data_J0B
# 
_chem_comp.id                                    J0B 
_chem_comp.name                                  "1-[(3~{R})-3-(4-azanyl-3-iodanyl-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl]propan-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H17 I N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-01-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        400.218 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J0B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6QFT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J0B C12 C1  C 0 1 N N N N N N -22.054 14.351 -6.565 7.334  -0.059 1.570  C12 J0B 1  
J0B C1  C2  C 0 1 Y N N N N N -24.618 8.149  -4.736 -0.228 1.582  -0.316 C1  J0B 2  
J0B C5  C3  C 0 1 N N R N N N -25.560 10.441 -5.483 1.900  0.312  -0.764 C5  J0B 3  
J0B N4  N1  N 0 1 N N N N N N -24.060 4.427  -5.164 -3.828 1.945  0.422  N4  J0B 4  
J0B C3  C4  C 0 1 Y N N N N N -24.032 5.682  -4.655 -2.505 2.243  0.161  C3  J0B 5  
J0B C10 C5  C 0 1 N N N N N N -24.318 13.485 -6.123 4.982  -0.328 0.834  C10 J0B 6  
J0B N2  N2  N 0 1 Y N N N N N -25.285 8.985  -5.557 0.467  0.421  -0.479 N2  J0B 7  
J0B C6  C6  C 0 1 N N N N N N -27.061 10.675 -5.595 2.102  -0.419 -2.093 C6  J0B 8  
J0B C11 C7  C 0 1 N N N N N N -22.862 13.108 -6.263 6.420  -0.553 0.446  C11 J0B 9  
J0B N   N3  N 0 1 Y N N N N N -23.405 5.959  -3.490 -2.089 3.503  0.108  N   J0B 10 
J0B C   C8  C 0 1 Y N N N N N -23.375 7.206  -2.980 -0.826 3.797  -0.146 C   J0B 11 
J0B O   O1  O 0 1 N N N N N N -24.632 14.590 -5.712 4.714  0.177  1.903  O   J0B 12 
J0B C2  C9  C 0 1 Y N N N N N -24.689 6.811  -5.350 -1.564 1.218  -0.055 C2  J0B 13 
J0B C4  C10 C 0 1 Y N N N N N -25.469 7.063  -6.577 -1.619 -0.193 -0.078 C4  J0B 14 
J0B C7  C11 C 0 1 N N N N N N -27.375 12.166 -5.588 3.597  -0.505 -2.408 C7  J0B 15 
J0B C8  C12 C 0 1 N N N N N N -26.611 12.884 -6.694 4.302  -1.302 -1.306 C8  J0B 16 
J0B C9  C13 C 0 1 N N N N N N -24.861 11.156 -6.632 2.585  -0.476 0.357  C9  J0B 17 
J0B I   I1  I 0 1 N N N N N N -25.980 5.542  -8.004 -3.332 -1.357 0.240  I   J0B 18 
J0B N1  N4  N 0 1 Y N N N N N -23.952 8.275  -3.563 0.090  2.876  -0.348 N1  J0B 19 
J0B N3  N5  N 0 1 Y N N N N N -25.825 8.356  -6.704 -0.424 -0.649 -0.328 N3  J0B 20 
J0B N5  N6  N 0 1 N N N N N N -25.211 12.558 -6.462 3.993  -0.689 -0.008 N5  J0B 21 
J0B H1  H1  H 0 1 N N N N N N -20.992 14.083 -6.668 7.165  1.005  1.735  H1  J0B 22 
J0B H2  H2  H 0 1 N N N N N N -22.411 14.801 -7.503 7.115  -0.608 2.485  H2  J0B 23 
J0B H3  H3  H 0 1 N N N N N N -22.171 15.073 -5.744 8.375  -0.221 1.289  H3  J0B 24 
J0B H4  H4  H 0 1 N N N N N N -25.197 10.844 -4.526 2.335  1.309  -0.827 H4  J0B 25 
J0B H5  H5  H 0 1 N N N N N N -23.566 3.808  -4.554 -4.467 2.660  0.569  H5  J0B 26 
J0B H6  H6  H 0 1 N N N N N N -25.009 4.123  -5.250 -4.119 1.020  0.458  H6  J0B 27 
J0B H7  H7  H 0 1 N N N N N N -27.566 10.196 -4.743 1.687  -1.425 -2.022 H7  J0B 28 
J0B H8  H8  H 0 1 N N N N N N -27.426 10.233 -6.534 1.594  0.127  -2.889 H8  J0B 29 
J0B H9  H9  H 0 1 N N N N N N -22.746 12.385 -7.084 6.640  -0.003 -0.469 H9  J0B 30 
