data_HXB
# 
_chem_comp.id                                    HXB 
_chem_comp.name                                  
;4'-methylthymidine 5'-(tetrahydrogen triphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H19 N2 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-03-31 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        496.195 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HXB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3M8S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HXB C1     C1   C 0 1 N N N 19.176 -21.323 -11.689 1.652  2.455  2.009  C1   HXB 1  
HXB N1     N1   N 0 1 N N N 19.154 -19.283 -7.341  4.651  -0.480 0.368  N1   HXB 2  
HXB O1     O1   O 0 1 N N N 18.153 -15.942 -11.227 -2.539 0.462  -0.101 O1   HXB 3  
HXB P1     P1   P 0 1 N N N 19.654 -16.305 -11.492 -1.520 1.493  -0.802 P1   HXB 4  
HXB C2     C2   C 0 1 N N N 18.820 -19.731 -5.986  4.431  -0.893 -0.893 C2   HXB 5  
HXB O2     O2   O 0 1 N N N 18.413 -20.883 -5.801  3.702  -0.243 -1.618 O2   HXB 6  
HXB P2     P2   P 0 1 N N N 16.999 -16.262 -12.226 -3.851 -0.326 -0.599 P2   HXB 7  
HXB N3     N3   N 0 1 N N N 19.001 -18.828 -4.893  5.007  -2.015 -1.364 N3   HXB 8  
HXB O3     O3   O 0 1 N N N 16.383 -14.914 -12.758 -4.718 -0.786 0.678  O3   HXB 9  
HXB P3     P3   P 0 1 N N N 17.136 -13.958 -13.749 -6.225 -1.315 0.874  P3   HXB 10 
HXB C4     C4   C 0 1 N N N 19.478 -17.550 -5.115  5.818  -2.746 -0.574 C4   HXB 11 
HXB O4     O4   O 0 1 N N N 19.623 -16.790 -4.163  6.339  -3.761 -0.999 O4   HXB 12 
HXB C5     C5   C 0 1 N N N 19.798 -17.108 -6.461  6.058  -2.323 0.756  C5   HXB 13 
HXB O5     O5   O 0 1 N N N 16.123 -13.421 -14.728 -7.136 -0.547 -0.004 O5   HXB 14 
HXB C6     C6   C 0 1 N N N 19.618 -18.021 -7.571  5.468  -1.194 1.203  C6   HXB 15 
HXB O6     O6   O 0 1 N N N 18.279 -14.706 -14.510 -6.300 -2.877 0.491  O6   HXB 16 
HXB O7     O7   O 0 1 N N N 17.753 -12.770 -12.969 -6.668 -1.117 2.409  O7   HXB 17 
HXB O8     O8   O 0 1 N N N 15.924 -17.007 -11.463 -3.410 -1.623 -1.444 O8   HXB 18 
HXB O9     O9   O 0 1 N N N 17.496 -17.127 -13.427 -4.667 0.565  -1.454 O9   HXB 19 
HXB "C1'"  C1*  C 0 1 N N R 18.929 -20.189 -8.464  4.016  0.748  0.851  C1*  HXB 20 
HXB O10    O10  O 0 1 N N N 19.976 -16.271 -12.973 -1.253 1.055  -2.191 O10  HXB 21 
HXB O11    O11  O 0 1 N N N 20.549 -15.256 -10.736 -2.172 2.965  -0.819 O11  HXB 22 
HXB "C2'"  C2*  C 0 1 N N N 17.568 -20.368 -9.136  4.508  1.973  0.039  C2*  HXB 23 
HXB "C3'"  C3*  C 0 1 N N S 17.742 -19.721 -10.444 3.339  2.972  0.217  C3*  HXB 24 
HXB "O3'"  O3*  O 0 1 N N N 16.716 -19.847 -11.374 3.632  3.905  1.259  O3*  HXB 25 
HXB "C4'"  C4*  C 0 1 N N R 19.170 -20.085 -10.853 2.140  2.085  0.607  C4*  HXB 26 
HXB "O4'"  O4*  O 0 1 N N N 19.902 -20.356 -9.594  2.595  0.719  0.596  O4*  HXB 27 
HXB "C5'"  C5*  C 0 1 N N N 19.792 -18.929 -11.609 1.006  2.269  -0.404 C5*  HXB 28 
HXB "O5'"  O5*  O 0 1 N N N 19.956 -17.735 -10.894 -0.138 1.528  0.024  O5*  HXB 29 
HXB C5M    C5M  C 0 1 N N N 20.311 -15.716 -6.706  6.960  -3.123 1.661  C5M  HXB 30 
HXB H1     H1   H 0 1 N N N 20.210 -21.569 -11.973 1.345  3.501  2.022  H1   HXB 31 
HXB H1A    H1A  H 0 1 N N N 18.746 -22.156 -11.113 0.805  1.824  2.277  H1A  HXB 32 
HXB H1B    H1B  H 0 1 N N N 18.576 -21.156 -12.596 2.459  2.305  2.726  H1B  HXB 33 
HXB HN3    HN3  H 0 1 N N N 18.781 -19.122 -3.963  4.837  -2.299 -2.276 HN3  HXB 34 
HXB H6     H6   H 0 1 N N N 19.850 -17.704 -8.577  5.639  -0.856 2.214  H6   HXB 35 
HXB HO6    HO6  H 0 1 N N N 18.111 -14.676 -15.444 -5.728 -3.441 1.028  HO6  HXB 36 
HXB HO7    HO7  H 0 1 N N N 17.365 -11.957 -13.270 -7.568 -1.415 2.601  HO7  HXB 37 
HXB HO8    HO8  H 0 1 N N N 15.771 -17.851 -11.872 -2.871 -2.253 -0.946 HO8  HXB 38 
HXB "H1'"  H1*  H 0 1 N N N 19.095 -20.927 -7.666  4.212  0.888  1.914  H1*  HXB 39 
HXB HO11   HO11 H 0 0 N N N 21.112 -14.812 -11.359 -2.374 3.316  0.059  HO11 HXB 40 
HXB "H2'"  H2*  H 0 1 N N N 17.308 -21.431 -9.244  5.430  2.374  0.460  H2*  HXB 41 
