data_O7B
#

_chem_comp.id                                   O7B
_chem_comp.name                                 "(3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H24 N2 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Palonosetron; Aloxi"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-17
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       296.407
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    O7B
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Y1Z
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O7B  C01  C1   C  0  1  N  N  N  158.599  131.573  158.700   2.997   2.796  -0.379  C01  O7B   1  
O7B  C02  C2   C  0  1  N  N  N  157.885  130.270  158.315   1.654   2.460   0.265  C02  O7B   2  
O7B  C03  C3   C  0  1  N  N  S  156.478  130.160  158.977   1.136   1.151  -0.336  C03  O7B   3  
O7B  C04  C4   C  0  1  N  N  N  155.720  128.884  158.403  -0.185   0.775   0.330  C04  O7B   4  
O7B  C06  C5   C  0  1  N  N  N  153.632  129.937  159.196   0.285  -1.557  -0.204  C06  O7B   5  
O7B  C08  C6   C  0  1  Y  N  N  154.280  131.321  158.856   1.721  -1.260  -0.058  C08  O7B   6  
O7B  C09  C7   C  0  1  Y  N  N  155.649  131.410  158.758   2.158   0.068  -0.111  C09  O7B   7  
O7B  C10  C8   C  0  1  Y  N  N  156.271  132.671  158.451   3.494   0.358   0.034  C10  O7B   8  
O7B  C11  C9   C  0  1  Y  N  N  155.486  133.835  158.247   4.398  -0.682   0.236  C11  O7B   9  
O7B  C12  C10  C  0  1  Y  N  N  154.093  133.741  158.348   3.974  -1.994   0.282  C12  O7B  10  
O7B  C13  C11  C  0  1  Y  N  N  153.473  132.493  158.654   2.635  -2.293   0.134  C13  O7B  11  
O7B  C14  C12  C  0  1  N  N  N  157.811  132.838  158.320   4.041   1.753  -0.028  C14  O7B  12  
O7B  C15  C13  C  0  1  N  N  S  153.762  127.351  159.298  -2.025  -0.814  -0.376  C15  O7B  13  
O7B  C16  C14  C  0  1  N  N  N  153.630  127.169  160.792  -2.537   0.219  -1.383  C16  O7B  14  
O7B  C18  C15  C  0  1  N  N  N  155.244  125.509  160.808  -3.190   1.720   0.403  C18  O7B  15  
O7B  C19  C16  C  0  1  N  N  N  155.524  125.664  159.334  -2.696   0.729   1.461  C19  O7B  16  
O7B  C20  C17  C  0  1  N  N  N  154.494  126.137  158.659  -2.847  -0.696   0.914  C20  O7B  17  
O7B  C21  C18  C  0  1  N  N  N  153.290  125.377  158.913  -4.324  -0.938   0.578  C21  O7B  18  
O7B  C22  C19  C  0  1  N  N  N  153.062  125.222  160.514  -4.772   0.100  -0.456  C22  O7B  19  
O7B  N05  N1   N  0  1  N  N  N  154.371  128.686  158.975  -0.612  -0.560  -0.086  N05  O7B  20  
O7B  N17  N2   N  0  1  N  N  N  153.838  125.965  161.152  -3.641   0.980  -0.784  N17  O7B  21  
O7B  O07  O1   O  0  1  N  N  N  152.534  129.907  159.651  -0.087  -2.693  -0.425  O07  O7B  22  
O7B  H1   H1   H  0  1  N  N  N  158.757  131.575  159.789   2.875   2.831  -1.462  H1   O7B  23  
O7B  H2   H2   H  0  1  N  N  N  159.572  131.602  158.188   3.330   3.771  -0.024  H2   O7B  24  
O7B  H3   H3   H  0  1  N  N  N  157.767  130.239  157.222   1.784   2.342   1.341  H3   O7B  25  
O7B  H4   H4   H  0  1  N  N  N  158.499  129.418  158.642   0.942   3.261   0.067  H4   O7B  26  
O7B  H5   H5   H  0  1  N  N  N  156.617  130.012  160.058   0.977   1.283  -1.407  H5   O7B  27  
O7B  H6   H6   H  0  1  N  N  N  156.325  127.992  158.624  -0.059   0.791   1.413  H6   O7B  28  
O7B  H7   H7   H  0  1  N  N  N  155.622  129.000  157.314  -0.949   1.500   0.048  H7   O7B  29  
O7B  H8   H8   H  0  1  N  N  N  155.956  134.780  158.017   5.448  -0.457   0.358  H8   O7B  30  
O7B  H9   H9   H  0  1  N  N  N  153.484  134.619  158.193   4.691  -2.787   0.434  H9   O7B  31  
O7B  H10  H10  H  0  1  N  N  N  152.398  132.429  158.734   2.299  -3.319   0.168  H10  O7B  32  
O7B  H11  H11  H  0  1  N  N  N  158.046  133.094  157.276   4.832   1.786  -0.777  H11  O7B  33  
O7B  H12  H12  H  0  1  N  N  N  158.130  133.658  158.980   4.472   2.003   0.942  H12  O7B  34  
