data_PNB
# 
_chem_comp.id                                    PNB 
_chem_comp.name                                  4-NITRO-BENZYLPHOSPHONOBUTANOYL-GLYCINE 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H17 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        360.256 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PNB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1YEC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PNB N1   N1   N 1  1 N N N 7.748  40.336 62.344 1.126  -0.046 -7.680 N1   PNB 1  
PNB O4   O4   O 0  1 N N N 7.742  41.498 61.949 1.427  0.995  -8.233 O4   PNB 2  
PNB O5   O5   O -1 1 N N N 6.803  39.931 62.982 1.338  -1.111 -8.231 O5   PNB 3  
PNB C1   C1   C 0  1 Y N N 10.849 37.508 61.924 -0.604 0.029  -3.945 C1   PNB 4  
PNB C2   C2   C 0  1 Y N N 11.060 38.756 61.357 -0.366 -1.184 -4.568 C2   PNB 5  
PNB C3   C3   C 0  1 Y N N 10.058 39.720 61.444 0.212  -1.221 -5.817 C3   PNB 6  
PNB C4   C4   C 0  1 Y N N 8.866  39.385 62.106 0.560  -0.021 -6.460 C4   PNB 7  
PNB C5   C5   C 0  1 Y N N 8.711  38.120 62.638 0.314  1.204  -5.819 C5   PNB 8  
PNB C6   C6   C 0  1 Y N N 9.692  37.201 62.545 -0.269 1.218  -4.573 C6   PNB 9  
PNB C7   C7   C 0  1 N N N 11.883 36.428 61.979 -1.238 0.057  -2.578 C7   PNB 10 
PNB O1   O1   O 0  1 N N N 13.195 36.894 61.673 -0.217 0.015  -1.579 O1   PNB 11 
PNB P1   P1   P 0  1 N N S 14.280 37.503 62.725 -0.961 0.048  -0.152 P1   PNB 12 
PNB O2   O2   O 0  1 N N N 14.355 38.922 62.410 -1.756 1.291  -0.038 O2   PNB 13 
PNB O3   O3   O 0  1 N N N 13.956 37.114 64.071 -1.937 -1.226 -0.026 O3   PNB 14 
PNB C8   C8   C 0  1 N N N 15.763 36.743 62.262 0.280  -0.003 1.181  C8   PNB 15 
PNB C9   C9   C 0  1 N N N 16.068 36.837 60.789 -0.426 0.027  2.538  C9   PNB 16 
PNB C10  C10  C 0  1 N N N 17.405 36.173 60.592 0.615  -0.015 3.657  C10  PNB 17 
PNB C11  C11  C 0  1 N N N 17.862 35.990 59.159 -0.081 0.015  4.993  C11  PNB 18 
PNB O6   O6   O 0  1 N N N 18.479 36.913 58.598 -1.291 0.066  5.045  O6   PNB 19 
PNB N2   N2   N 0  1 N N N 17.580 34.811 58.572 0.641  -0.014 6.131  N2   PNB 20 
PNB C12  C12  C 0  1 N N N 17.935 34.503 57.323 -0.035 0.015  7.429  C12  PNB 21 
PNB C13  C13  C 0  1 N N N 16.915 34.890 56.214 0.990  -0.026 8.532  C13  PNB 22 
PNB O7   O7   O 0  1 N N N 16.679 34.081 55.291 2.166  -0.076 8.261  O7   PNB 23 
PNB O8   O8   O 0  1 N N N 16.450 36.033 56.146 0.597  -0.009 9.816  O8   PNB 24 
PNB H2   H2   H 0  1 N N N 12.010 38.978 60.844 -0.634 -2.105 -4.072 H2   PNB 25 
PNB H3   H3   H 0  1 N N N 10.204 40.719 61.001 0.397  -2.169 -6.301 H3   PNB 26 
PNB H5   H5   H 0  1 N N N 7.777  37.835 63.151 0.579  2.132  -6.304 H5   PNB 27 
PNB H6   H6   H 0  1 N N N 9.547  36.196 62.977 -0.460 2.160  -4.078 H6   PNB 28 
PNB H71  1H7  H 0  1 N N N 11.865 35.910 62.966 -1.894 -0.805 -2.464 H71  PNB 29 
PNB H72  2H7  H 0  1 N N N 11.600 35.573 61.320 -1.819 0.973  -2.465 H72  PNB 30 
PNB HO3  HO3  H 0  1 N N N 14.588 37.469 64.684 -1.380 -2.013 -0.105 HO3  PNB 31 
PNB H81  1H8  H 0  1 N N N 16.612 37.143 62.863 0.940  0.859  1.096  H81  PNB 32 
PNB H82  2H8  H 0  1 N N N 15.778 35.679 62.597 0.865  -0.918 1.098  H82  PNB 33 
PNB H91  1H9  H 0  1 N N N 15.264 36.414 60.142 -1.087 -0.835 2.623  H91  PNB 34 
PNB H92  2H9  H 0  1 N N N 16.028 37.878 60.394 -1.012 0.943  2.621  H92  PNB 35 
