N N N -8.269  -2.179 12.934 -5.510 -1.563 1.311  H16 S1B 36 
S1B H17 H17 H 0 1 N N N N N N -6.830  -3.231 13.155 -4.396 -2.922 1.595  H17 S1B 37 
S1B O2  O4  O 0 1 N N N N N N -4.780  5.686  19.542 4.938  1.623  1.658  O2  S1B 38 
S1B H19 H19 H 0 1 N N N N N N -1.280  3.997  17.654 4.897  -2.386 -0.054 H19 S1B 39 
S1B H18 H18 H 0 1 N N N N N N -2.269  4.776  16.373 5.307  -1.390 -1.471 H18 S1B 40 
S1B H14 H14 H 0 1 N N N N N N -4.354  6.517  19.716 5.861  1.655  1.947  H14 S1B 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S1B C   N   SING N N 1  
S1B C1  N   SING N N 2  
S1B C1  C2  SING N N 3  
S1B N   C5  SING N N 4  
S1B C2  N1  SING N N 5  
S1B C5  O   DOUB N N 6  
S1B C5  C3  SING N N 7  
S1B C12 C13 DOUB Y N 8  
S1B C12 C11 SING Y N 9  
S1B C13 C8  SING Y N 10 
S1B N1  C3  SING N N 11 
S1B N1  C7  SING N N 12 
S1B C3  C6  SING N N 13 
S1B C3  C4  SING N N 14 
S1B C14 C11 SING N N 15 
S1B C14 O1  SING N N 16 
S1B C11 C10 DOUB Y N 17 
S1B C8  C7  SING N N 18 
S1B C8  C9  DOUB Y N 19 
S1B C7  O4  DOUB N N 20 
S1B C10 C9  SING Y N 21 
S1B C10 B   SING N N 22 
S1B O1  B   SING N N 23 
S1B C1  H1  SING N N 24 
S1B C1  H2  SING N N 25 
S1B C2  H3  SING N N 26 
S1B C2  H4  SING N N 27 
S1B C4  H5  SING N N 28 
S1B C4  H6  SING N N 29 
S1B C4  H7  SING N N 30 
S1B C6  H8  SING N N 31 
S1B C6  H9  SING N N 32 
S1B C6  H10 SING N N 33 
S1B C9  H11 SING N N 34 
S1B C12 H12 SING N N 35 
S1B C13 H13 SING N N 36 
S1B C   H15 SING N N 37 
S1B C   H16 SING N N 38 
S1B C   H17 SING N N 39 
S1B B   O2  SING N N 40 
S1B C14 H19 SING N N 41 
S1B C14 H18 SING N N 42 
S1B O2  H14 SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S1B InChI            InChI                1.03  "InChI=1S/C15H19BN2O4/c1-15(2)14(20)17(3)6-7-18(15)13(19)10-4-5-11-9-22-16(21)12(11)8-10/h4-5,8,21H,6-7,9H2,1-3H3" 
S1B InChIKey         InChI                1.03  BRKQWWXXHOEPIY-UHFFFAOYSA-N                                                                                        
S1B SMILES_CANONICAL CACTVS               3.385 "CN1CCN(C(=O)c2ccc3COB(O)c3c2)C(C)(C)C1=O"                                                                         
S1B SMILES           CACTVS               3.385 "CN1CCN(C(=O)c2ccc3COB(O)c3c2)C(C)(C)C1=O"                                                                         
S1B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B1(c2cc(ccc2CO1)C(=O)N3CCN(C(=O)C3(C)C)C)O"                                                                       
S1B SMILES           "OpenEye OEToolkits" 2.0.7 "B1(c2cc(ccc2CO1)C(=O)N3CCN(C(=O)C3(C)C)C)O"                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           S1B 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1,3,3-trimethyl-4-[(1-oxidanyl-3~{H}-2,1-benzoxaborol-6-yl)carbonyl]piperazin-2-one" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 S1B "1,3,3-trimethyl-4-[(1-oxidanyl-3H-2,1-benzoxaborol-6-yl)carbonyl]piperazin-2-one"      PDB     ? 
2 S1B "4-(1-hydroxy-1,3-dihydro-2,1-benzoxaborole-6-carbonyl)-1,3,3-trimethylpiperazin-2-one" PUBCHEM ? 
3 S1B 126822123                                                                               PUBCHEM ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S1B "Create component" 2020-11-04 PDBE 
S1B "Initial release"  2021-08-11 RCSB 
S1B "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S1B 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
