data_J1B
# 
_chem_comp.id                                    J1B 
_chem_comp.name                                  "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H38 N12 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-11-11 
_chem_comp.pdbx_modified_date                    2011-12-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        614.723 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J1B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3UDE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J1B C1   C1   C 0 1 N N S 2.156  17.073 15.706 3.560   0.221  -1.016 C1   J1B 1  
J1B N1   N1   N 0 1 Y N N 2.748  14.373 13.534 6.955   0.492  0.140  N1   J1B 2  
J1B O1   O1   O 0 1 N N N 2.269  16.433 14.454 4.580   0.248  -0.005 O1   J1B 3  
J1B S1   S1   S 0 1 N N N 4.119  19.061 15.418 1.774   -0.942 0.698  S1   J1B 4  
J1B C2   C2   C 0 1 N N S 3.154  16.327 16.593 4.271   0.201  -2.384 C2   J1B 5  
J1B N2   N2   N 0 1 Y N N 2.591  13.189 11.577 8.318   -0.631 1.423  N2   J1B 6  
J1B O2   O2   O 0 1 N N N 2.683  16.268 17.909 3.886   1.334  -3.164 O2   J1B 7  
J1B C3   C3   C 0 1 N N R 3.208  14.885 15.959 5.776   0.273  -2.030 C3   J1B 8  
J1B N3   N3   N 0 1 N N N 4.870  12.770 9.799  11.192  0.282  2.020  N3   J1B 9  
J1B O3   O3   O 0 1 N N N 2.659  13.914 16.824 6.469   1.145  -2.925 O3   J1B 10 
J1B C4   C4   C 0 1 N N R 2.290  15.026 14.741 5.745   0.863  -0.597 C4   J1B 11 
J1B N4   N4   N 0 1 Y N N 6.162  14.048 11.352 10.640  2.100  0.622  N4   J1B 12 
J1B C5   C5   C 0 1 Y N N 1.917  13.631 12.645 7.119   -0.616 0.917  C5   J1B 13 
J1B N5   N5   N 0 1 Y N N 5.150  14.991 13.392 8.569   2.322  -0.380 N5   J1B 14 
J1B O5   O5   O 0 1 N N N 9.579  24.929 7.160  -5.845  2.327  1.922  O5   J1B 15 
J1B C6   C6   C 0 1 Y N N 3.883  13.654 11.773 8.999   0.461  1.000  C6   J1B 16 
J1B N6   N6   N 0 1 N N N 5.496  20.189 11.742 -1.705  -3.856 0.891  N6   J1B 17 
J1B C7   C7   C 0 1 Y N N 4.998  13.491 10.970 10.295  0.961  1.214  C7   J1B 18 
J1B C8   C8   C 0 1 Y N N 6.174  14.754 12.524 9.793   2.751  -0.154 C8   J1B 19 
J1B N8   N8   N 0 1 N N N 7.398  28.199 6.062  -9.416  2.298  0.209  N8   J1B 20 
J1B C9   C9   C 0 1 Y N N 4.005  14.397 12.969 8.134   1.194  0.171  C9   J1B 21 
J1B N9   N9   N 0 1 N N N 9.005  28.503 4.432  -9.902  4.342  1.186  N9   J1B 22 
J1B C10  C10  C 0 1 N N N 2.411  18.562 15.620 2.703   -1.037 -0.857 C10  J1B 23 
J1B N10  N10  N 0 1 N N N 9.259  26.677 5.857  -7.817  3.324  1.577  N10  J1B 24 
J1B C11  C11  C 0 1 N N N 4.835  18.368 13.894 0.835   -2.495 0.707  C11  J1B 25 
J1B N11  N11  N 0 1 N N N 7.191  25.539 8.620  -6.489  0.195  0.308  N11  J1B 26 
J1B C12  C12  C 0 1 N N N 3.938  18.691 12.733 0.081   -2.629 2.033  C12  J1B 27 
