data_A1ADB
# 
_chem_comp.id                                    A1ADB 
_chem_comp.name                                  "N-{3-[(2-amino-6-methylpyrimidin-4-yl)amino]-5-[(4-methylpiperazin-1-yl)methyl]phenyl}-3-[(quinolin-4-yl)amino]benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H35 N9 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-19 
_chem_comp.pdbx_modified_date                    2024-09-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        573.691 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ADB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8VPI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ADB C2   C1  C 0 1 N N N N N N -37.369 -22.600 -2.674 -1.261  1.424  -0.345 C2   A1ADB 1  
A1ADB C3   C2  C 0 1 Y N N N N N -35.940 -22.938 -2.386 -2.507  2.212  -0.231 C3   A1ADB 2  
A1ADB O1   O1  O 0 1 N N N N N N -37.636 -21.785 -3.553 -1.316  0.225  -0.532 O1   A1ADB 3  
A1ADB C4   C3  C 0 1 Y N N N N N -35.352 -24.184 -2.591 -2.448  3.591  -0.022 C4   A1ADB 4  
A1ADB C5   C4  C 0 1 Y N N N N N -33.993 -24.359 -2.393 -3.612  4.324  0.084  C5   A1ADB 5  
A1ADB C6   C5  C 0 1 Y N N N N N -33.203 -23.295 -1.989 -4.840  3.697  -0.015 C6   A1ADB 6  
A1ADB C7   C6  C 0 1 Y N N N N N -33.779 -22.046 -1.780 -4.911  2.324  -0.223 C7   A1ADB 7  
A1ADB C9   C7  C 0 1 Y N N N N N -32.500 -20.765 -0.086 -6.343  0.439  0.236  C9   A1ADB 8  
A1ADB C10  C8  C 0 1 Y N N N N N -32.369 -19.447 0.444  -7.527  -0.298 -0.007 C10  A1ADB 9  
A1ADB C11  C9  C 0 1 Y N N N N N -32.813 -18.281 -0.229 -8.552  0.214  -0.815 C11  A1ADB 10 
A1ADB C12  C10 C 0 1 Y N N N N N -32.708 -17.052 0.353  -9.676  -0.527 -1.026 C12  A1ADB 11 
A1ADB C13  C11 C 0 1 Y N N N N N -32.161 -16.916 1.620  -9.820  -1.786 -0.450 C13  A1ADB 12 
A1ADB C14  C12 C 0 1 Y N N N N N -31.715 -18.012 2.308  -8.843  -2.312 0.340  C14  A1ADB 13 
A1ADB C15  C13 C 0 1 Y N N N N N -31.808 -19.302 1.739  -7.670  -1.578 0.580  C15  A1ADB 14 
A1ADB C17  C14 C 0 1 Y N N N N N -31.537 -21.576 1.942  -5.592  -1.398 1.584  C17  A1ADB 15 
A1ADB C18  C15 C 0 1 Y N N N N N -32.073 -21.820 0.689  -5.376  -0.136 1.045  C18  A1ADB 16 
A1ADB C19  C16 C 0 1 Y N N N N N -35.144 -21.872 -1.978 -3.747  1.580  -0.337 C19  A1ADB 17 
A1ADB C21  C17 C 0 1 Y N N N N N -38.338 -24.132 -0.858 1.110   1.280  -0.222 C21  A1ADB 18 
A1ADB C22  C18 C 0 1 Y N N N N N -37.367 -25.084 -0.563 2.282   1.795  -0.761 C22  A1ADB 19 
A1ADB C23  C19 C 0 1 Y N N N N N -37.565 -26.005 0.456  3.444   1.049  -0.732 C23  A1ADB 20 
A1ADB C24  C20 C 0 1 N N N N N N -36.517 -27.029 0.780  4.714   1.611  -1.318 C24  A1ADB 21 
A1ADB C26  C21 C 0 1 N N N N N N -37.240 -29.296 0.027  5.926   1.435  0.771  C26  A1ADB 22 
A1ADB C27  C22 C 0 1 N N N N N N -37.526 -30.689 0.557  6.616   2.246  1.870  C27  A1ADB 23 
A1ADB C29  C23 C 0 1 N N N N N N -35.529 -32.125 0.421  8.769   2.102  0.772  C29  A1ADB 24 
A1ADB C30  C24 C 0 1 N N N N N N -35.524 -30.113 1.840  7.255   3.915  0.238  C30  A1ADB 25 
A1ADB C31  C25 C 0 1 N N N N N N -36.412 -28.988 2.341  6.565   3.104  -0.861 C31  A1ADB 26 
A1ADB C32  C26 C 0 1 Y N N N N N -38.745 -25.972 1.183  3.445   -0.211 -0.167 C32  A1ADB 27 
