data_9XB
# 
_chem_comp.id                                    9XB 
_chem_comp.name                                  "Pamamycin 607" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H61 N O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-07-24 
_chem_comp.pdbx_modified_date                    2018-04-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        607.861 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9XB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5OJY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9XB C13  C1  C 0 1 N N N 16.189 -52.904 -11.086 -4.970 0.745  1.014  C13  9XB 1   
9XB C15  C2  C 0 1 N N N 18.985 -49.560 -11.567 -2.227 4.246  0.777  C15  9XB 2   
9XB C20  C3  C 0 1 N N S 16.074 -46.470 -13.861 0.199  1.369  3.325  C20  9XB 3   
9XB C21  C4  C 0 1 N N N 15.001 -46.545 -14.942 -1.071 1.406  4.182  C21  9XB 4   
9XB C22  C5  C 0 1 N N R 16.108 -45.140 -13.123 1.033  0.152  3.671  C22  9XB 5   
9XB C24  C6  C 0 1 N N S 14.631 -43.531 -12.442 2.685  -1.277 2.972  C24  9XB 6   
9XB C26  C7  C 0 1 N N N 16.439 -43.941 -13.993 0.297  -1.177 3.429  C26  9XB 7   
9XB C28  C8  C 0 1 N N S 12.269 -44.173 -11.912 2.857  -1.737 0.494  C28  9XB 8   
9XB C01  C9  C 0 1 N N N 10.817 -52.833 -10.054 -1.995 -3.922 -0.685 C01  9XB 9   
9XB C02  C10 C 0 1 N N N 9.523  -52.739 -9.187  -1.660 -4.958 0.390  C02  9XB 10  
9XB C03  C11 C 0 1 N N N 11.430 -51.397 -10.132 -3.129 -3.022 -0.191 C03  9XB 11  
9XB C04  C12 C 0 1 N N R 12.619 -51.320 -11.139 -3.463 -1.986 -1.267 C04  9XB 12  
9XB C06  C13 C 0 1 N N N 12.017 -49.315 -12.298 -5.343 -3.196 -2.197 C06  9XB 13  
9XB C07  C14 C 0 1 N N N 13.055 -49.072 -10.155 -3.995 -1.773 -3.619 C07  9XB 14  
9XB C08  C15 C 0 1 N N N 13.820 -52.115 -10.588 -4.509 -1.009 -0.726 C08  9XB 15  
9XB C09  C16 C 0 1 N N S 14.993 -52.156 -11.586 -3.909 -0.209 0.432  C09  9XB 16  
9XB C11  C17 C 0 1 N N R 16.880 -50.850 -12.061 -2.834 1.823  0.732  C11  9XB 17  
9XB C12  C18 C 0 1 N N N 17.313 -52.294 -11.861 -4.343 2.152  0.864  C12  9XB 18  
9XB C14  C19 C 0 1 N N R 17.581 -49.896 -11.056 -2.100 2.941  -0.011 C14  9XB 19  
9XB C16  C20 C 0 1 N N S 16.740 -48.628 -10.806 -0.614 2.571  -0.154 C16  9XB 20  
9XB C18  C21 C 0 1 N N N 15.840 -47.552 -12.802 -0.174 1.403  1.872  C18  9XB 21  
9XB C25  C22 C 0 1 N N N 15.576 -42.858 -13.428 1.418  -2.154 3.007  C25  9XB 22  
9XB C27  C23 C 0 1 N N N 13.163 -43.152 -12.662 3.606  -1.642 1.826  C27  9XB 23  
9XB C30  C24 C 0 1 N N N 12.563 -45.429 -9.933  2.675  -0.456 -1.520 C30  9XB 24  
9XB C32  C25 C 0 1 N N R 13.314 -45.569 -8.608  3.191  0.592  -2.479 C32  9XB 25  
9XB C33  C26 C 0 1 N N N 12.850 -44.539 -7.571  4.626  0.241  -2.872 C33  9XB 26  
9XB C34  C27 C 0 1 N N R 14.786 -45.345 -8.921  3.164  1.943  -1.770 C34  9XB 27  