J1B N12  N12  N 0 1 N N N 5.816  27.834 7.745  -8.992  0.197  -0.802 N12  J1B 28 
J1B C13  C13  C 0 1 N N N 4.135  20.124 12.315 -0.757  -3.909 2.010  C13  J1B 29 
J1B C14  C14  C 0 1 N N N 6.483  20.152 12.825 -1.003  -3.775 -0.397 C14  J1B 30 
J1B C15  C15  C 0 1 N N N 6.277  18.860 13.701 -0.172  -2.490 -0.446 C15  J1B 31 
J1B C16  C16  C 0 1 N N N 5.572  21.304 10.727 -2.644  -2.738 1.049  C16  J1B 32 
J1B C18  C18  C 0 1 N N N 5.664  24.981 10.336 -5.789  -1.824 -0.814 C18  J1B 33 
J1B C19  C19  C 0 1 N N N 8.534  27.773 5.480  -9.039  3.300  0.980  C19  J1B 34 
J1B C20  C20  C 0 1 N N N 8.847  25.875 6.923  -6.940  2.314  1.385  C20  J1B 35 
J1B C21  C21  C 0 1 N N N 6.062  25.852 9.174  -6.731  -0.663 -0.620 C21  J1B 36 
J1B C22  C22  C 0 1 N N N 5.191  27.064 8.830  -7.934  -0.533 -1.518 C22  J1B 37 
J1B C23  C23  C 0 1 N N N 4.977  27.992 10.016 -8.441  -1.925 -1.899 C23  J1B 38 
J1B C24  C24  C 0 1 N N N 3.820  26.623 8.335  -7.548  0.236  -2.783 C24  J1B 39 
J1B C25  C25  C 0 1 N N N 6.968  27.429 7.116  -8.605  1.268  -0.018 C25  J1B 40 
J1B C26  C26  C 0 1 N N N 7.642  26.310 7.558  -7.323  1.246  0.550  C26  J1B 41 
J1B C27  C27  C 0 1 N N N 5.837  22.720 11.246 -3.761  -2.859 0.011  C27  J1B 42 
J1B N28  N28  N 0 1 N N N 6.027  23.582 10.088 -4.701  -1.740 0.169  N28  J1B 43 
J1B H1   H1   H 0 1 N N N 1.137  17.025 16.118 2.935   1.110  -0.937 H1   J1B 44 
J1B H2   H2   H 0 1 N N N 4.140  16.812 16.636 4.046   -0.723 -2.917 H2   J1B 45 
J1B HO2  HO2  H 0 1 N N N 3.310  15.803 18.450 4.304   1.372  -4.035 HO2  J1B 46 
J1B H3   H3   H 0 1 N N N 4.237  14.564 15.738 6.224   -0.720 -2.032 H3   J1B 47 
J1B HN3  HN3  H 0 1 N N N 5.750  12.745 9.324  12.084  0.637  2.159  HN3  J1B 48 
J1B HN3A HN3A H 0 0 N N N 4.580  11.837 10.012 10.929  -0.548 2.446  HN3A J1B 49 
J1B HO3  HO3  H 0 1 N N N 2.707  13.059 16.412 6.439   0.864  -3.850 HO3  J1B 50 
J1B H4   H4   H 0 1 N N N 1.327  14.560 14.996 5.633   1.947  -0.628 H4   J1B 51 
J1B H5   H5   H 0 1 N N N 0.866  13.447 12.814 6.365   -1.369 1.089  H5   J1B 52 
J1B H8   H8   H 0 1 N N N 7.126  15.183 12.799 10.114  3.673  -0.615 H8   J1B 53 
J1B HN9  HN9  H 0 1 N N N 8.510  29.317 4.127  -10.777 4.338  0.767  HN9  J1B 54 
J1B HN9A HN9A H 0 0 N N N 9.846  28.226 3.967  -9.639  5.086  1.751  HN9A J1B 55 
J1B H10  H10  H 0 1 N N N 1.855  18.939 14.749 2.007   -1.110 -1.693 H10  J1B 56 
J1B H10A H10A H 0 0 N N N 2.048  19.011 16.556 3.347   -1.916 -0.843 H10A J1B 57 
J1B HN10 HN10 H 0 0 N N N 10.097 26.446 5.362  -7.573  4.073  2.144  HN10 J1B 58 
J1B H11  H11  H 0 1 N N N 4.896  17.272 13.968 1.520   -3.335 0.590  H11  J1B 59 
J1B H12  H12  H 0 1 N N N 4.182  18.029 11.889 0.795   -2.676 2.855  H12  J1B 60 
J1B H12A H12A H 0 0 N N N 2.890  18.539 13.030 -0.574  -1.768 2.168  H12A J1B 61 