A1ADB C33  C27 C 0 1 Y N N N N N -39.725 -25.025 0.904  2.276   -0.733 0.375  C33  A1ADB 28 
A1ADB C35  C28 C 0 1 Y N N N N N -41.055 -25.108 3.070  3.015   -3.028 0.363  C35  A1ADB 29 
A1ADB C37  C29 C 0 1 Y N N N N N -42.351 -25.525 4.896  3.851   -5.175 0.423  C37  A1ADB 30 
A1ADB C40  C30 C 0 1 Y N N N N N -40.069 -25.533 5.179  4.337   -3.889 -1.428 C40  A1ADB 31 
A1ADB C41  C31 C 0 1 N N N N N N -38.903 -25.909 6.053  5.004   -3.736 -2.770 C41  A1ADB 32 
A1ADB C42  C32 C 0 1 Y N N N N N -39.901 -25.234 3.843  3.618   -2.844 -0.883 C42  A1ADB 33 
A1ADB C43  C33 C 0 1 Y N N N N N -39.517 -24.107 -0.118 1.107   0.014  0.346  C43  A1ADB 34 
A1ADB N16  N1  N 0 1 Y N N N N N -31.394 -20.378 2.481  -6.694  -2.072 1.351  N16  A1ADB 35 
A1ADB N20  N2  N 0 1 N N N N N N -38.346 -23.207 -1.939 -0.065  2.038  -0.248 N20  A1ADB 36 
A1ADB N25  N3  N 0 1 N N N N N N -37.123 -28.351 1.182  5.449   2.345  -0.280 N25  A1ADB 37 
A1ADB N28  N4  N 0 1 N N N N N N -36.343 -31.231 1.289  7.732   3.005  1.289  N28  A1ADB 38 
A1ADB N34  N5  N 0 1 N N N N N N -40.904 -24.986 1.693  2.278   -2.009 0.946  N34  A1ADB 39 
A1ADB N36  N6  N 0 1 Y N N N N N -42.292 -25.239 3.574  3.153   -4.198 0.980  N36  A1ADB 40 
A1ADB N38  N7  N 0 1 N N N N N N -43.553 -25.748 5.430  3.976   -6.381 1.091  N38  A1ADB 41 
A1ADB N39  N8  N 0 1 Y N N N N N -41.293 -25.668 5.716  4.434   -5.028 -0.758 N39  A1ADB 42 
A1ADB N8   N9  N 0 1 N N N N N N -33.038 -20.936 -1.340 -6.155  1.695  -0.321 N8   A1ADB 43 
A1ADB H4   H1  H 0 1 N N N N N N -35.960 -25.019 -2.906 -1.490  4.084  0.056  H4   A1ADB 44 
A1ADB H5   H2  H 0 1 N N N N N N -33.547 -25.329 -2.554 -3.564  5.390  0.246  H5   A1ADB 45 
A1ADB H6   H3  H 0 1 N N N N N N -32.143 -23.435 -1.837 -5.748  4.276  0.069  H6   A1ADB 46 
A1ADB H11  H4  H 0 1 N N N N N N -33.241 -18.367 -1.217 -8.451  1.189  -1.266 H11  A1ADB 47 
A1ADB H12  H5  H 0 1 N N N N N N -33.054 -16.177 -0.177 -10.466 -0.132 -1.648 H12  A1ADB 48 
A1ADB H13  H6  H 0 1 N N N N N N -32.086 -15.936 2.068  -10.720 -2.355 -0.632 H13  A1ADB 49 
A1ADB H14  H7  H 0 1 N N N N N N -31.289 -17.890 3.293  -8.970  -3.290 0.780  H14  A1ADB 50 
A1ADB H17  H8  H 0 1 N N N N N N -31.212 -22.427 2.522  -4.831  -1.837 2.212  H17  A1ADB 51 
A1ADB H18  H9  H 0 1 N N N N N N -32.156 -22.832 0.321  -4.459  0.394  1.255  H18  A1ADB 52 
A1ADB H19  H10 H 0 1 N N N N N N -35.590 -20.902 -1.814 -3.799  0.513  -0.498 H19  A1ADB 53 
A1ADB H22  H11 H 0 1 N N N N N N -36.450 -25.106 -1.133 2.284   2.780  -1.204 H22  A1ADB 54 
A1ADB H24A H12 H 0 0 N N N N N N -35.885 -27.183 -0.107 5.332   0.796  -1.694 H24A A1ADB 55 
A1ADB H24B H13 H 0 0 N N N N N N -35.899 -26.655 1.610  4.467   2.288  -2.136 H24B A1ADB 56 
A1ADB H26A H14 H 0 0 N N N N N N -38.062 -28.975 -0.630 6.635   0.725  0.343  H26A A1ADB 57 
A1ADB H26B H15 H 0 0 N N N N N N -36.298 -29.303 -0.541 5.080   0.893  1.195  H26B A1ADB 58 
A1ADB H27B H16 H 0 0 N N N N N N -38.385 -30.645 1.243  5.900   2.936  2.316  H27B A1ADB 59 
A1ADB H27A H17 H 0 0 N N N N N N -37.764 -31.354 -0.286 6.996   1.570  2.637  H27A A1ADB 60 
A1ADB H29C H18 H 0 0 N N N N N N -34.668 -32.505 0.990  8.343   1.462  0.000  H29C A1ADB 61 
