data_NXB
#

_chem_comp.id                                   NXB
_chem_comp.name                                 "(2~{R},3~{R},4~{R},5~{R})-2-[(6-aminopurin-9-yl)methyl]-5-azanyl-oxane-3,4-diol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H16 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-02
_chem_comp.pdbx_modified_date                   2020-02-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       280.283
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NXB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TU1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NXB  C10  C1   C  0  1  Y  N  N  40.046  -39.136  27.769  -3.394  -2.098  -0.321  C10  NXB   1  
NXB  C17  C2   C  0  1  N  N  R  44.568  -34.697  25.640   2.530  -0.886   0.566  C17  NXB   2  
NXB  C02  C3   C  0  1  N  N  R  43.572  -32.538  24.573   3.679   0.438  -1.209  C02  NXB   3  
NXB  C03  C4   C  0  1  N  N  N  42.375  -33.462  24.396   2.314   1.025  -1.586  C03  NXB   4  
NXB  C05  C5   C  0  1  N  N  R  43.223  -35.289  25.286   1.211  -0.249   0.121  C05  NXB   5  
NXB  C06  C6   C  0  1  N  N  N  42.957  -36.449  26.240   0.278  -0.110   1.326  C06  NXB   6  
NXB  C08  C7   C  0  1  Y  N  N  41.424  -38.223  26.199  -2.060  -0.367   0.393  C08  NXB   7  
NXB  C12  C8   C  0  1  Y  N  N  40.047  -40.060  25.639  -4.292   0.025  -0.430  C12  NXB   8  
NXB  C14  C9   C  0  1  Y  N  N  40.983  -39.154  25.231  -3.095   0.537   0.098  C14  NXB   9  
NXB  C16  C10  C  0  1  Y  N  N  42.549  -37.745  24.331  -1.431   1.690   0.874  C16  NXB  10  
NXB  C19  C11  C  0  1  N  N  R  44.819  -33.331  24.981   3.480  -0.967  -0.633  C19  NXB  11  
NXB  N01  N1   N  0  1  N  N  N  43.243  -31.502  25.532   4.320   1.294  -0.202  N01  NXB  12  
NXB  N07  N2   N  0  1  Y  N  N  42.265  -37.529  25.559  -1.025   0.389   0.881  N07  NXB  13  
NXB  N09  N3   N  0  1  Y  N  N  40.970  -38.219  27.437  -2.252  -1.663   0.170  N09  NXB  14  
NXB  N11  N4   N  0  1  Y  N  N  39.602  -40.034  26.876  -4.392  -1.286  -0.619  N11  NXB  15  
NXB  N13  N5   N  0  1  N  N  N  39.537  -41.042  24.700  -5.344   0.868  -0.744  N13  NXB  16  
NXB  N15  N6   N  0  1  Y  N  N  41.756  -38.809  23.972  -2.646   1.775   0.415  N15  NXB  17  
NXB  O04  O1   O  0  1  N  N  N  42.277  -34.300  25.509   1.469   1.043  -0.433  O04  NXB  18  
NXB  O18  O2   O  0  1  N  N  N  44.615  -34.631  27.036   3.123  -0.088   1.592  O18  NXB  19  
NXB  O20  O3   O  0  1  N  N  N  45.599  -32.541  25.818   4.739  -1.494  -0.210  O20  NXB  20  
NXB  H1   H1   H  0  1  N  N  N  39.653  -39.151  28.775  -3.516  -3.157  -0.491  H1   NXB  21  
NXB  H2   H2   H  0  1  N  N  N  45.346  -35.387  25.281   2.339  -1.888   0.948  H2   NXB  22  
NXB  H3   H3   H  0  1  N  N  N  43.779  -32.067  23.601   4.311   0.382  -2.095  H3   NXB  23  
NXB  H4   H4   H  0  1  N  N  N  41.457  -32.863  24.304   2.445   2.042  -1.956  H4   NXB  24  
NXB  H5   H5   H  0  1  N  N  N  42.509  -34.069  23.488   1.855   0.412  -2.361  H5   NXB  25  
NXB  H6   H6   H  0  1  N  N  N  43.221  -35.644  24.245   0.739  -0.879  -0.633  H6   NXB  26  
NXB  H7   H7   H  0  1  N  N  N  43.916  -36.823  26.629   0.152  -1.083   1.801  H7   NXB  27  