J1B HN12 HN12 H 0 0 N N N 5.125  27.882 7.024  -9.924  -0.063 -0.876 HN12 J1B 62 
J1B H13  H13  H 0 1 N N N 4.043  20.798 13.179 -1.306  -4.001 2.947  H13  J1B 63 
J1B H13A H13A H 0 0 N N N 3.383  20.419 11.568 -0.100  -4.771 1.889  H13A J1B 64 
J1B H14  H14  H 0 1 N N N 7.495  20.140 12.394 -0.345  -4.637 -0.506 H14  J1B 65 
J1B H14A H14A H 0 0 N N N 6.360  21.043 13.458 -1.731  -3.768 -1.208 H14A J1B 66 
J1B H15  H15  H 0 1 N N N 6.678  19.082 14.701 -0.831  -1.627 -0.350 H15  J1B 67 
J1B H15A H15A H 0 0 N N N 6.831  18.047 13.210 0.361   -2.438 -1.395 H15A J1B 68 
J1B H16  H16  H 0 1 N N N 6.397  21.056 10.042 -3.075  -2.764 2.050  H16  J1B 69 
J1B H16A H16A H 0 0 N N N 4.602  21.331 10.210 -2.115  -1.796 0.906  H16A J1B 70 
J1B H18  H18  H 0 1 N N N 6.183  25.331 11.241 -6.332  -2.759 -0.676 H18  J1B 71 
J1B H18A H18A H 0 0 N N N 4.575  25.049 10.478 -5.373  -1.791 -1.820 H18A J1B 72 
J1B H23  H23  H 0 1 N N N 4.509  27.433 10.840 -9.316  -1.830 -2.543 H23  J1B 73 
J1B H23A H23A H 0 0 N N N 5.946  28.392 10.348 -7.657  -2.465 -2.430 H23A J1B 74 
J1B H23B H23B H 0 0 N N N 4.321  28.823 9.718  -8.712  -2.473 -0.996 H23B J1B 75 
J1B H24  H24  H 0 1 N N N 3.316  26.041 9.120  -7.184  1.227  -2.509 H24  J1B 76 
J1B H24A H24A H 0 0 N N N 3.216  27.509 8.091  -6.764  -0.305 -3.313 H24A J1B 77 
J1B H24B H24B H 0 0 N N N 3.938  26.000 7.436  -8.421  0.336  -3.428 H24B J1B 78 
J1B H27  H27  H 0 1 N N N 4.982  23.071 11.843 -3.331  -2.832 -0.990 H27  J1B 79 
J1B H27A H27A H 0 0 N N N 6.738  22.730 11.877 -4.290  -3.801 0.154  H27A J1B 80 
J1B HN28 HN28 H 0 0 N N N 5.452  23.238 9.345  -4.222  -0.854 0.105  HN28 J1B 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J1B C1  O1   SING N N 1  
J1B C1  C2   SING N N 2  
J1B C1  C10  SING N N 3  
J1B N1  C4   SING N N 4  
J1B N1  C5   SING Y N 5  
J1B N1  C9   SING Y N 6  
J1B O1  C4   SING N N 7  
J1B S1  C10  SING N N 8  
J1B S1  C11  SING N N 9  
J1B C2  O2   SING N N 10 
J1B C2  C3   SING N N 11 
J1B N2  C5   DOUB Y N 12 
J1B N2  C6   SING Y N 13 
J1B C3  O3   SING N N 14 
J1B C3  C4   SING N N 15 
J1B N3  C7   SING N N 16 
J1B N4  C7   DOUB Y N 17 
J1B N4  C8   SING Y N 18 
J1B N5  C8   DOUB Y N 19 
J1B N5  C9   SING Y N 20 
J1B O5  C20  DOUB N N 21 
J1B C6  C7   SING Y N 22 
J1B C6  C9   DOUB Y N 23 
J1B N6  C13  SING N N 24 
J1B N6  C14  SING N N 25 
J1B N6  C16  SING N N 26 
J1B N8  C19  DOUB N N 27 
J1B N8  C25  SING N N 28 
J1B N9  C19  SING N N 29 
J1B N10 C19  SING N N 30 
J1B N10 C20  SING N N 31 
J1B C11 C12  SING N N 32 
J1B C11 C15  SING N N 33 
J1B N11 C21  DOUB N N 34 
J1B N11 C26  SING N N 35 
J1B C12 C13  SING N N 36 
J1B N12 C22  SING N N 37 
J1B N12 C25  SING N N 38 
J1B C14 C15  SING N N 39 
J1B C16 C27  SING N N 40 
J1B C18 C21  SING N N 41 
