data_A1BJB
# 
_chem_comp.id                                    A1BJB 
_chem_comp.name                                  "(3R)-3-({(2R)-2-(4-carboxyphenyl)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]acetyl}amino)-2-hydroxy-3,4-dihydro-2H-1,2-benzoxaborinine-8-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H25 B N4 O10" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-12-06 
_chem_comp.pdbx_modified_date                    2025-01-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        552.298 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1BJB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9MD0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1BJB C10 C1  C 0 1 N N N N N N -9.237  -6.033 -21.478 -3.769 0.760  0.422  C10 A1BJB 1  
A1BJB N12 N1  N 0 1 N N N N N N -11.094 -4.576 -21.616 -1.538 0.218  -0.447 N12 A1BJB 2  
A1BJB C13 C2  C 0 1 N N N N N N -12.137 -5.402 -22.164 -0.334 -0.196 -0.006 C13 A1BJB 3  
A1BJB C15 C3  C 0 1 N N R N N N -13.129 -4.786 -23.134 0.925  0.393  -0.588 C15 A1BJB 4  
A1BJB C17 C4  C 0 1 N N N N N N -15.546 -4.737 -22.582 3.273  -0.258 -0.595 C17 A1BJB 5  
A1BJB C20 C5  C 0 1 N N N N N N -18.122 -4.726 -21.930 4.203  -1.484 1.291  C20 A1BJB 6  
A1BJB C21 C6  C 0 1 N N N N N N -19.171 -5.549 -21.896 4.940  -2.818 1.369  C21 A1BJB 7  
A1BJB C24 C7  C 0 1 N N N N N N -21.473 -6.997 -20.478 7.570  -4.773 0.851  C24 A1BJB 8  
A1BJB O01 O1  O 0 1 N N N N N N -9.724  -2.624 -20.285 -2.847 -1.594 -2.189 O01 A1BJB 9  
A1BJB B02 B1  B 0 1 N N N N N N -9.183  -3.867 -20.035 -3.445 -1.316 -0.932 B02 A1BJB 10 
A1BJB O03 O2  O 0 1 N N N N N N -7.845  -3.897 -20.337 -4.690 -1.889 -0.551 O03 A1BJB 11 
A1BJB C04 C8  C 0 1 Y N N N N N -7.615  -4.125 -21.742 -5.529 -1.048 0.106  C04 A1BJB 12 
A1BJB C05 C9  C 0 1 Y N N N N N -6.765  -3.307 -22.446 -6.856 -1.489 0.284  C05 A1BJB 13 
A1BJB C06 C10 C 0 1 Y N N N N N -6.559  -3.499 -23.823 -7.775 -0.689 0.961  C06 A1BJB 14 
A1BJB C07 C11 C 0 1 Y N N N N N -7.257  -4.536 -24.476 -7.379 0.534  1.456  C07 A1BJB 15 
A1BJB C08 C12 C 0 1 Y N N N N N -8.141  -5.365 -23.769 -6.079 0.966  1.275  C08 A1BJB 16 
A1BJB C09 C13 C 0 1 Y N N N N N -8.307  -5.168 -22.386 -5.152 0.185  0.596  C09 A1BJB 17 
A1BJB C11 C14 C 0 1 N N R N N N -10.053 -5.075 -20.656 -2.762 -0.354 0.120  C11 A1BJB 18 
A1BJB O14 O3  O 0 1 N N N N N N -12.263 -6.517 -21.828 -0.264 -1.043 0.860  O14 A1BJB 19 
A1BJB N16 N2  N 0 1 N N N N N N -14.347 -5.476 -22.800 2.092  -0.219 0.053  N16 A1BJB 20 
A1BJB O18 O4  O 0 1 N N N N N N -15.565 -3.560 -22.750 3.395  0.295  -1.670 O18 A1BJB 21 
A1BJB N19 N3  N 0 1 N N N N N N -16.730 -5.468 -22.190 4.319  -0.910 -0.050 N19 A1BJB 22 
A1BJB N22 N4  N 0 1 N N N N N N -19.059 -6.827 -20.936 6.310  -2.677 0.874  N22 A1BJB 23 
