data_9YB
#

_chem_comp.id                                   9YB
_chem_comp.name                                 "(3~{R})-3-[[1-(2-hydroxyethyl)-5-[(4-methoxynaphthalen-1-yl)methyl]-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-3-yl]carbonylamino]-3-phenyl-propanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H32 N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-08-01
_chem_comp.pdbx_modified_date                   2019-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       528.599
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9YB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5OML
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9YB  C4   C1   C  0  1  Y  N  N  42.575  21.575  29.822  -6.410  -0.415  -1.360  C4   9YB   1  
9YB  C5   C2   C  0  1  Y  N  N  42.795  20.268  29.293  -5.089  -0.375  -1.800  C5   9YB   2  
9YB  C6   C3   C  0  1  Y  N  N  42.915  22.511  27.599  -5.944   1.329   0.220  C6   9YB   3  
9YB  C11  C4   C  0  1  Y  N  N  43.109  21.147  27.131  -4.600   1.362  -0.227  C11  9YB   4  
9YB  C7   C5   C  0  1  Y  N  N  43.019  23.583  26.747  -6.352   2.202   1.241  C7   9YB   5  
9YB  C8   C6   C  0  1  Y  N  N  43.226  23.387  25.431  -5.454   3.067   1.787  C8   9YB   6  
9YB  C9   C7   C  0  1  Y  N  N  43.347  22.123  24.936  -4.132   3.100   1.348  C9   9YB   7  
9YB  C10  C8   C  0  1  Y  N  N  43.306  21.034  25.772  -3.701   2.268   0.360  C10  9YB   8  
9YB  C12  C9   C  0  1  Y  N  N  43.052  20.066  27.982  -4.192   0.491  -1.252  C12  9YB   9  
9YB  C13  C10  C  0  1  N  N  N  43.262  18.646  27.549  -2.768   0.515  -1.744  C13  9YB  10  
9YB  C3   C11  C  0  1  Y  N  N  42.679  22.673  29.020  -6.845   0.419  -0.369  C3   9YB  11  
9YB  C1   C12  C  0  1  N  N  N  42.240  24.277  30.713  -8.991  -0.576  -0.600  C1   9YB  12  
9YB  O2   O1   O  0  1  N  N  N  42.543  23.982  29.345  -8.138   0.371   0.045  O2   9YB  13  
9YB  N14  N1   N  0  1  N  N  N  44.742  18.119  27.653  -1.917  -0.241  -0.815  N14  9YB  14  
9YB  C15  C13  C  0  1  N  N  N  45.171  17.733  28.984  -0.489  -0.043  -1.127  C15  9YB  15  
9YB  C16  C14  C  0  1  Y  N  N  46.579  17.283  29.090   0.316  -0.933  -0.221  C16  9YB  16  
9YB  C17  C15  C  0  1  N  N  N  45.665  18.866  26.901  -2.275  -1.666  -0.813  C17  9YB  17  
9YB  C18  C16  C  0  1  N  N  N  47.158  18.306  26.965  -1.663  -2.355   0.415  C18  9YB  18  
9YB  C19  C17  C  0  1  Y  N  N  47.439  17.576  28.138  -0.206  -1.973   0.479  C19  9YB  19  
9YB  N20  N2   N  0  1  Y  N  N  48.685  17.108  28.584   0.797  -2.527   1.175  N20  9YB  20  
9YB  C21  C18  C  0  1  N  N  N  49.932  17.298  27.764   0.662  -3.681   2.068  C21  9YB  21  
9YB  C22  C19  C  0  1  N  N  N  50.513  15.937  27.463   0.892  -4.969   1.275  C22  9YB  22  