J1B C18 N28  SING N N 42 
J1B C20 C26  SING N N 43 
J1B C21 C22  SING N N 44 
J1B C22 C23  SING N N 45 
J1B C22 C24  SING N N 46 
J1B C25 C26  DOUB N N 47 
J1B C27 N28  SING N N 48 
J1B C1  H1   SING N N 49 
J1B C2  H2   SING N N 50 
J1B O2  HO2  SING N N 51 
J1B C3  H3   SING N N 52 
J1B N3  HN3  SING N N 53 
J1B N3  HN3A SING N N 54 
J1B O3  HO3  SING N N 55 
J1B C4  H4   SING N N 56 
J1B C5  H5   SING N N 57 
J1B C8  H8   SING N N 58 
J1B N9  HN9  SING N N 59 
J1B N9  HN9A SING N N 60 
J1B C10 H10  SING N N 61 
J1B C10 H10A SING N N 62 
J1B N10 HN10 SING N N 63 
J1B C11 H11  SING N N 64 
J1B C12 H12  SING N N 65 
J1B C12 H12A SING N N 66 
J1B N12 HN12 SING N N 67 
J1B C13 H13  SING N N 68 
J1B C13 H13A SING N N 69 
J1B C14 H14  SING N N 70 
J1B C14 H14A SING N N 71 
J1B C15 H15  SING N N 72 
J1B C15 H15A SING N N 73 
J1B C16 H16  SING N N 74 
J1B C16 H16A SING N N 75 
J1B C18 H18  SING N N 76 
J1B C18 H18A SING N N 77 
J1B C23 H23  SING N N 78 
J1B C23 H23A SING N N 79 
J1B C23 H23B SING N N 80 
J1B C24 H24  SING N N 81 
J1B C24 H24A SING N N 82 
J1B C24 H24B SING N N 83 
J1B C27 H27  SING N N 84 
J1B C27 H27A SING N N 85 
J1B N28 HN28 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J1B SMILES           ACDLabs              12.01 "O=C2NC(=NC=1NC(C(=NC=12)CNCCN6CCC(SCC5OC(n4cnc3c(ncnc34)N)C(O)C5O)CC6)(C)C)N" 
J1B InChI            InChI                1.03  
;InChI=1S/C26H38N12O4S/c1-26(2)15(33-17-21(36-26)34-25(28)35-23(17)41)9-29-5-8-37-6-3-13(4-7-37)43-10-14-18(39)19(40)24(42-14)38-12-32-16-20(27)30-11-31-22(16)38/h11-14,18-19,24,29,39-40H,3-10H2,1-2H3,(H2,27,30,31)(H4,28,34,35,36,41)/t14-,18-,19-,24-/m1/s1
;
J1B InChIKey         InChI                1.03  SQZWJXDKQKNJEE-KYKAGHOCSA-N 
J1B SMILES_CANONICAL CACTVS               3.370 "CC1(C)NC2=C(N=C1CNCCN3CCC(CC3)SC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N" 
J1B SMILES           CACTVS               3.370 "CC1(C)NC2=C(N=C1CNCCN3CCC(CC3)SC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N" 
J1B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)CNCCN3CCC(CC3)SC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)C" 
J1B SMILES           "OpenEye OEToolkits" 1.7.2 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)CNCCN3CCC(CC3)SCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
J1B "SYSTEMATIC NAME" ACDLabs              12.01 "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine"                                                 
J1B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "6-[[2-[4-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]piperidin-1-yl]ethylamino]methyl]-2-azanyl-7,7-dimethyl-3,8-dihydropteridin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J1B "Create component" 2011-11-11 RCSB 
# 
