data_A1ACB
# 
_chem_comp.id                                    A1ACB 
_chem_comp.name                                  "5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H11 Cl N4 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-09 
_chem_comp.pdbx_modified_date                    2024-12-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        306.771 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ACB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GXA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ACB C2  C1  C  0 1 Y N N N N N 27.403 -10.430 11.983 3.823  0.112  -0.232 C2  A1ACB 1  
A1ACB N1  N1  N  0 1 N N N N N N 26.361 -10.630 15.523 0.601  1.831  0.069  N1  A1ACB 2  
A1ACB C1  C2  C  0 1 Y N N N N N 25.441 -9.263  12.385 2.126  -1.402 0.153  C1  A1ACB 3  
A1ACB C3  C3  C  0 1 Y N N N N N 27.483 -10.724 13.346 2.903  1.143  -0.197 C3  A1ACB 4  
A1ACB C4  C4  C  0 1 Y N N N N N 26.454 -10.245 14.222 1.559  0.829  0.025  C4  A1ACB 5  
A1ACB C5  C5  C  0 1 Y N N N N N 25.420 -10.207 16.503 -0.755 1.498  0.170  C5  A1ACB 6  
A1ACB N2  N2  N  0 1 N N N N N N 22.238 -9.699  19.213 -4.740 0.306  0.332  N2  A1ACB 7  
A1ACB C6  C6  C  0 1 Y N N N N N 24.770 -8.949  16.541 -1.621 2.313  0.887  C6  A1ACB 8  
A1ACB N3  N3  N  0 1 Y N N N N N 25.421 -9.527  13.700 1.213  -0.443 0.194  N3  A1ACB 9  
A1ACB C7  C7  C  0 1 Y N N N N N 23.729 -8.673  17.441 -2.958 1.987  0.988  C7  A1ACB 10 
A1ACB C8  C8  C  0 1 Y N N N N N 23.303 -9.708  18.286 -3.449 0.838  0.372  C8  A1ACB 11 
A1ACB C9  C9  C  0 1 N N N N N N 22.127 -10.958 19.836 -4.798 -0.834 -0.378 C9  A1ACB 12 
A1ACB O   O1  O  0 1 N N N N N N 21.257 -11.214 20.649 -5.786 -1.508 -0.578 O   A1ACB 13 
A1ACB C10 C10 C  0 1 N N N N N N 23.236 -11.877 19.277 -3.399 -1.117 -0.881 C10 A1ACB 14 
A1ACB C11 C11 C  0 1 Y N N N N N 23.912 -11.004 18.253 -2.574 0.029  -0.343 C11 A1ACB 15 
A1ACB C12 C12 C  0 1 Y N N N N N 24.953 -11.283 17.370 -1.242 0.354  -0.452 C12 A1ACB 16 
A1ACB CL  CL1 CL 0 0 N N N N N N 28.779 -11.578 13.923 3.405  2.789  -0.423 CL  A1ACB 17 
A1ACB N   N4  N  0 1 Y N N N N N 26.377 -9.686  11.476 3.407  -1.134 -0.061 N   A1ACB 18 
A1ACB S   S1  S  0 1 N N N N N N 24.157 -8.261  11.730 1.625  -3.076 0.381  S   A1ACB 19 
A1ACB C   C13 C  0 1 N N N N N N 23.082 -7.812  13.105 3.226  -3.906 0.230  C   A1ACB 20 
A1ACB H1  H1  H  0 1 N N N N N N 28.169 -10.799 11.317 4.869  0.320  -0.401 H1  A1ACB 21 
A1ACB H2  H2  H  0 1 N N N N N N 27.041 -11.296 15.830 0.870  2.762  0.029  H2  A1ACB 22 
A1ACB H3  H3  H  0 1 N N N N N N 21.648 -8.913  19.400 -5.507 0.712  0.766  H3  A1ACB 23 
A1ACB H4  H4  H  0 1 N N N N N N 25.086 -8.177  15.855 -1.247 3.204  1.367  H4  A1ACB 24 
A1ACB H5  H5  H  0 1 N N N N N N 23.271 -7.696  17.481 -3.626 2.625  1.548  H5  A1ACB 25 
A1ACB H6  H6  H  0 1 N N N N N N 22.807 -12.776 18.810 -3.036 -2.066 -0.486 H6  A1ACB 26 
A1ACB H7  H7  H  0 1 N N N N N N 23.939 -12.175 20.069 -3.380 -1.126 -1.971 H7  A1ACB 27 