NXB  H8   H8   H  0  1  N  N  N  42.336  -36.093  27.076   0.711   0.590   2.041  H8   NXB  28  
NXB  H9   H9   H  0  1  N  N  N  43.255  -37.210  23.713  -0.832   2.528   1.202  H9   NXB  29  
NXB  H10  H10  H  0  1  N  N  N  45.385  -33.526  24.058   3.049  -1.616  -1.396  H10  NXB  30  
NXB  H11  H11  H  0  1  N  N  N  44.028  -30.894  25.649   5.255   0.975   0.002  H11  NXB  31  
NXB  H12  H12  H  0  1  N  N  N  42.461  -30.975  25.199   4.325   2.259  -0.498  H12  NXB  32  
NXB  H14  H14  H  0  1  N  N  N  38.858  -41.618  25.155  -6.166   0.502  -1.108  H14  NXB  33  
NXB  H15  H15  H  0  1  N  N  N  39.112  -40.573  23.926  -5.260   1.823  -0.602  H15  NXB  34  
NXB  H16  H16  H  0  1  N  N  N  44.455  -35.494  27.400   3.965  -0.432   1.921  H16  NXB  35  
NXB  H17  H17  H  0  1  N  N  N  46.375  -33.024  26.077   5.393  -1.567  -0.919  H17  NXB  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NXB  N15  C16  DOUB  Y  N   1  
NXB  N15  C14  SING  Y  N   2  
NXB  C16  N07  SING  Y  N   3  
NXB  C03  C02  SING  N  N   4  
NXB  C03  O04  SING  N  N   5  
NXB  C02  C19  SING  N  N   6  
NXB  C02  N01  SING  N  N   7  
NXB  N13  C12  SING  N  N   8  
NXB  C19  C17  SING  N  N   9  
NXB  C19  O20  SING  N  N  10  
NXB  C14  C12  DOUB  Y  N  11  
NXB  C14  C08  SING  Y  N  12  
NXB  C05  O04  SING  N  N  13  
NXB  C05  C17  SING  N  N  14  
NXB  C05  C06  SING  N  N  15  
NXB  N07  C08  SING  Y  N  16  
NXB  N07  C06  SING  N  N  17  
NXB  C12  N11  SING  Y  N  18  
NXB  C17  O18  SING  N  N  19  
NXB  C08  N09  DOUB  Y  N  20  
NXB  N11  C10  DOUB  Y  N  21  
NXB  N09  C10  SING  Y  N  22  
NXB  C10  H1   SING  N  N  23  
NXB  C17  H2   SING  N  N  24  
NXB  C02  H3   SING  N  N  25  
NXB  C03  H4   SING  N  N  26  
NXB  C03  H5   SING  N  N  27  
NXB  C05  H6   SING  N  N  28  
NXB  C06  H7   SING  N  N  29  
NXB  C06  H8   SING  N  N  30  
NXB  C16  H9   SING  N  N  31  
NXB  C19  H10  SING  N  N  32  
NXB  N01  H11  SING  N  N  33  
NXB  N01  H12  SING  N  N  34  
NXB  N13  H14  SING  N  N  35  
NXB  N13  H15  SING  N  N  36  
NXB  O18  H16  SING  N  N  37  
NXB  O20  H17  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NXB  InChI             InChI                 1.03   "InChI=1S/C11H16N6O3/c12-5-2-20-6(9(19)8(5)18)1-17-4-16-7-10(13)14-3-15-11(7)17/h3-6,8-9,18-19H,1-2,12H2,(H2,13,14,15)/t5-,6-,8-,9+/m1/s1"  
NXB  InChIKey          InChI                 1.03   YFNWLMALNRKCLH-GCXDCGAKSA-N  
NXB  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H]1CO[C@H](Cn2cnc3c(N)ncnc23)[C@H](O)[C@@H]1O"  
NXB  SMILES            CACTVS                3.385  "N[CH]1CO[CH](Cn2cnc3c(N)ncnc23)[CH](O)[CH]1O"  
NXB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C[C@@H]3[C@@H]([C@@H]([C@@H](CO3)N)O)O)N"  
NXB  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)CC3C(C(C(CO3)N)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          NXB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R},4~{R},5~{R})-2-[(6-aminopurin-9-yl)methyl]-5-azanyl-oxane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NXB  "Create component"  2020-01-02  PDBE  
NXB  "Initial release"   2020-03-04  RCSB  
##