A1ADB H29B H19 H 0 0 N N N N N N -36.147 -32.970 0.083  9.583   2.690  0.347  H29B A1ADB 62 
A1ADB H29A H20 H 0 0 N N N N N N -35.170 -31.561 -0.452 9.152   1.486  1.585  H29A A1ADB 63 
A1ADB H30A H21 H 0 0 N N N N N N -34.915 -30.490 2.675  8.101   4.456  -0.186 H30A A1ADB 64 
A1ADB H30B H22 H 0 0 N N N N N N -34.864 -29.726 1.050  6.547   4.625  0.665  H30B A1ADB 65 
A1ADB H31A H23 H 0 0 N N N N N N -37.152 -29.393 3.047  6.185   3.780  -1.628 H31A A1ADB 66 
A1ADB H31B H24 H 0 0 N N N N N N -35.794 -28.234 2.851  7.281   2.414  -1.307 H31B A1ADB 67 
A1ADB H32  H25 H 0 1 N N N N N N -38.905 -26.689 1.974  4.356   -0.792 -0.145 H32  A1ADB 68 
A1ADB H41C H26 H 0 0 N N N N N N -39.272 -26.247 7.032  6.016   -3.355 -2.632 H41C A1ADB 69 
A1ADB H41A H27 H 0 0 N N N N N N -38.334 -26.720 5.576  5.046   -4.705 -3.267 H41A A1ADB 70 
A1ADB H41B H28 H 0 0 N N N N N N -38.250 -25.034 6.190  4.433   -3.038 -3.382 H41B A1ADB 71 
A1ADB H42  H29 H 0 1 N N N N N N -38.918 -25.103 3.414  3.523   -1.905 -1.409 H42  A1ADB 72 
A1ADB H43  H30 H 0 1 N N N N N N -40.274 -23.370 -0.340 0.197   -0.389 0.766  H43  A1ADB 73 
A1ADB H20  H31 H 0 1 N N N N N N -39.268 -22.944 -2.222 -0.019  3.006  -0.195 H20  A1ADB 74 
A1ADB H34  H34 H 0 1 N N N N N N -41.753 -24.851 1.182  1.764   -2.180 1.751  H34  A1ADB 75 
A1ADB H38B H35 H 0 0 N N N N N N -44.254 -25.662 4.722  4.484   -7.105 0.694  H38B A1ADB 76 
A1ADB H38A H36 H 0 0 N N N N N N -43.580 -26.670 5.815  3.554   -6.502 1.956  H38A A1ADB 77 
A1ADB H8   H37 H 0 1 N N N N N N -32.888 -20.201 -2.001 -6.887  2.137  -0.780 H8   A1ADB 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ADB O1  C2   DOUB N N 1  
A1ADB C2  C3   SING N N 2  
A1ADB C3  C4   DOUB Y N 3  
A1ADB C4  C5   SING Y N 4  
A1ADB C5  C6   DOUB Y N 5  
A1ADB C6  C7   SING Y N 6  
A1ADB C7  N8   SING N N 7  
A1ADB N8  C9   SING N N 8  
A1ADB C9  C10  SING Y N 9  
A1ADB C10 C11  DOUB Y N 10 
A1ADB C11 C12  SING Y N 11 
A1ADB C12 C13  DOUB Y N 12 
A1ADB C13 C14  SING Y N 13 
A1ADB C10 C15  SING Y N 14 
A1ADB C15 N16  SING Y N 15 
A1ADB N16 C17  DOUB Y N 16 
A1ADB C17 C18  SING Y N 17 
A1ADB C7  C19  DOUB Y N 18 
A1ADB C2  N20  SING N N 19 
A1ADB N20 C21  SING N N 20 
A1ADB C21 C22  DOUB Y N 21 
A1ADB C22 C23  SING Y N 22 
A1ADB C23 C24  SING N N 23 
A1ADB C24 N25  SING N N 24 
A1ADB N25 C26  SING N N 25 
A1ADB C26 C27  SING N N 26 
A1ADB C27 N28  SING N N 27 
A1ADB N28 C29  SING N N 28 
A1ADB N28 C30  SING N N 29 
A1ADB C30 C31  SING N N 30 
A1ADB C23 C32  DOUB Y N 31 
A1ADB C32 C33  SING Y N 32 
A1ADB C33 N34  SING N N 33 
A1ADB N34 C35  SING N N 34 
A1ADB C35 N36  DOUB Y N 35 
A1ADB N36 C37  SING Y N 36 
A1ADB C37 N38  SING N N 37 
A1ADB C37 N39  DOUB Y N 38 
A1ADB N39 C40  SING Y N 39 
A1ADB C40 C41  SING N N 40 
A1ADB C40 C42  DOUB Y N 41 
A1ADB C33 C43  DOUB Y N 42 
A1ADB C19 C3   SING Y N 43 
A1ADB C18 C9   DOUB Y N 44 
A1ADB C15 C14  DOUB Y N 45 
A1ADB C43 C21  SING Y N 46 
A1ADB C31 N25  SING N N 47 
A1ADB C42 C35  SING Y N 48 
A1ADB C4  H4   SING N N 49 
A1ADB C5  H5   SING N N 50 
A1ADB C6  H6   SING N N 51 
A1ADB C11 H11  SING N N 52 
A1ADB C12 H12  SING N N 53 
A1ADB C13 H13  SING N N 54 
A1ADB C14 H14  SING N N 55 