A1ACB H8  H8  H  0 1 N N N N N N 25.400 -12.265 17.329 -0.574 -0.282 -1.015 H8  A1ACB 28 
A1ACB H9  H9  H  0 1 N N N N N N 22.260 -7.181  12.737 3.902  -3.537 1.002  H9  A1ACB 29 
A1ACB H10 H10 H  0 1 N N N N N N 22.669 -8.724  13.560 3.091  -4.981 0.350  H10 A1ACB 30 
A1ACB H11 H11 H  0 1 N N N N N N 23.662 -7.257  13.857 3.651  -3.701 -0.753 H11 A1ACB 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ACB N   C2  DOUB Y N 1  
A1ACB N   C1  SING Y N 2  
A1ACB S   C1  SING N N 3  
A1ACB S   C   SING N N 4  
A1ACB C2  C3  SING Y N 5  
A1ACB C1  N3  DOUB Y N 6  
A1ACB C3  CL  SING N N 7  
A1ACB C3  C4  DOUB Y N 8  
A1ACB N3  C4  SING Y N 9  
A1ACB C4  N1  SING N N 10 
A1ACB N1  C5  SING N N 11 
A1ACB C5  C6  DOUB Y N 12 
A1ACB C5  C12 SING Y N 13 
A1ACB C6  C7  SING Y N 14 
A1ACB C12 C11 DOUB Y N 15 
A1ACB C7  C8  DOUB Y N 16 
A1ACB C11 C8  SING Y N 17 
A1ACB C11 C10 SING N N 18 
A1ACB C8  N2  SING N N 19 
A1ACB N2  C9  SING N N 20 
A1ACB C10 C9  SING N N 21 
A1ACB C9  O   DOUB N N 22 
A1ACB C2  H1  SING N N 23 
A1ACB N1  H2  SING N N 24 
A1ACB N2  H3  SING N N 25 
A1ACB C6  H4  SING N N 26 
A1ACB C7  H5  SING N N 27 
A1ACB C10 H6  SING N N 28 
A1ACB C10 H7  SING N N 29 
A1ACB C12 H8  SING N N 30 
A1ACB C   H9  SING N N 31 
A1ACB C   H10 SING N N 32 
A1ACB C   H11 SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ACB SMILES           ACDLabs              12.01 "Clc1cnc(SC)nc1Nc1cc2CC(=O)Nc2cc1"                                                                                        
A1ACB InChI            InChI                1.06  "InChI=1S/C13H11ClN4OS/c1-20-13-15-6-9(14)12(18-13)16-8-2-3-10-7(4-8)5-11(19)17-10/h2-4,6H,5H2,1H3,(H,17,19)(H,15,16,18)" 
A1ACB InChIKey         InChI                1.06  WEMZFBNUWFOLKU-UHFFFAOYSA-N                                                                                               
A1ACB SMILES_CANONICAL CACTVS               3.385 "CSc1ncc(Cl)c(Nc2ccc3NC(=O)Cc3c2)n1"                                                                                      
A1ACB SMILES           CACTVS               3.385 "CSc1ncc(Cl)c(Nc2ccc3NC(=O)Cc3c2)n1"                                                                                      
A1ACB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSc1ncc(c(n1)Nc2ccc3c(c2)CC(=O)N3)Cl"                                                                                    
A1ACB SMILES           "OpenEye OEToolkits" 2.0.7 "CSc1ncc(c(n1)Nc2ccc3c(c2)CC(=O)N3)Cl"                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1ACB "SYSTEMATIC NAME" ACDLabs              12.01 "5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one" 
A1ACB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(5-chloranyl-2-methylsulfanyl-pyrimidin-4-yl)amino]-1,3-dihydroindol-2-one"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ACB "Create component" 2024-01-09 RCSB 
A1ACB "Initial release"  2024-12-11 RCSB 
# 