J0B H10 H10 H 0 1 N N N N N N -22.507 12.657 -5.325 6.590  -1.617 0.281  H10 J0B 31 
J0B H11 H11 H 0 1 N N N N N N -22.856 7.358  -2.045 -0.532 4.836  -0.180 H11 J0B 32 
J0B H12 H12 H 0 1 N N N N N N -27.086 12.591 -4.615 3.739  -1.004 -3.367 H12 J0B 33 
J0B H13 H13 H 0 1 N N N N N N -28.455 12.308 -5.744 4.016  0.500  -2.456 H13 J0B 34 
J0B H14 H14 H 0 1 N N N N N N -26.770 13.971 -6.630 3.947  -2.332 -1.317 H14 J0B 35 
J0B H15 H15 H 0 1 N N N N N N -26.933 12.524 -7.682 5.379  -1.282 -1.473 H15 J0B 36 
J0B H16 H16 H 0 1 N N N N N N -25.223 10.780 -7.600 2.529  0.089  1.288  H16 J0B 37 
J0B H17 H17 H 0 1 N N N N N N -23.772 11.018 -6.569 2.090  -1.439 0.482  H17 J0B 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J0B I   C4  SING N N 1  
J0B N3  C4  DOUB Y N 2  
J0B N3  N2  SING Y N 3  
J0B C8  N5  SING N N 4  
J0B C8  C7  SING N N 5  
J0B C9  N5  SING N N 6  
J0B C9  C5  SING N N 7  
J0B C4  C2  SING Y N 8  
J0B C12 C11 SING N N 9  
J0B N5  C10 SING N N 10 
J0B C11 C10 SING N N 11 
J0B C10 O   DOUB N N 12 
J0B C6  C7  SING N N 13 
J0B C6  C5  SING N N 14 
J0B N2  C5  SING N N 15 
J0B N2  C1  SING Y N 16 
J0B C2  C1  DOUB Y N 17 
J0B C2  C3  SING Y N 18 
J0B N4  C3  SING N N 19 
J0B C1  N1  SING Y N 20 
J0B C3  N   DOUB Y N 21 
J0B N1  C   DOUB Y N 22 
J0B N   C   SING Y N 23 
J0B C12 H1  SING N N 24 
J0B C12 H2  SING N N 25 
J0B C12 H3  SING N N 26 
J0B C5  H4  SING N N 27 
J0B N4  H5  SING N N 28 
J0B N4  H6  SING N N 29 
J0B C6  H7  SING N N 30 
J0B C6  H8  SING N N 31 
J0B C11 H9  SING N N 32 
J0B C11 H10 SING N N 33 
J0B C   H11 SING N N 34 
J0B C7  H12 SING N N 35 
J0B C7  H13 SING N N 36 
J0B C8  H14 SING N N 37 
J0B C8  H15 SING N N 38 
J0B C9  H16 SING N N 39 
J0B C9  H17 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J0B InChI            InChI                1.03  "InChI=1S/C13H17IN6O/c1-2-9(21)19-5-3-4-8(6-19)20-13-10(11(14)18-20)12(15)16-7-17-13/h7-8H,2-6H2,1H3,(H2,15,16,17)/t8-/m1/s1" 
J0B InChIKey         InChI                1.03  CBMKHVATJGHRQV-MRVPVSSYSA-N                                                                                                   
J0B SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N1CCC[C@H](C1)n2nc(I)c3c(N)ncnc23"                                                                                    
J0B SMILES           CACTVS               3.385 "CCC(=O)N1CCC[CH](C1)n2nc(I)c3c(N)ncnc23"                                                                                     
J0B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCC[C@H](C1)n2c3c(c(ncn3)N)c(n2)I"                                                                                  
J0B SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCCC(C1)n2c3c(c(ncn3)N)c(n2)I"                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           J0B 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "1-[(3~{R})-3-(4-azanyl-3-iodanyl-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J0B "Create component" 2019-01-10 EBI  
J0B "Initial release"  2019-05-22 RCSB 
J0B "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            J0B 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