O7B  H13  H13  H  0  1  N  N  N  152.743  127.353  158.884  -2.139  -1.816  -0.790  H13  O7B  35  
O7B  H14  H14  H  0  1  N  N  N  154.361  127.820  161.294  -1.728   0.900  -1.648  H14  O7B  36  
O7B  H15  H15  H  0  1  N  N  N  152.613  127.458  161.095  -2.891  -0.291  -2.279  H15  O7B  37  
O7B  H16  H16  H  0  1  N  N  N  155.355  124.450  161.085  -4.019   2.300   0.807  H16  O7B  38  
O7B  H17  H17  H  0  1  N  N  N  155.966  126.114  161.376  -2.377   2.391   0.125  H17  O7B  39  
O7B  H18  H18  H  0  1  N  N  N  155.790  124.679  158.923  -1.648   0.925   1.685  H18  O7B  40  
O7B  H19  H19  H  0  1  N  N  N  156.371  126.354  159.209  -3.290   0.838   2.369  H19  O7B  41  
O7B  H20  H20  H  0  1  N  N  N  154.675  126.303  157.587  -2.504  -1.429   1.645  H20  O7B  42  
O7B  H21  H21  H  0  1  N  N  N  152.429  125.899  158.471  -4.445  -1.940   0.166  H21  O7B  43  
O7B  H22  H22  H  0  1  N  N  N  153.386  124.379  158.460  -4.925  -0.837   1.481  H22  O7B  44  
O7B  H23  H23  H  0  1  N  N  N  152.024  125.493  160.757  -5.110  -0.409  -1.358  H23  O7B  45  
O7B  H24  H24  H  0  1  N  N  N  153.246  124.177  160.804  -5.588   0.694  -0.045  H24  O7B  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O7B  C11  C12  DOUB  Y  N   1  
O7B  C11  C10  SING  Y  N   2  
O7B  C02  C01  SING  N  N   3  
O7B  C02  C03  SING  N  N   4  
O7B  C14  C10  SING  N  N   5  
O7B  C14  C01  SING  N  N   6  
O7B  C12  C13  SING  Y  N   7  
O7B  C04  N05  SING  N  N   8  
O7B  C04  C03  SING  N  N   9  
O7B  C10  C09  DOUB  Y  N  10  
O7B  C13  C08  DOUB  Y  N  11  
O7B  C20  C21  SING  N  N  12  
O7B  C20  C15  SING  N  N  13  
O7B  C20  C19  SING  N  N  14  
O7B  C09  C08  SING  Y  N  15  
O7B  C09  C03  SING  N  N  16  
O7B  C08  C06  SING  N  N  17  
O7B  C21  C22  SING  N  N  18  
O7B  N05  C06  SING  N  N  19  
O7B  N05  C15  SING  N  N  20  
O7B  C06  O07  DOUB  N  N  21  
O7B  C15  C16  SING  N  N  22  
O7B  C19  C18  SING  N  N  23  
O7B  C22  N17  SING  N  N  24  
O7B  C16  N17  SING  N  N  25  
O7B  C18  N17  SING  N  N  26  
O7B  C01  H1   SING  N  N  27  
O7B  C01  H2   SING  N  N  28  
O7B  C02  H3   SING  N  N  29  
O7B  C02  H4   SING  N  N  30  
O7B  C03  H5   SING  N  N  31  
O7B  C04  H6   SING  N  N  32  
O7B  C04  H7   SING  N  N  33  
O7B  C11  H8   SING  N  N  34  
O7B  C12  H9   SING  N  N  35  
O7B  C13  H10  SING  N  N  36  
O7B  C14  H11  SING  N  N  37  
O7B  C14  H12  SING  N  N  38  
O7B  C15  H13  SING  N  N  39  
O7B  C16  H14  SING  N  N  40  
O7B  C16  H15  SING  N  N  41  
O7B  C18  H16  SING  N  N  42  
O7B  C18  H17  SING  N  N  43  
O7B  C19  H18  SING  N  N  44  
O7B  C19  H19  SING  N  N  45  
O7B  C20  H20  SING  N  N  46  
O7B  C21  H21  SING  N  N  47  
O7B  C21  H22  SING  N  N  48  
O7B  C22  H23  SING  N  N  49  
O7B  C22  H24  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O7B  InChI             InChI                 1.03   "InChI=1S/C19H24N2O/c22-19-16-6-2-4-14-3-1-5-15(18(14)16)11-21(19)17-12-20-9-7-13(17)8-10-20/h2,4,6,13,15,17H,1,3,5,7-12H2/t15-,17-/m1/s1"  
O7B  InChIKey          InChI                 1.03   CPZBLNMUGSZIPR-NVXWUHKLSA-N  
O7B  SMILES_CANONICAL  CACTVS                3.385  "O=C1N(C[C@H]2CCCc3cccc1c23)[C@@H]4CN5CCC4CC5"  
O7B  SMILES            CACTVS                3.385  "O=C1N(C[CH]2CCCc3cccc1c23)[CH]4CN5CCC4CC5"  
O7B  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2c3c(c1)C(=O)N(C[C@H]3CCC2)[C@@H]4CN5CCC4CC5"  
O7B  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2c3c(c1)C(=O)N(CC3CCC2)C4CN5CCC4CC5"  
#
_pdbx_chem_comp_identifier.comp_id          O7B
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O7B  "Create component"  2020-02-17  PDBE  
O7B  "Initial release"   2020-03-04  RCSB  
O7B  "Modify synonyms"   2020-03-03  PDBE  
O7B  "Modify synonyms"   2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  O7B  Palonosetron  ?  ?  
2  O7B  Aloxi         ?  ?  
##