PNB H101 1H10 H 0  0 N N N 18.185 36.722 61.168 1.275  0.847  3.572  H101 PNB 36 
PNB H102 2H10 H 0  0 N N N 17.417 35.190 61.118 1.200  -0.930 3.574  H102 PNB 37 
PNB HN2  HN2  H 0  1 N N N 17.066 34.109 59.105 1.609  -0.055 6.089  HN2  PNB 38 
PNB H121 1H12 H 0  0 N N N 18.932 34.944 57.092 -0.696 -0.847 7.515  H121 PNB 39 
PNB H122 2H12 H 0  0 N N N 18.176 33.416 57.254 -0.621 0.931  7.513  H122 PNB 40 
PNB HO8  HO8  H 0  1 N N N 15.827 36.269 55.468 1.256  -0.036 10.523 HO8  PNB 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PNB N1  O4   DOUB N N 1  
PNB N1  O5   SING N N 2  
PNB N1  C4   SING N N 3  
PNB C1  C2   DOUB Y N 4  
PNB C1  C6   SING Y N 5  
PNB C1  C7   SING N N 6  
PNB C2  C3   SING Y N 7  
PNB C2  H2   SING N N 8  
PNB C3  C4   DOUB Y N 9  
PNB C3  H3   SING N N 10 
PNB C4  C5   SING Y N 11 
PNB C5  C6   DOUB Y N 12 
PNB C5  H5   SING N N 13 
PNB C6  H6   SING N N 14 
PNB C7  O1   SING N N 15 
PNB C7  H71  SING N N 16 
PNB C7  H72  SING N N 17 
PNB O1  P1   SING N N 18 
PNB P1  O2   DOUB N N 19 
PNB P1  O3   SING N N 20 
PNB P1  C8   SING N N 21 
PNB O3  HO3  SING N N 22 
PNB C8  C9   SING N N 23 
PNB C8  H81  SING N N 24 
PNB C8  H82  SING N N 25 
PNB C9  C10  SING N N 26 
PNB C9  H91  SING N N 27 
PNB C9  H92  SING N N 28 
PNB C10 C11  SING N N 29 
PNB C10 H101 SING N N 30 
PNB C10 H102 SING N N 31 
PNB C11 O6   DOUB N N 32 
PNB C11 N2   SING N N 33 
PNB N2  C12  SING N N 34 
PNB N2  HN2  SING N N 35 
PNB C12 C13  SING N N 36 
PNB C12 H121 SING N N 37 
PNB C12 H122 SING N N 38 
PNB C13 O7   DOUB N N 39 
PNB C13 O8   SING N N 40 
PNB O8  HO8  SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PNB SMILES           ACDLabs              10.04 "O=C(O)CNC(=O)CCCP(=O)(OCc1ccc(cc1)[N+]([O-])=O)O"                                                                                    
PNB SMILES_CANONICAL CACTVS               3.341 "OC(=O)CNC(=O)CCC[P@@](O)(=O)OCc1ccc(cc1)[N+]([O-])=O"                                                                                
PNB SMILES           CACTVS               3.341 "OC(=O)CNC(=O)CCC[P](O)(=O)OCc1ccc(cc1)[N+]([O-])=O"                                                                                  
PNB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CO[P@](=O)(CCCC(=O)NCC(=O)O)O)[N+](=O)[O-]"                                                                                 
PNB SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1COP(=O)(CCCC(=O)NCC(=O)O)O)[N+](=O)[O-]"                                                                                    
PNB InChI            InChI                1.03  "InChI=1S/C13H17N2O8P/c16-12(14-8-13(17)18)2-1-7-24(21,22)23-9-10-3-5-11(6-4-10)15(19)20/h3-6H,1-2,7-9H2,(H,14,16)(H,17,18)(H,21,22)" 
PNB InChIKey         InChI                1.03  LNMNPGKCSJFAGN-UHFFFAOYSA-N                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PNB "SYSTEMATIC NAME" ACDLabs              10.04 "N-(4-{(S)-hydroxy[(4-nitrobenzyl)oxy]phosphoryl}butanoyl)glycine"             
PNB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[4-[hydroxy-[(4-nitrophenyl)methoxy]phosphoryl]butanoylamino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PNB "Create component"  1999-07-08 EBI  
PNB "Modify descriptor" 2011-06-04 RCSB 
# 