A1BJB C23 C15 C 0 1 N N N N N N -20.077 -7.351 -20.046 7.400  -3.409 1.523  C23 A1BJB 24 
A1BJB C25 C16 C 0 1 N N N N N N -17.874 -7.387 -21.054 6.571  -1.875 -0.178 C25 A1BJB 25 
A1BJB O26 O5  O 0 1 N N N N N N -17.622 -8.363 -20.408 7.683  -1.837 -0.661 O26 A1BJB 26 
A1BJB C27 C17 C 0 1 N N N N N N -16.781 -6.772 -21.984 5.470  -1.033 -0.742 C27 A1BJB 27 
A1BJB O28 O6  O 0 1 N N N N N N -15.937 -7.453 -22.440 5.610  -0.469 -1.806 O28 A1BJB 28 
A1BJB C29 C18 C 0 1 Y N N N N N -12.642 -4.878 -24.568 0.942  1.880  -0.349 C29 A1BJB 29 
A1BJB C30 C19 C 0 1 Y N N N N N -11.932 -3.807 -25.016 0.577  2.746  -1.365 C30 A1BJB 30 
A1BJB C31 C20 C 0 1 Y N N N N N -11.445 -3.784 -26.283 0.590  4.109  -1.152 C31 A1BJB 31 
A1BJB C32 C21 C 0 1 Y N N N N N -11.682 -4.838 -27.118 0.973  4.614  0.092  C32 A1BJB 32 
A1BJB C33 C22 C 0 1 Y N N N N N -12.409 -5.933 -26.695 1.339  3.735  1.113  C33 A1BJB 33 
A1BJB C34 C23 C 0 1 Y N N N N N -12.896 -5.944 -25.402 1.316  2.374  0.888  C34 A1BJB 34 
A1BJB C35 C24 C 0 1 N N N N N N -11.123 -4.736 -28.509 0.995  6.073  0.325  C35 A1BJB 35 
A1BJB O36 O7  O 0 1 N N N N N N -10.142 -5.443 -28.777 0.640  6.918  -0.663 O36 A1BJB 36 
A1BJB O37 O8  O 0 1 N N N N N N -11.623 -3.941 -29.340 1.333  6.510  1.406  O37 A1BJB 37 
A1BJB C38 C25 C 0 1 N N N N N N -6.084  -2.217 -21.654 -7.272 -2.800 -0.247 C38 A1BJB 38 
A1BJB O39 O9  O 0 1 N N N N N N -6.027  -1.073 -22.136 -6.472 -3.498 -0.838 O39 A1BJB 39 
A1BJB O40 O10 O 0 1 N N N N N N -5.587  -2.489 -20.531 -8.540 -3.223 -0.078 O40 A1BJB 40 
A1BJB H1  H1  H 0 1 N N N N N N -9.897  -6.658 -22.098 -3.776 1.473  -0.402 H1  A1BJB 41 
A1BJB H2  H2  H 0 1 N N N N N N -8.633  -6.677 -20.821 -3.476 1.271  1.339  H2  A1BJB 42 
A1BJB H3  H3  H 0 1 N N N N N N -11.061 -3.615 -21.890 -1.595 0.895  -1.139 H3  A1BJB 43 
A1BJB H4  H4  H 0 1 N N N N N N -13.238 -3.722 -22.879 0.955  0.197  -1.660 H4  A1BJB 44 
A1BJB H5  H5  H 0 1 N N N N N N -18.061 -4.202 -20.965 3.150  -1.641 1.525  H5  A1BJB 45 
A1BJB H6  H6  H 0 1 N N N N N N -18.281 -3.994 -22.736 4.633  -0.793 2.016  H6  A1BJB 46 
A1BJB H7  H7  H 0 1 N N N N N N -20.043 -4.963 -21.569 4.965  -3.155 2.405  H7  A1BJB 47 
A1BJB H8  H8  H 0 1 N N N N N N -19.339 -5.916 -22.919 4.413  -3.556 0.764  H8  A1BJB 48 
A1BJB H9  H9  H 0 1 N N N N N N -22.196 -7.421 -19.766 8.381  -5.317 1.334  H9  A1BJB 49 
A1BJB H10 H10 H 0 1 N N N N N N -21.582 -5.903 -20.504 6.644  -5.341 0.944  H10 A1BJB 50 
A1BJB H11 H11 H 0 1 N N N N N N -21.662 -7.408 -21.481 7.804  -4.631 -0.204 H11 A1BJB 51 
A1BJB H12 H12 H 0 1 N N N N N N -9.048  -2.045 -20.617 -3.361 -2.197 -2.744 H12 A1BJB 52 
A1BJB H13 H13 H 0 1 N N N N N N -5.879  -2.864 -24.371 -8.792 -1.027 1.097  H13 A1BJB 53 
A1BJB H14 H14 H 0 1 N N N N N N -7.109  -4.694 -25.534 -8.086 1.156  1.985  H14 A1BJB 54 
