data_N0B
# 
_chem_comp.id                                    N0B 
_chem_comp.name                                  "Adenylated Norbornene" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H36 N7 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-07-01 
_chem_comp.pdbx_modified_date                    2013-07-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        625.568 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N0B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4BWA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N0B C1     C1     C 0 1 N N N 43.019 133.065 -11.253 -0.172 -3.966 -0.649 C1     N0B 1  
N0B N1     N1     N 0 1 Y N N 35.889 125.423 -11.734 -7.614 5.462  -0.783 N1     N0B 2  
N0B C2     C2     C 0 1 Y N N 36.026 125.396 -10.338 -7.676 5.111  0.488  C2     N0B 3  
N0B O2     O2     O 0 1 N N N 42.253 133.089 -12.217 -0.309 -5.032 -0.097 O2     N0B 4  
N0B C3     C3     C 0 1 N N R 43.240 134.289 -10.428 1.124  -3.639 -1.345 C3     N0B 5  
N0B N3     N3     N 0 1 Y N N 37.018 126.152 -9.762  -7.178 3.977  0.934  N3     N0B 6  
N0B C4     C4     C 0 1 Y N N 37.826 126.896 -10.559 -6.582 3.127  0.105  C4     N0B 7  
N0B N4     N4     N 0 1 N N N 43.533 135.322 -11.428 1.851  -4.882 -1.635 N4     N0B 8  
N0B C5     C5     C 0 1 Y N N 37.683 126.909 -11.902 -6.489 3.454  -1.258 C5     N0B 9  
N0B C6     C6     C 0 1 Y N N 36.727 126.168 -12.468 -7.036 4.676  -1.686 C6     N0B 10 
N0B N6     N6     N 0 1 N N N 36.597 126.232 -13.784 -6.976 5.051  -3.017 N6     N0B 11 
N0B C7     C7     C 0 1 N N N 44.387 134.021 -9.432  1.977  -2.747 -0.442 C7     N0B 12 
N0B N7     N7     N 0 1 Y N N 38.595 127.736 -12.419 -5.845 2.432  -1.871 N7     N0B 13 
N0B C8     C8     C 0 1 Y N N 39.308 128.223 -11.400 -5.544 1.521  -0.992 C8     N0B 14 
N0B C9     C9     C 0 1 N N N 44.467 135.225 -8.502  3.236  -2.313 -1.196 C9     N0B 15 
N0B N9     N9     N 0 1 Y N N 38.854 127.688 -10.248 -5.977 1.903  0.243  N9     N0B 16 
N0B PA     PA     P 0 1 N N N 43.064 130.668 -10.976 -2.530 -3.501 0.114  PA     N0B 17 
N0B "C1'"  "C1'"  C 0 1 N N R 39.192 127.870 -8.815  -5.825 1.146  1.488  "C1'"  N0B 18 
N0B C10    C10    C 0 1 N N N 45.945 135.276 -8.177  4.090  -1.421 -0.293 C10    N0B 19 
N0B C11    C11    C 0 1 N N N 46.256 136.586 -7.513  5.348  -0.988 -1.047 C11    N0B 20 
N0B N12    N12    N 0 1 N N N 45.922 137.643 -8.459  6.166  -0.133 -0.182 N12    N0B 21 
N0B O1A    O1A    O 0 1 N N N 43.961 129.670 -10.377 -2.213 -3.887 1.508  O1A    N0B 22 
N0B "C2'"  "C2'"  C 0 1 N N R 40.362 127.079 -8.249  -7.137 0.408  1.832  "C2'"  N0B 23 
N0B "O2'"  "O2'"  O 0 1 N N N 40.026 126.602 -6.975  -7.316 0.339  3.248  "O2'"  N0B 24 
N0B C22    C22    C 0 1 N N N 45.524 138.802 -7.978  7.330  0.370  -0.638 C22    N0B 25 
N0B O23    O23    O 0 1 N N N 45.469 138.980 -6.754  7.702  0.115  -1.767 O23    N0B 26 
N0B O24    O24    O 0 1 N N N 45.138 139.772 -8.818  8.082  1.155  0.157  O24    N0B 27 