9XB C36  C28 C 0 1 N N S 16.676 -46.494 -9.556  1.583  3.454  -0.958 C36  9XB 28  
9XB C37  C29 C 0 1 N N N 16.997 -45.680 -8.307  2.324  4.193  -2.081 C37  9XB 29  
9XB C38  C30 C 0 1 N N N 15.675 -45.299 -7.730  3.161  3.101  -2.779 C38  9XB 30  
9XB C39  C31 C 0 1 N N R 17.187 -47.919 -9.512  0.073  3.609  -1.045 C39  9XB 31  
9XB C40  C32 C 0 1 N N N 16.647 -48.617 -8.247  -0.428 3.411  -2.476 C40  9XB 32  
9XB C41  C33 C 0 1 N N N 10.772 -43.775 -11.869 3.048  -3.143 -0.086 C41  9XB 33  
9XB C42  C34 C 0 1 N N N 10.235 -43.586 -13.311 4.538  -3.402 -0.317 C42  9XB 34  
9XB C43  C35 C 0 1 N N N 10.374 -44.880 -14.178 4.719  -4.752 -1.013 C43  9XB 35  
9XB N05  N1  N 0 1 N N N 13.019 -49.904 -11.387 -3.996 -2.667 -2.454 N05  9XB 36  
9XB O10  O1  O 0 1 N N N 15.429 -50.813 -11.888 -2.822 0.601  -0.045 O10  9XB 37  
9XB O17  O2  O 0 1 N N N 16.886 -47.722 -11.892 -0.010 2.541  1.166  O17  9XB 38  
9XB O19  O3  O 0 1 N N N 14.830 -48.177 -12.720 -0.623 0.433  1.308  O19  9XB 39  
9XB O23  O4  O 0 1 N N N 14.770 -44.964 -12.662 2.220  0.078  2.865  O23  9XB 40  
9XB O29  O5  O 0 1 N N N 12.715 -44.211 -10.599 3.398  -0.763 -0.433 O29  9XB 41  
9XB O31  O6  O 0 1 N N N 11.870 -46.282 -10.430 1.617  -0.993 -1.742 O31  9XB 42  
9XB O35  O7  O 0 1 N N N 15.238 -46.491 -9.685  1.948  2.069  -1.011 O35  9XB 43  
9XB H132 H1  H 0 0 N N N 16.100 -53.980 -11.298 -5.898 0.678  0.445  H132 9XB 44  
9XB H131 H2  H 0 0 N N N 16.326 -52.754 -10.005 -5.152 0.518  2.065  H131 9XB 45  
9XB H151 H3  H 0 0 N N N 19.483 -48.884 -10.856 -1.704 5.042  0.248  H151 9XB 46  
9XB H152 H4  H 0 0 N N N 19.571 -50.486 -11.664 -3.280 4.508  0.878  H152 9XB 47  
9XB H153 H5  H 0 0 N N N 18.910 -49.069 -12.548 -1.788 4.117  1.766  H153 9XB 48  
9XB H201 H6  H 0 0 N N N 17.056 -46.641 -14.326 0.780  2.279  3.556  H201 9XB 49  
9XB H213 H7  H 0 0 N N N 15.038 -47.531 -15.429 -0.797 1.451  5.236  H213 9XB 50  
9XB H211 H8  H 0 0 N N N 14.011 -46.398 -14.486 -1.659 2.286  3.922  H211 9XB 51  
9XB H212 H9  H 0 0 N N N 15.180 -45.760 -15.691 -1.660 0.508  3.998  H212 9XB 52  
9XB H221 H10 H 0 0 N N N 16.814 -45.198 -12.282 1.341  0.196  4.726  H221 9XB 53  
9XB H241 H11 H 0 0 N N N 14.925 -43.270 -11.415 3.208  -1.388 3.925  H241 9XB 54  
9XB H262 H12 H 0 0 N N N 16.187 -44.137 -15.046 -0.177 -1.527 4.351  H262 9XB 55  
9XB H261 H13 H 0 0 N N N 17.504 -43.678 -13.913 -0.429 -1.087 2.633  H261 9XB 56  
9XB H281 H14 H 0 0 N N N 12.365 -45.156 -12.396 1.798  -1.539 0.660  H281 9XB 57  
9XB H011 H15 H 0 0 N N N 10.568 -53.191 -11.064 -1.113 -3.315 -0.892 H011 9XB 58  
9XB H012 H16 H 0 0 N N N 11.534 -53.523 -9.586  -2.306 -4.432 -1.597 H012 9XB 59  
9XB H021 H17 H 0 0 N N N 9.061  -53.734 -9.108  -2.542 -5.565 0.596  H021 9XB 60  