A1ADB C17 H17  SING N N 56 
A1ADB C18 H18  SING N N 57 
A1ADB C19 H19  SING N N 58 
A1ADB C22 H22  SING N N 59 
A1ADB C24 H24A SING N N 60 
A1ADB C24 H24B SING N N 61 
A1ADB C26 H26A SING N N 62 
A1ADB C26 H26B SING N N 63 
A1ADB C27 H27B SING N N 64 
A1ADB C27 H27A SING N N 65 
A1ADB C29 H29C SING N N 66 
A1ADB C29 H29B SING N N 67 
A1ADB C29 H29A SING N N 68 
A1ADB C30 H30A SING N N 69 
A1ADB C30 H30B SING N N 70 
A1ADB C31 H31A SING N N 71 
A1ADB C31 H31B SING N N 72 
A1ADB C32 H32  SING N N 73 
A1ADB C41 H41C SING N N 74 
A1ADB C41 H41A SING N N 75 
A1ADB C41 H41B SING N N 76 
A1ADB C42 H42  SING N N 77 
A1ADB C43 H43  SING N N 78 
A1ADB N20 H20  SING N N 79 
A1ADB N34 H34  SING N N 80 
A1ADB N38 H38B SING N N 81 
A1ADB N38 H38A SING N N 82 
A1ADB N8  H8   SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ADB SMILES           ACDLabs              12.01 "Cc1cc(nc(N)n1)Nc1cc(cc(NC(=O)c2cccc(Nc3ccnc4ccccc43)c2)c1)CN1CCN(C)CC1"                                                                                                                                                         
A1ADB InChI            InChI                1.06  "InChI=1S/C33H35N9O/c1-22-16-31(40-33(34)36-22)38-26-17-23(21-42-14-12-41(2)13-15-42)18-27(20-26)39-32(43)24-6-5-7-25(19-24)37-30-10-11-35-29-9-4-3-8-28(29)30/h3-11,16-20H,12-15,21H2,1-2H3,(H,35,37)(H,39,43)(H3,34,36,38,40)" 
A1ADB InChIKey         InChI                1.06  HSJHGRCPBQHRPX-UHFFFAOYSA-N                                                                                                                                                                                                      
A1ADB SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)Cc2cc(NC(=O)c3cccc(Nc4ccnc5ccccc45)c3)cc(Nc6cc(C)nc(N)n6)c2"                                                                                                                                                         
A1ADB SMILES           CACTVS               3.385 "CN1CCN(CC1)Cc2cc(NC(=O)c3cccc(Nc4ccnc5ccccc45)c3)cc(Nc6cc(C)nc(N)n6)c2"                                                                                                                                                         
A1ADB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N)Nc2cc(cc(c2)NC(=O)c3cccc(c3)Nc4ccnc5c4cccc5)CN6CCN(CC6)C"                                                                                                                                                         
A1ADB SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N)Nc2cc(cc(c2)NC(=O)c3cccc(c3)Nc4ccnc5c4cccc5)CN6CCN(CC6)C"                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1ADB "SYSTEMATIC NAME" ACDLabs              12.01 "N-{3-[(2-amino-6-methylpyrimidin-4-yl)amino]-5-[(4-methylpiperazin-1-yl)methyl]phenyl}-3-[(quinolin-4-yl)amino]benzamide"    
A1ADB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-[(2-azanyl-6-methyl-pyrimidin-4-yl)amino]-5-[(4-methylpiperazin-1-yl)methyl]phenyl]-3-(quinolin-4-ylamino)benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ADB "Create component" 2024-01-19 RCSB 
A1ADB "Initial release"  2024-09-25 RCSB 
# 