N0B C25    C25    C 0 1 N N N 45.953 140.942 -8.631  9.323  1.662  -0.400 C25    N0B 28 
N0B C26    C26    C 0 1 N N S 45.232 142.062 -9.338  10.034 2.527  0.642  C26    N0B 29 
N0B C27    C27    C 0 1 N N N 45.130 143.322 -8.400  10.498 1.664  1.841  C27    N0B 30 
N0B C28    C28    C 0 1 N N S 45.912 144.282 -9.225  12.052 1.826  1.834  C28    N0B 31 
N0B C29    C29    C 0 1 N N N 47.392 143.921 -9.199  12.493 1.134  0.538  C29    N0B 32 
N0B O2A    O2A    O 0 1 N N N 42.585 130.544 -12.372 -3.202 -4.750 -0.648 O2A    N0B 33 
N0B "C3'"  "C3'"  C 0 1 N N R 41.402 128.111 -7.909  -6.938 -1.006 1.242  "C3'"  N0B 34 
N0B "O3'"  "O3'"  O 0 1 N N N 42.683 127.588 -8.152  -7.924 -1.275 0.243  "O3'"  N0B 35 
N0B C30    C30    C 0 1 N N N 47.453 142.983 -10.170 12.098 1.868  -0.482 C30    N0B 36 
N0B C31    C31    C 0 1 N N S 46.016 142.589 -10.533 11.366 3.101  0.062  C31    N0B 37 
N0B C32    C32    C 0 1 N N N 45.446 143.945 -10.622 12.178 3.329  1.390  C32    N0B 38 
N0B O3A    O3A    O 0 1 N N N 43.755 132.006 -10.860 -1.176 -3.075 -0.645 O3A    N0B 39 
N0B "C4'"  "C4'"  C 0 1 N N S 41.021 129.131 -8.905  -5.529 -0.955 0.611  "C4'"  N0B 40 
N0B "O4'"  "O4'"  O 0 1 N N N 39.574 129.221 -8.684  -4.844 0.099  1.323  "O4'"  N0B 41 
N0B "C5'"  "C5'"  C 0 1 N N N 41.772 130.431 -8.715  -4.807 -2.289 0.810  "C5'"  N0B 42 
N0B "O5'"  "O5'"  O 0 1 N N N 41.781 130.878 -10.038 -3.555 -2.260 0.120  "O5'"  N0B 43 
N0B H2     H2     H 0 1 N N N 35.367 124.795 -9.730  -8.154 5.780  1.189  H2     N0B 44 
N0B H3     H3     H 0 1 N N N 42.325 134.541 -9.872  0.913  -3.116 -2.278 H3     N0B 45 
N0B HN4    HN4    H 0 1 N N N 43.699 136.194 -10.968 2.059  -5.386 -0.786 HN4    N0B 46 
N0B HN4A   HN4A   H 0 0 N N N 44.346 135.061 -11.949 1.336  -5.460 -2.282 HN4A   N0B 47 
N0B HN6    HN6    H 0 1 N N N 35.824 125.666 -14.071 -7.357 5.897  -3.300 HN6    N0B 48 
N0B HN6A   HN6A   H 0 0 N N N 36.435 127.180 -14.057 -6.552 4.469  -3.666 HN6A   N0B 49 
N0B H7     H7     H 0 1 N N N 44.177 133.110 -8.852  1.404  -1.866 -0.155 H7     N0B 50 
N0B H7A    H7A    H 0 1 N N N 45.336 133.900 -9.974  2.263  -3.302 0.452  H7A    N0B 51 
N0B H8     H8     H 0 1 N N N 40.118 128.932 -11.485 -5.027 0.598  -1.209 H8     N0B 52 
N0B H9     H9     H 0 1 N N N 44.138 136.144 -9.009  3.809  -3.195 -1.483 H9     N0B 53 
N0B H9A    H9A    H 0 1 N N N 43.864 135.070 -7.595  2.951  -1.758 -2.090 H9A    N0B 54 
N0B "H1'"  "H1'"  H 0 1 N N N 38.300 127.666 -8.204  -5.538 1.811  2.303  "H1'"  N0B 55 
N0B H10    H10    H 0 1 N N N 46.202 134.449 -7.499  3.516  -0.540 -0.006 H10    N0B 56 
N0B H10A   H10A   H 0 0 N N N 46.530 135.185 -9.104  4.375  -1.976 0.601  H10A   N0B 57 
N0B H11    H11    H 0 1 N N N 45.655 136.696 -6.598  5.922  -1.869 -1.334 H11    N0B 58 
N0B H11A   H11A   H 0 0 N N N 47.325 136.634 -7.257  5.063  -0.433 -1.941 H11A   N0B 59 
N0B HN12   HN12   H 0 0 N N N 45.993 137.492 -9.445  5.870  0.070  0.719  HN12   N0B 60 