9YB  O23  O2   O  0  1  N  N  N  49.574  15.484  26.451   0.761  -6.094   2.146  O23  9YB  23  
9YB  N24  N3   N  0  1  Y  N  N  48.570  16.575  29.607   1.896  -1.895   0.943  N24  9YB  24  
9YB  C25  C20  C  0  1  Y  N  N  47.268  16.630  30.089   1.683  -0.904   0.095  C25  9YB  25  
9YB  C26  C21  C  0  1  N  N  N  46.823  16.106  31.262   2.687   0.050  -0.419  C26  9YB  26  
9YB  O27  O3   O  0  1  N  N  N  45.676  16.323  31.725   2.354   0.922  -1.199  O27  9YB  27  
9YB  N28  N4   N  0  1  N  N  N  47.682  15.453  32.057   3.972  -0.046  -0.024  N28  9YB  28  
9YB  C29  C22  C  0  1  N  N  R  47.436  14.931  33.395   4.988   0.827  -0.616  C29  9YB  29  
9YB  C30  C23  C  0  1  N  N  N  46.164  14.011  33.611   6.355   0.146  -0.536  C30  9YB  30  
9YB  C37  C24  C  0  1  N  N  N  46.592  12.640  33.078   6.354  -1.087  -1.403  C37  9YB  31  
9YB  O39  O4   O  0  1  N  N  N  46.036  12.251  32.021   5.338  -1.435  -1.957  O39  9YB  32  
9YB  O38  O5   O  0  1  N  N  N  47.541  12.064  33.688   7.482  -1.798  -1.559  O38  9YB  33  
9YB  C31  C25  C  0  1  Y  N  N  47.565  15.944  34.390   5.031   2.131   0.139  C31  9YB  34  
9YB  C32  C26  C  0  1  Y  N  N  47.746  17.299  34.015   4.920   2.136   1.516  C32  9YB  35  
9YB  C33  C27  C  0  1  Y  N  N  48.016  18.192  35.093   4.960   3.332   2.209  C33  9YB  36  
9YB  C34  C28  C  0  1  Y  N  N  47.986  17.791  36.370   5.110   4.523   1.523  C34  9YB  37  
9YB  C35  C29  C  0  1  Y  N  N  47.794  16.448  36.764   5.222   4.518   0.145  C35  9YB  38  
9YB  C36  C30  C  0  1  Y  N  N  47.614  15.535  35.712   5.187   3.321  -0.547  C36  9YB  39  
9YB  H1   H1   H  0  1  N  N  N  42.324  21.695  30.866  -7.100  -1.112  -1.812  H1   9YB  40  
9YB  H2   H2   H  0  1  N  N  N  42.755  19.418  29.958  -4.771  -1.042  -2.587  H2   9YB  41  
9YB  H3   H3   H  0  1  N  N  N  42.934  24.588  27.134  -7.374   2.188   1.591  H3   9YB  42  
9YB  H4   H4   H  0  1  N  N  N  43.296  24.235  24.765  -5.770   3.737   2.572  H4   9YB  43  
9YB  H5   H5   H  0  1  N  N  N  43.477  21.976  23.874  -3.439   3.796   1.797  H5   9YB  44  
9YB  H6   H6   H  0  1  N  N  N  43.433  20.049  25.347  -2.673   2.305   0.030  H6   9YB  45  
9YB  H7   H7   H  0  1  N  N  N  42.945  18.561  26.499  -2.717   0.062  -2.734  H7   9YB  46  
9YB  H8   H8   H  0  1  N  N  N  42.628  18.003  28.177  -2.420   1.547  -1.798  H8   9YB  47  
9YB  H9   H9   H  0  1  N  N  N  42.156  25.366  30.844  -9.033  -0.360  -1.667  H9   9YB  48  
9YB  H10  H10  H  0  1  N  N  N  41.288  23.800  30.989  -8.598  -1.582  -0.448  H10  9YB  49  
9YB  H11  H11  H  0  1  N  N  N  43.043  23.891  31.358  -9.993  -0.510  -0.176  H11  9YB  50  
9YB  H13  H13  H  0  1  N  N  N  45.041  18.600  29.648  -0.300  -0.310  -2.167  H13  9YB  51  