HXB "H2'A" H2*A H 0 0 N N N 16.765 -19.891 -8.554  4.642  1.714  -1.012 H2*A HXB 42 
HXB "H3'"  H3*  H 0 1 N N N 17.632 -18.628 -10.378 3.138  3.495  -0.717 H3*  HXB 43 
HXB "HO3'" HO3* H 0 0 N N N 16.952 -19.387 -12.171 4.413  4.450  1.090  HO3* HXB 44 
HXB "H5'"  H5*  H 0 1 N N N 20.791 -19.253 -11.936 0.750  3.326  -0.473 H5*  HXB 45 
HXB "H5'A" H5*A H 0 0 N N N 19.137 -18.709 -12.465 1.328  1.908  -1.381 H5*A HXB 46 
HXB H5M    H5M  H 0 1 N N N 20.493 -15.576 -7.782  7.336  -3.992 1.122  H5M  HXB 47 
HXB H5MA   H5MA H 0 0 N N N 19.565 -14.985 -6.362  7.797  -2.502 1.980  H5MA HXB 48 
HXB H5MB   H5MB H 0 0 N N N 21.251 -15.569 -6.153  6.398  -3.453 2.535  H5MB HXB 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HXB C1    "C4'"  SING N N 1  
HXB C1    H1     SING N N 2  
HXB C1    H1A    SING N N 3  
HXB C1    H1B    SING N N 4  
HXB "C1'" N1     SING N N 5  
HXB C6    N1     SING N N 6  
HXB N1    C2     SING N N 7  
HXB P2    O1     SING N N 8  
HXB P1    O1     SING N N 9  
HXB O10   P1     DOUB N N 10 
HXB P1    "O5'"  SING N N 11 
HXB P1    O11    SING N N 12 
HXB C2    O2     DOUB N N 13 
HXB C2    N3     SING N N 14 
HXB O9    P2     DOUB N N 15 
HXB O3    P2     SING N N 16 
HXB P2    O8     SING N N 17 
HXB C4    N3     SING N N 18 
HXB N3    HN3    SING N N 19 
HXB P3    O3     SING N N 20 
HXB O5    P3     DOUB N N 21 
HXB O6    P3     SING N N 22 
HXB P3    O7     SING N N 23 
HXB C5    C4     SING N N 24 
HXB C4    O4     DOUB N N 25 
HXB C6    C5     DOUB N N 26 
HXB C5M   C5     SING N N 27 
HXB C6    H6     SING N N 28 
HXB O6    HO6    SING N N 29 
HXB O7    HO7    SING N N 30 
HXB O8    HO8    SING N N 31 
HXB "O4'" "C1'"  SING N N 32 
HXB "C2'" "C1'"  SING N N 33 
HXB "C1'" "H1'"  SING N N 34 
HXB O11   HO11   SING N N 35 
HXB "C3'" "C2'"  SING N N 36 
HXB "C2'" "H2'"  SING N N 37 
HXB "C2'" "H2'A" SING N N 38 
HXB "O3'" "C3'"  SING N N 39 
HXB "C4'" "C3'"  SING N N 40 
HXB "C3'" "H3'"  SING N N 41 
HXB "O3'" "HO3'" SING N N 42 
HXB "C5'" "C4'"  SING N N 43 
HXB "C4'" "O4'"  SING N N 44 
HXB "C5'" "O5'"  SING N N 45 
HXB "C5'" "H5'"  SING N N 46 
HXB "C5'" "H5'A" SING N N 47 
HXB C5M   H5M    SING N N 48 
HXB C5M   H5MA   SING N N 49 
HXB C5M   H5MB   SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HXB SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2(OC(N1C(=O)NC(=O)C(=C1)C)CC2O)C"                                                                                                                                   
HXB SMILES_CANONICAL CACTVS               3.370 "CC1=CN([C@H]2C[C@H](O)[C@@](C)(CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                                 
HXB SMILES           CACTVS               3.370 "CC1=CN([CH]2C[CH](O)[C](C)(CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                                     
HXB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@@](O2)(C)CO[P@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O"                                                                                                               
HXB SMILES           "OpenEye OEToolkits" 1.7.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)(C)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                                   
HXB InChI            InChI                1.03  "InChI=1S/C11H19N2O14P3/c1-6-4-13(10(16)12-9(6)15)8-3-7(14)11(2,25-8)5-24-29(20,21)27-30(22,23)26-28(17,18)19/h4,7-8,14H,3,5H2,1-2H3,(H,20,21)(H,22,23)(H,12,15,16)(H2,17,18,19)/t7-,8+,11+/m0/s1" 
HXB InChIKey         InChI                1.03  IUVOCYKHODEDJI-VAOFZXAKSA-N                                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HXB "SYSTEMATIC NAME" ACDLabs              12.01 
;4'-methylthymidine 5'-(tetrahydrogen triphosphate)
;
HXB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[hydroxy-[[(2R,3S,5R)-3-hydroxy-2-methyl-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HXB "Create component"  2010-03-31 RCSB 
HXB "Modify descriptor" 2011-06-04 RCSB 
# 