N0B "H2'"  "H2'"  H 0 1 N N N 40.731 126.312 -8.945  -7.988 0.903  1.364  "H2'"  N0B 61 
N0B "HO2'" "HO2'" H 0 0 N N N 40.755 126.108 -6.619  -8.125 -0.115 3.521  "HO2'" N0B 62 
N0B H25    H25    H 0 1 N N N 46.057 141.169 -7.560  9.965  0.825  -0.677 H25    N0B 63 
N0B H25A   H25A   H 0 0 N N N 46.949 140.789 -9.072  9.106  2.262  -1.284 H25A   N0B 64 
N0B H26    H26    H 0 1 N N N 44.225 141.744 -9.647  9.382  3.332  0.979  H26    N0B 65 
N0B H27    H27    H 0 1 N N N 44.089 143.650 -8.259  10.078 2.044  2.772  H27    N0B 66 
N0B H27A   H27A   H 0 0 N N N 45.595 143.146 -7.419  10.221 0.620  1.692  H27A   N0B 67 
N0B H28    H28    H 0 1 N N N 45.729 145.333 -8.956  12.573 1.527  2.743  H28    N0B 68 
N0B H29    H29    H 0 1 N N N 48.181 144.310 -8.573  13.035 0.202  0.473  H29    N0B 69 
N0B "H3'"  "H3'"  H 0 1 N N N 41.278 128.480 -6.880  -6.978 -1.758 2.030  "H3'"  N0B 70 
N0B "HO3'" "HO3'" H 0 0 N N N 43.338 128.241 -7.937  -8.833 -1.260 0.574  "HO3'" N0B 71 
N0B H30    H30    H 0 1 N N N 48.353 142.582 -10.612 12.262 1.641  -1.525 H30    N0B 72 
N0B H31    H31    H 0 1 N N N 45.928 141.978 -11.444 11.271 3.947  -0.618 H31    N0B 73 
N0B H32    H32    H 0 1 N N N 44.352 143.958 -10.739 11.674 4.011  2.075  H32    N0B 74 
N0B H32A   H32A   H 0 0 N N N 45.906 144.568 -11.404 13.210 3.624  1.202  H32A   N0B 75 
N0B "H4'"  "H4'"  H 0 1 N N N 41.218 128.748 -9.917  -5.597 -0.714 -0.450 "H4'"  N0B 76 
N0B "H5'"  "H5'"  H 0 1 N N N 41.235 131.123 -8.050  -4.632 -2.452 1.873  "H5'"  N0B 77 
N0B "H5'A" "H5'A" H 0 0 N N N 42.789 130.267 -8.329  -5.421 -3.097 0.414  "H5'A" N0B 78 
N0B H2A    H2A    H 0 1 N N N 42.338 131.401 -12.700 -3.437 -4.569 -1.569 H2A    N0B 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N0B C1    O2     DOUB N N 1  
N0B C1    C3     SING N N 2  
N0B C1    O3A    SING N N 3  
N0B N1    C2     DOUB Y N 4  
N0B N1    C6     SING Y N 5  
N0B C2    N3     SING Y N 6  
N0B C3    N4     SING N N 7  
N0B C3    C7     SING N N 8  
N0B N3    C4     DOUB Y N 9  
N0B C4    C5     SING Y N 10 
N0B C4    N9     SING Y N 11 
N0B C5    C6     DOUB Y N 12 
N0B C5    N7     SING Y N 13 
N0B C6    N6     SING N N 14 
N0B C7    C9     SING N N 15 
N0B N7    C8     DOUB Y N 16 
N0B C8    N9     SING Y N 17 
N0B C9    C10    SING N N 18 
N0B N9    "C1'"  SING N N 19 
N0B PA    O1A    DOUB N N 20 
N0B PA    O2A    SING N N 21 
N0B PA    O3A    SING N N 22 
N0B PA    "O5'"  SING N N 23 
N0B "C1'" "C2'"  SING N N 24 
N0B "C1'" "O4'"  SING N N 25 
N0B C10   C11    SING N N 26 
N0B C11   N12    SING N N 27 
N0B N12   C22    SING N N 28 
N0B "C2'" "O2'"  SING N N 29 
N0B "C2'" "C3'"  SING N N 30 
N0B C22   O23    DOUB N N 31 
N0B C22   O24    SING N N 32 
N0B O24   C25    SING N N 33 
N0B C25   C26    SING N N 34 
N0B C26   C27    SING N N 35 
N0B C26   C31    SING N N 36 
N0B C27   C28    SING N N 37 
N0B C28   C29    SING N N 38 
N0B C28   C32    SING N N 39 
N0B C29   C30    DOUB N N 40 
N0B "C3'" "O3'"  SING N N 41 
N0B "C3'" "C4'"  SING N N 42 