A1BJB H15 H15 H 0 1 N N N N N N -8.687  -6.144 -24.280 -5.779 1.926  1.667  H15 A1BJB 55 
A1BJB H16 H16 H 0 1 N N N N N N -10.537 -5.614 -19.829 -2.529 -0.902 1.032  H16 A1BJB 56 
A1BJB H17 H17 H 0 1 N N N N N N -14.352 -6.473 -22.721 2.014  -0.595 0.944  H17 A1BJB 57 
A1BJB H18 H18 H 0 1 N N N N N N -19.986 -8.447 -20.016 7.166  -3.550 2.578  H18 A1BJB 58 
A1BJB H19 H19 H 0 1 N N N N N N -19.907 -6.942 -19.039 8.326  -2.840 1.429  H19 A1BJB 59 
A1BJB H20 H20 H 0 1 N N N N N N -11.755 -2.969 -24.358 0.282  2.353  -2.327 H20 A1BJB 60 
A1BJB H21 H21 H 0 1 N N N N N N -10.873 -2.936 -26.629 0.306  4.783  -1.947 H21 A1BJB 61 
A1BJB H22 H22 H 0 1 N N N N N N -12.593 -6.763 -27.361 1.636  4.120  2.077  H22 A1BJB 62 
A1BJB H23 H23 H 0 1 N N N N N N -13.473 -6.785 -25.047 1.600  1.693  1.677  H23 A1BJB 63 
A1BJB H24 H24 H 0 1 N N N N N N -9.865  -5.276 -29.670 0.671  7.864  -0.463 H24 A1BJB 64 
A1BJB H25 H25 H 0 1 N N N N N N -5.194  -1.708 -20.161 -8.766 -4.089 -0.443 H25 A1BJB 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1BJB O37 C35 DOUB N N 1  
A1BJB O36 C35 SING N N 2  
A1BJB C35 C32 SING N N 3  
A1BJB C32 C33 DOUB Y N 4  
A1BJB C32 C31 SING Y N 5  
A1BJB C33 C34 SING Y N 6  
A1BJB C31 C30 DOUB Y N 7  
A1BJB C34 C29 DOUB Y N 8  
A1BJB C30 C29 SING Y N 9  
A1BJB C29 C15 SING N N 10 
A1BJB C07 C06 DOUB Y N 11 
A1BJB C07 C08 SING Y N 12 
A1BJB C06 C05 SING Y N 13 
A1BJB C08 C09 DOUB Y N 14 
A1BJB C15 N16 SING N N 15 
A1BJB C15 C13 SING N N 16 
A1BJB N16 C17 SING N N 17 
A1BJB O18 C17 DOUB N N 18 
A1BJB C17 N19 SING N N 19 
A1BJB C05 C04 DOUB Y N 20 
A1BJB C05 C38 SING N N 21 
A1BJB O28 C27 DOUB N N 22 
A1BJB C09 C04 SING Y N 23 
A1BJB C09 C10 SING N N 24 
A1BJB N19 C27 SING N N 25 
A1BJB N19 C20 SING N N 26 
A1BJB C13 O14 DOUB N N 27 
A1BJB C13 N12 SING N N 28 
A1BJB O39 C38 DOUB N N 29 
A1BJB C27 C25 SING N N 30 
A1BJB C20 C21 SING N N 31 
A1BJB C21 N22 SING N N 32 
A1BJB C04 O03 SING N N 33 
A1BJB C38 O40 SING N N 34 
A1BJB N12 C11 SING N N 35 
A1BJB C10 C11 SING N N 36 
A1BJB C25 N22 SING N N 37 
A1BJB C25 O26 DOUB N N 38 
A1BJB N22 C23 SING N N 39 
A1BJB C11 B02 SING N N 40 
A1BJB C24 C23 SING N N 41 
A1BJB O03 B02 SING N N 42 
A1BJB O01 B02 SING N N 43 
A1BJB C10 H1  SING N N 44 
A1BJB C10 H2  SING N N 45 
A1BJB N12 H3  SING N N 46 
A1BJB C15 H4  SING N N 47 
A1BJB C20 H5  SING N N 48 
A1BJB C20 H6  SING N N 49 
A1BJB C21 H7  SING N N 50 
A1BJB C21 H8  SING N N 51 
A1BJB C24 H9  SING N N 52 
A1BJB C24 H10 SING N N 53 
A1BJB C24 H11 SING N N 54 
A1BJB O01 H12 SING N N 55 
A1BJB C06 H13 SING N N 56 
A1BJB C07 H14 SING N N 57 
A1BJB C08 H15 SING N N 58 
A1BJB C11 H16 SING N N 59 
A1BJB N16 H17 SING N N 60 
A1BJB C23 H18 SING N N 61 
A1BJB C23 H19 SING N N 62 
A1BJB C30 H20 SING N N 63 
A1BJB C31 H21 SING N N 64 
A1BJB C33 H22 SING N N 65 