9XB H023 H18 H 0 0 N N N 9.781  -52.374 -8.182  -0.852 -5.599 0.038  H023 9XB 61  
9XB H022 H19 H 0 0 N N N 8.815  -52.042 -9.659  -1.349 -4.448 1.302  H022 9XB 62  
9XB H031 H20 H 0 0 N N N 11.792 -51.111 -9.133  -4.010 -3.629 0.015  H031 9XB 63  
9XB H032 H21 H 0 0 N N N 10.647 -50.694 -10.453 -2.817 -2.512 0.720  H032 9XB 64  
9XB H041 H22 H 0 0 N N N 12.301 -51.778 -12.087 -2.560 -1.439 -1.537 H041 9XB 65  
9XB H062 H23 H 0 0 N N N 12.280 -48.267 -12.505 -6.011 -2.376 -1.935 H062 9XB 66  
9XB H063 H24 H 0 0 N N N 12.001 -49.882 -13.241 -5.714 -3.695 -3.092 H063 9XB 67  
9XB H061 H25 H 0 0 N N N 11.024 -49.358 -11.827 -5.302 -3.909 -1.374 H061 9XB 68  
9XB H073 H26 H 0 0 N N N 13.794 -49.486 -9.454  -4.735 -0.985 -3.473 H073 9XB 69  
9XB H072 H27 H 0 0 N N N 13.335 -48.041 -10.417 -3.007 -1.326 -3.734 H072 9XB 70  
9XB H071 H28 H 0 0 N N N 12.061 -49.073 -9.683  -4.242 -2.342 -4.515 H071 9XB 71  
9XB H082 H29 H 0 0 N N N 13.497 -53.145 -10.377 -4.813 -0.327 -1.520 H082 9XB 72  
9XB H081 H30 H 0 0 N N N 14.163 -51.640 -9.657  -5.377 -1.565 -0.373 H081 9XB 73  
9XB H091 H31 H 0 0 N N N 14.638 -52.639 -12.509 -3.556 -0.888 1.208  H091 9XB 74  
9XB H111 H32 H 0 0 N N N 17.141 -50.536 -13.082 -2.391 1.658  1.714  H111 9XB 75  
9XB H121 H33 H 0 0 N N N 17.442 -52.801 -12.829 -4.713 2.647  -0.034 H121 9XB 76  
9XB H122 H34 H 0 0 N N N 18.253 -52.345 -11.292 -4.532 2.761  1.748  H122 9XB 77  
9XB H141 H35 H 0 0 N N N 17.684 -50.430 -10.100 -2.539 3.069  -1.000 H141 9XB 78  
9XB H161 H36 H 0 0 N N N 15.686 -48.923 -10.697 -0.528 1.589  -0.620 H161 9XB 79  
9XB H252 H37 H 0 0 N N N 16.195 -42.109 -12.911 1.204  -2.572 2.032  H252 9XB 80  
9XB H251 H38 H 0 0 N N N 15.004 -42.370 -14.231 1.522  -2.932 3.765  H251 9XB 81  
9XB H271 H39 H 0 0 N N N 12.979 -42.141 -12.270 4.384  -0.878 1.742  H271 9XB 82  
9XB H272 H40 H 0 0 N N N 12.931 -43.177 -13.737 4.094  -2.608 2.022  H272 9XB 83  
9XB H321 H41 H 0 0 N N N 13.170 -46.584 -8.208  2.563  0.627  -3.363 H321 9XB 84  
9XB H333 H42 H 0 0 N N N 13.416 -44.677 -6.638  4.641  -0.738 -3.352 H333 9XB 85  
9XB H331 H43 H 0 0 N N N 13.025 -43.524 -7.959  5.007  0.992  -3.564 H331 9XB 86  
9XB H332 H44 H 0 0 N N N 11.777 -44.676 -7.373  5.251  0.218  -1.980 H332 9XB 87  
9XB H341 H45 H 0 0 N N N 14.899 -44.422 -9.509  4.019  2.033  -1.098 H341 9XB 88  
9XB H361 H46 H 0 0 N N N 17.123 -45.989 -10.425 1.924  3.853  0.008  H361 9XB 89  
9XB H371 H47 H 0 0 N N N 17.569 -46.286 -7.589  1.666  4.678  -2.787 H371 9XB 90  
9XB H372 H48 H 0 0 N N N 17.575 -44.782 -8.571  2.997  4.940  -1.638 H372 9XB 91  
9XB H381 H49 H 0 0 N N N 15.706 -44.289 -7.295  4.176  3.461  -2.949 H381 9XB 92  
9XB H382 H50 H 0 0 N N N 15.352 -46.019 -6.964  2.690  2.798  -3.712 H382 9XB 93  