N0B C30   C31    SING N N 43 
N0B C31   C32    SING N N 44 
N0B "C4'" "O4'"  SING N N 45 
N0B "C4'" "C5'"  SING N N 46 
N0B "C5'" "O5'"  SING N N 47 
N0B C2    H2     SING N N 48 
N0B C3    H3     SING N N 49 
N0B N4    HN4    SING N N 50 
N0B N4    HN4A   SING N N 51 
N0B N6    HN6    SING N N 52 
N0B N6    HN6A   SING N N 53 
N0B C7    H7     SING N N 54 
N0B C7    H7A    SING N N 55 
N0B C8    H8     SING N N 56 
N0B C9    H9     SING N N 57 
N0B C9    H9A    SING N N 58 
N0B "C1'" "H1'"  SING N N 59 
N0B C10   H10    SING N N 60 
N0B C10   H10A   SING N N 61 
N0B C11   H11    SING N N 62 
N0B C11   H11A   SING N N 63 
N0B N12   HN12   SING N N 64 
N0B "C2'" "H2'"  SING N N 65 
N0B "O2'" "HO2'" SING N N 66 
N0B C25   H25    SING N N 67 
N0B C25   H25A   SING N N 68 
N0B C26   H26    SING N N 69 
N0B C27   H27    SING N N 70 
N0B C27   H27A   SING N N 71 
N0B C28   H28    SING N N 72 
N0B C29   H29    SING N N 73 
N0B "C3'" "H3'"  SING N N 74 
N0B "O3'" "HO3'" SING N N 75 
N0B C30   H30    SING N N 76 
N0B C31   H31    SING N N 77 
N0B C32   H32    SING N N 78 
N0B C32   H32A   SING N N 79 
N0B "C4'" "H4'"  SING N N 80 
N0B "C5'" "H5'"  SING N N 81 
N0B "C5'" "H5'A" SING N N 82 
N0B O2A   H2A    SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N0B SMILES           ACDLabs              12.01 "O=C(OCC2CC1C=CC2C1)NCCCCC(N)C(=O)OP([O-])(=O)OCC5OC(n4cnc3c(ncnc34)N)C(O)C5O" 
N0B InChI            InChI                1.03  
;InChI=1S/C25H36N7O10P/c26-16(3-1-2-6-28-25(36)39-9-15-8-13-4-5-14(15)7-13)24(35)42-43(37,38)40-10-17-19(33)20(34)23(41-17)32-12-31-18-21(27)29-11-30-22(18)32/h4-5,11-17,19-20,23,33-34H,1-3,6-10,26H2,(H,28,36)(H,37,38)(H2,27,29,30)/p-1/t13-,14+,15+,16+,17-,19-,20+,23+/m0/s1
;
N0B InChIKey         InChI                1.03  MYIVZOBPRNLOTH-PEZDGLODSA-M 
N0B SMILES_CANONICAL CACTVS               3.385 "N[C@H](CCCCNC(=O)OC[C@H]1C[C@@H]2C[C@H]1C=C2)C(=O)O[P](O)(=O)OC[C@@H]3O[C@H]([C@H](O)[C@H]3O)n4cnc5c(N)ncnc45" 
N0B SMILES           CACTVS               3.385 "N[CH](CCCCNC(=O)OC[CH]1C[CH]2C[CH]1C=C2)C(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45" 
N0B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]([C@@H](O3)COP(=O)(O)OC(=O)[C@@H](CCCCNC(=O)OC[C@H]4C[C@@H]5C[C@H]4C=C5)N)O)O)N" 
N0B SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)C(CCCCNC(=O)OCC4CC5CC4C=C5)N)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N0B "SYSTEMATIC NAME" ACDLabs              12.01 "9-[5-O-({[(2R)-2-amino-6-({[(1S,2S,4S)-bicyclo[2.2.1]hept-5-en-2-ylmethoxy]carbonyl}amino)hexanoyl]oxy}phosphinato)-alpha-L-arabinofuranosyl]-9H-purin-6-amine"                          
N0B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2S,3R,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2R)-2-azanyl-6-[[(1S,4S,5S)-5-bicyclo[2.2.1]hept-2-enyl]methoxycarbonylamino]hexanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N0B "Create component" 2013-07-01 EBI  
N0B "Initial release"  2013-07-31 RCSB 
# 