A1BJB C34 H23 SING N N 66 
A1BJB O36 H24 SING N N 67 
A1BJB O40 H25 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1BJB SMILES           ACDLabs              14.52   "O=C(O)c1ccc(cc1)C(NC(=O)N1CCN(CC)C(=O)C1=O)C(=O)NC1Cc2cccc(c2OB1O)C(=O)O"                                                                                                                                                           
A1BJB InChI            InChI                1.06    "InChI=1S/C25H25BN4O10/c1-2-29-10-11-30(22(33)21(29)32)25(38)28-18(13-6-8-14(9-7-13)23(34)35)20(31)27-17-12-15-4-3-5-16(24(36)37)19(15)40-26(17)39/h3-9,17-18,39H,2,10-12H2,1H3,(H,27,31)(H,28,38)(H,34,35)(H,36,37)/t17-,18+/m0/s1" 
A1BJB InChIKey         InChI                1.06    HROYTATZRUUQQB-ZWKOTPCHSA-N                                                                                                                                                                                                          
A1BJB SMILES_CANONICAL CACTVS               3.385   "CCN1CCN(C(=O)N[C@@H](C(=O)N[C@H]2Cc3cccc(C(O)=O)c3OB2O)c4ccc(cc4)C(O)=O)C(=O)C1=O"                                                                                                                                                  
A1BJB SMILES           CACTVS               3.385   "CCN1CCN(C(=O)N[CH](C(=O)N[CH]2Cc3cccc(C(O)=O)c3OB2O)c4ccc(cc4)C(O)=O)C(=O)C1=O"                                                                                                                                                     
A1BJB SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "B1([C@H](Cc2cccc(c2O1)C(=O)O)NC(=O)[C@@H](c3ccc(cc3)C(=O)O)NC(=O)N4CCN(C(=O)C4=O)CC)O"                                                                                                                                              
A1BJB SMILES           "OpenEye OEToolkits" 3.1.0.0 "B1(C(Cc2cccc(c2O1)C(=O)O)NC(=O)C(c3ccc(cc3)C(=O)O)NC(=O)N4CCN(C(=O)C4=O)CC)O"                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1BJB "SYSTEMATIC NAME" ACDLabs              14.52   "(3R)-3-({(2R)-2-(4-carboxyphenyl)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]acetyl}amino)-2-hydroxy-3,4-dihydro-2H-1,2-benzoxaborinine-8-carboxylic acid"                     
A1BJB "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-3-[[(2~{R})-2-(4-carboxyphenyl)-2-[[4-ethyl-2,3-bis(oxidanylidene)piperazin-1-yl]carbonylamino]ethanoyl]amino]-2-oxidanyl-3,4-dihydro-1,2-benzoxaborinine-8-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1BJB "Create component" 2024-12-06 RCSB 
A1BJB "Initial release"  2025-01-22 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1BJB 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B02 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