9XB H391 H51 H 0 0 N N N 18.286 -47.909 -9.472  -0.209 4.607  -0.707 H391 9XB 94  
9XB H401 H52 H 0 0 N N N 16.992 -48.076 -7.354  -1.509 3.548  -2.503 H401 9XB 95  
9XB H402 H53 H 0 0 N N N 15.547 -48.621 -8.272  0.047  4.141  -3.131 H402 9XB 96  
9XB H403 H54 H 0 0 N N N 17.017 -49.653 -8.214  -0.181 2.405  -2.812 H403 9XB 97  
9XB H412 H55 H 0 0 N N N 10.661 -42.833 -11.312 2.655  -3.881 0.613  H412 9XB 98  
9XB H411 H56 H 0 0 N N N 10.198 -44.568 -11.367 2.515  -3.221 -1.033 H411 9XB 99  
9XB H421 H57 H 0 0 N N N 10.800 -42.776 -13.794 4.951  -2.612 -0.943 H421 9XB 100 
9XB H422 H58 H 0 0 N N N 9.172  -43.310 -13.258 5.057  -3.415 0.642  H422 9XB 101 
9XB H432 H59 H 0 0 N N N 9.979  -44.690 -15.187 5.781  -4.937 -1.177 H432 9XB 102 
9XB H431 H60 H 0 0 N N N 11.435 -45.163 -14.247 4.306  -5.543 -0.386 H431 9XB 103 
9XB H433 H61 H 0 0 N N N 9.806  -45.697 -13.710 4.200  -4.739 -1.971 H433 9XB 104 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9XB C21 C20  SING N N 1   
9XB C43 C42  SING N N 2   
9XB C26 C25  SING N N 3   
9XB C26 C22  SING N N 4   
9XB C20 C22  SING N N 5   
9XB C20 C18  SING N N 6   
9XB C25 C24  SING N N 7   
9XB C42 C41  SING N N 8   
9XB C22 O23  SING N N 9   
9XB C18 O19  DOUB N N 10  
9XB C18 O17  SING N N 11  
9XB C27 C24  SING N N 12  
9XB C27 C28  SING N N 13  
9XB O23 C24  SING N N 14  
9XB C06 N05  SING N N 15  
9XB C11 O10  SING N N 16  
9XB C11 C12  SING N N 17  
9XB C11 C14  SING N N 18  
9XB C28 C41  SING N N 19  
9XB C28 O29  SING N N 20  
9XB O17 C16  SING N N 21  
9XB O10 C09  SING N N 22  
9XB C12 C13  SING N N 23  
9XB C09 C13  SING N N 24  
9XB C09 C08  SING N N 25  
9XB C15 C14  SING N N 26  
9XB N05 C04  SING N N 27  
9XB N05 C07  SING N N 28  
9XB C04 C08  SING N N 29  
9XB C04 C03  SING N N 30  
9XB C14 C16  SING N N 31  
9XB C16 C39  SING N N 32  
9XB O29 C30  SING N N 33  
9XB O31 C30  DOUB N N 34  
9XB C03 C01  SING N N 35  
9XB C01 C02  SING N N 36  
9XB C30 C32  SING N N 37  
9XB O35 C36  SING N N 38  
9XB O35 C34  SING N N 39  
9XB C36 C39  SING N N 40  
9XB C36 C37  SING N N 41  
9XB C39 C40  SING N N 42  
9XB C34 C32  SING N N 43  
9XB C34 C38  SING N N 44  
9XB C32 C33  SING N N 45  
9XB C37 C38  SING N N 46  
9XB C13 H132 SING N N 47  
9XB C13 H131 SING N N 48  
9XB C15 H151 SING N N 49  
9XB C15 H152 SING N N 50  
9XB C15 H153 SING N N 51  
9XB C20 H201 SING N N 52  
9XB C21 H213 SING N N 53  
9XB C21 H211 SING N N 54  
9XB C21 H212 SING N N 55  
9XB C22 H221 SING N N 56  
9XB C24 H241 SING N N 57  
9XB C26 H262 SING N N 58  
9XB C26 H261 SING N N 59  
9XB C28 H281 SING N N 60  
9XB C01 H011 SING N N 61  
9XB C01 H012 SING N N 62  
9XB C02 H021 SING N N 63  
9XB C02 H023 SING N N 64  
9XB C02 H022 SING N N 65  
9XB C03 H031 SING N N 66  