9YB  H14  H14  H  0  1  N  N  N  44.525  16.910  29.324  -0.217   0.998  -0.958  H14  9YB  52  
9YB  H15  H15  H  0  1  N  N  N  45.666  19.898  27.281  -3.360  -1.766  -0.782  H15  9YB  53  
9YB  H16  H16  H  0  1  N  N  N  45.339  18.862  25.850  -1.894  -2.136  -1.720  H16  9YB  54  
9YB  H17  H17  H  0  1  N  N  N  47.319  17.647  26.099  -2.172  -2.019   1.318  H17  9YB  55  
9YB  H18  H18  H  0  1  N  N  N  47.851  19.158  26.912  -1.758  -3.436   0.317  H18  9YB  56  
9YB  H19  H19  H  0  1  N  N  N  50.661  17.897  28.329   1.400  -3.610   2.867  H19  9YB  57  
9YB  H20  H20  H  0  1  N  N  N  49.684  17.813  26.824  -0.339  -3.693   2.498  H20  9YB  58  
9YB  H21  H21  H  0  1  N  N  N  50.506  15.285  28.349   0.154  -5.040   0.476  H21  9YB  59  
9YB  H22  H22  H  0  1  N  N  N  51.537  16.008  27.068   1.893  -4.957   0.845  H22  9YB  60  
9YB  H23  H23  H  0  1  N  N  N  49.819  14.614  26.157   0.894  -6.947   1.710  H23  9YB  61  
9YB  H24  H24  H  0  1  N  N  N  48.600  15.307  31.688   4.224  -0.694   0.653  H24  9YB  62  
9YB  H25  H25  H  0  1  N  N  N  48.277  14.247  33.581   4.738   1.020  -1.660  H25  9YB  63  
9YB  H26  H26  H  0  1  N  N  N  45.303  14.397  33.045   7.125   0.835  -0.885  H26  9YB  64  
9YB  H27  H27  H  0  1  N  N  N  45.904  13.950  34.678   6.561  -0.136   0.496  H27  9YB  65  
9YB  H28  H28  H  0  1  N  N  N  47.783  11.272  33.222   7.431  -2.581  -2.125  H28  9YB  66  
9YB  H29  H29  H  0  1  N  N  N  47.684  17.630  32.989   4.802   1.206   2.052  H29  9YB  67  
9YB  H30  H30  H  0  1  N  N  N  48.252  19.223  34.873   4.872   3.336   3.285  H30  9YB  68  
9YB  H31  H31  H  0  1  N  N  N  48.116  18.535  37.142   5.141   5.457   2.064  H31  9YB  69  
9YB  H32  H32  H  0  1  N  N  N  47.786  16.145  37.801   5.339   5.448  -0.391  H32  9YB  70  
9YB  H33  H33  H  0  1  N  N  N  47.511  14.485  35.941   5.278   3.317  -1.623  H33  9YB  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9YB  C9   C8   DOUB  Y  N   1  
9YB  C9   C10  SING  Y  N   2  
9YB  C8   C7   SING  Y  N   3  
9YB  C10  C11  DOUB  Y  N   4  
9YB  O23  C22  SING  N  N   5  
9YB  C7   C6   DOUB  Y  N   6  
9YB  C17  C18  SING  N  N   7  
9YB  C17  N14  SING  N  N   8  
9YB  C18  C19  SING  N  N   9  
9YB  C11  C6   SING  Y  N  10  
9YB  C11  C12  SING  Y  N  11  
9YB  C22  C21  SING  N  N  12  
9YB  C13  N14  SING  N  N  13  
9YB  C13  C12  SING  N  N  14  
9YB  C6   C3   SING  Y  N  15  
9YB  N14  C15  SING  N  N  16  
9YB  C21  N20  SING  N  N  17  
9YB  C12  C5   DOUB  Y  N  18  
9YB  C19  N20  SING  Y  N  19  
9YB  C19  C16  DOUB  Y  N  20  
9YB  N20  N24  SING  Y  N  21  
9YB  C15  C16  SING  N  N  22  
9YB  C3   O2   SING  N  N  23  
9YB  C3   C4   DOUB  Y  N  24  
9YB  C16  C25  SING  Y  N  25  
9YB  C5   C4   SING  Y  N  26  
9YB  O2   C1   SING  N  N  27  