9XB C03 H032 SING N N 67  
9XB C04 H041 SING N N 68  
9XB C06 H062 SING N N 69  
9XB C06 H063 SING N N 70  
9XB C06 H061 SING N N 71  
9XB C07 H073 SING N N 72  
9XB C07 H072 SING N N 73  
9XB C07 H071 SING N N 74  
9XB C08 H082 SING N N 75  
9XB C08 H081 SING N N 76  
9XB C09 H091 SING N N 77  
9XB C11 H111 SING N N 78  
9XB C12 H121 SING N N 79  
9XB C12 H122 SING N N 80  
9XB C14 H141 SING N N 81  
9XB C16 H161 SING N N 82  
9XB C25 H252 SING N N 83  
9XB C25 H251 SING N N 84  
9XB C27 H271 SING N N 85  
9XB C27 H272 SING N N 86  
9XB C32 H321 SING N N 87  
9XB C33 H333 SING N N 88  
9XB C33 H331 SING N N 89  
9XB C33 H332 SING N N 90  
9XB C34 H341 SING N N 91  
9XB C36 H361 SING N N 92  
9XB C37 H371 SING N N 93  
9XB C37 H372 SING N N 94  
9XB C38 H381 SING N N 95  
9XB C38 H382 SING N N 96  
9XB C39 H391 SING N N 97  
9XB C40 H401 SING N N 98  
9XB C40 H402 SING N N 99  
9XB C40 H403 SING N N 100 
9XB C41 H412 SING N N 101 
9XB C41 H411 SING N N 102 
9XB C42 H421 SING N N 103 
9XB C42 H422 SING N N 104 
9XB C43 H432 SING N N 105 
9XB C43 H431 SING N N 106 
9XB C43 H433 SING N N 107 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9XB InChI            InChI                1.03  
"InChI=1S/C35H61NO7/c1-9-11-25(36(7)8)19-27-13-15-29(39-27)21(3)33-22(4)30-17-18-32(42-30)24(6)34(37)41-26(12-10-2)20-28-14-16-31(40-28)23(5)35(38)43-33/h21-33H,9-20H2,1-8H3/t21-,22-,23+,24-,25-,26+,27+,28+,29-,30+,31-,32-,33+/m1/s1" 
9XB InChIKey         InChI                1.03  AHOIPAFUOXGGQB-IKNPUDIKSA-N 
9XB SMILES_CANONICAL CACTVS               3.385 "CCC[C@H]1C[C@@H]2CC[C@@H](O2)[C@H](C)C(=O)O[C@@H]([C@H](C)[C@H]3CC[C@@H](C[C@@H](CCC)N(C)C)O3)[C@H](C)[C@@H]4CC[C@@H](O4)[C@@H](C)C(=O)O1" 
9XB SMILES           CACTVS               3.385 "CCC[CH]1C[CH]2CC[CH](O2)[CH](C)C(=O)O[CH]([CH](C)[CH]3CC[CH](C[CH](CCC)N(C)C)O3)[CH](C)[CH]4CC[CH](O4)[CH](C)C(=O)O1" 
9XB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC[C@H]1C[C@@H]2CC[C@@H](O2)[C@@H](C(=O)O[C@H]([C@@H]([C@@H]3CC[C@@H](O3)[C@H](C(=O)O1)C)C)[C@H](C)[C@H]4CC[C@H](O4)C[C@@H](CCC)N(C)C)C" 
9XB SMILES           "OpenEye OEToolkits" 2.0.6 "CCCC1CC2CCC(O2)C(C(=O)OC(C(C3CCC(O3)C(C(=O)O1)C)C)C(C)C4CCC(O4)CC(CCC)N(C)C)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9XB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
"(1~{R},2~{S},5~{S},6~{R},7~{S},10~{R},11~{R},14~{S},16~{S})-5-[(1~{R})-1-[(2~{R},5~{S})-5-[(2~{R})-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione" 
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loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9XB "Create component" 2017-07-24 EBI  
9XB "Modify name"      2017-08-01 EBI  
9XB "Initial release"  2018-04-11 RCSB 
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