9YB  N24  C25  DOUB  Y  N  28  
9YB  C25  C26  SING  N  N  29  
9YB  C26  O27  DOUB  N  N  30  
9YB  C26  N28  SING  N  N  31  
9YB  O39  C37  DOUB  N  N  32  
9YB  N28  C29  SING  N  N  33  
9YB  C37  C30  SING  N  N  34  
9YB  C37  O38  SING  N  N  35  
9YB  C29  C30  SING  N  N  36  
9YB  C29  C31  SING  N  N  37  
9YB  C32  C31  DOUB  Y  N  38  
9YB  C32  C33  SING  Y  N  39  
9YB  C31  C36  SING  Y  N  40  
9YB  C33  C34  DOUB  Y  N  41  
9YB  C36  C35  DOUB  Y  N  42  
9YB  C34  C35  SING  Y  N  43  
9YB  C4   H1   SING  N  N  44  
9YB  C5   H2   SING  N  N  45  
9YB  C7   H3   SING  N  N  46  
9YB  C8   H4   SING  N  N  47  
9YB  C9   H5   SING  N  N  48  
9YB  C10  H6   SING  N  N  49  
9YB  C13  H7   SING  N  N  50  
9YB  C13  H8   SING  N  N  51  
9YB  C1   H9   SING  N  N  52  
9YB  C1   H10  SING  N  N  53  
9YB  C1   H11  SING  N  N  54  
9YB  C15  H13  SING  N  N  55  
9YB  C15  H14  SING  N  N  56  
9YB  C17  H15  SING  N  N  57  
9YB  C17  H16  SING  N  N  58  
9YB  C18  H17  SING  N  N  59  
9YB  C18  H18  SING  N  N  60  
9YB  C21  H19  SING  N  N  61  
9YB  C21  H20  SING  N  N  62  
9YB  C22  H21  SING  N  N  63  
9YB  C22  H22  SING  N  N  64  
9YB  O23  H23  SING  N  N  65  
9YB  N28  H24  SING  N  N  66  
9YB  C29  H25  SING  N  N  67  
9YB  C30  H26  SING  N  N  68  
9YB  C30  H27  SING  N  N  69  
9YB  O38  H28  SING  N  N  70  
9YB  C32  H29  SING  N  N  71  
9YB  C33  H30  SING  N  N  72  
9YB  C34  H31  SING  N  N  73  
9YB  C35  H32  SING  N  N  74  
9YB  C36  H33  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9YB  InChI             InChI                 1.03   "InChI=1S/C30H32N4O5/c1-39-27-12-11-21(22-9-5-6-10-23(22)27)18-33-14-13-26-24(19-33)29(32-34(26)15-16-35)30(38)31-25(17-28(36)37)20-7-3-2-4-8-20/h2-12,25,35H,13-19H2,1H3,(H,31,38)(H,36,37)/t25-/m1/s1"  
9YB  InChIKey          InChI                 1.03   FEINFPMXJVPOSJ-RUZDIDTESA-N  
9YB  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(CN2CCc3n(CCO)nc(C(=O)N[C@H](CC(O)=O)c4ccccc4)c3C2)c5ccccc15"  
9YB  SMILES            CACTVS                3.385  "COc1ccc(CN2CCc3n(CCO)nc(C(=O)N[CH](CC(O)=O)c4ccccc4)c3C2)c5ccccc15"  
9YB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "COc1ccc(c2c1cccc2)CN3CCc4c(c(nn4CCO)C(=O)N[C@H](CC(=O)O)c5ccccc5)C3"  
9YB  SMILES            "OpenEye OEToolkits"  2.0.6  "COc1ccc(c2c1cccc2)CN3CCc4c(c(nn4CCO)C(=O)NC(CC(=O)O)c5ccccc5)C3"  
#
_pdbx_chem_comp_identifier.comp_id          9YB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(3~{R})-3-[[1-(2-hydroxyethyl)-5-[(4-methoxynaphthalen-1-yl)methyl]-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-3-yl]carbonylamino]-3-phenyl-propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9YB  "Create component"  2017-08-01  EBI   
9YB  "Initial release"   2019-03-06  RCSB  
##
