data_51B
# 
_chem_comp.id                                    51B 
_chem_comp.name                                  "(6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H22 N6 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-07-08 
_chem_comp.pdbx_modified_date                    2023-02-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        382.483 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     51B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5C45 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
51B N01 N1  N 0 1 Y N N 27.659 35.603 19.722 2.145  2.097  -0.139 N01 51B 1  
51B C02 C1  C 0 1 Y N N 27.909 36.830 20.105 1.879  0.860  0.232  C02 51B 2  
51B N03 N2  N 0 1 Y N N 27.670 37.318 21.353 2.806  -0.073 0.261  N03 51B 3  
51B C04 C2  C 0 1 Y N N 27.196 36.466 22.310 4.065  0.203  -0.088 C04 51B 4  
51B C05 C3  C 0 1 Y N N 26.944 35.158 22.012 4.386  1.503  -0.487 C05 51B 5  
51B C06 C4  C 0 1 Y N N 27.156 34.696 20.654 3.374  2.455  -0.502 C06 51B 6  
51B O07 O1  O 0 1 N N N 26.906 33.538 20.298 3.634  3.730  -0.881 O07 51B 7  
51B C08 C5  C 0 1 N N S 28.358 37.878 19.099 0.471  0.505  0.634  C08 51B 8  
51B C09 C6  C 0 1 N N N 27.788 39.189 19.664 -0.477 0.766  -0.538 C09 51B 9  
51B N10 N3  N 0 1 N N N 28.001 40.296 18.736 -1.852 0.440  -0.140 N10 51B 10 
51B C11 C7  C 0 1 N N N 27.279 40.027 17.472 -2.297 1.287  0.974  C11 51B 11 
51B C12 C8  C 0 1 N N N 27.805 38.760 16.806 -1.404 1.042  2.192  C12 51B 12 
51B C13 C9  C 0 1 N N N 27.703 37.570 17.748 0.048  1.366  1.828  C13 51B 13 
51B C14 C10 C 0 1 Y N N 27.021 37.145 23.588 5.101  -0.848 -0.053 C14 51B 14 
51B S15 S1  S 0 1 Y N N 27.433 38.804 23.814 4.814  -2.546 0.307  S15 51B 15 
51B C16 C11 C 0 1 Y N N 26.954 38.778 25.423 6.523  -2.908 0.109  C16 51B 16 
51B C17 C12 C 0 1 Y N N 26.472 37.579 25.762 7.190  -1.791 -0.201 C17 51B 17 
51B C18 C13 C 0 1 Y N N 26.506 36.637 24.715 6.414  -0.656 -0.297 C18 51B 18 
51B C19 C14 C 0 1 N N N 27.623 41.602 19.308 -2.771 0.546  -1.281 C19 51B 19 
51B C20 C15 C 0 1 Y N N 27.868 41.815 20.789 -4.112 -0.027 -0.902 C20 51B 20 
51B C21 C16 C 0 1 Y N N 26.828 41.968 21.692 -4.390 -1.370 -1.100 C21 51B 21 
51B N22 N4  N 0 1 Y N N 26.992 42.268 22.991 -5.577 -1.841 -0.756 N22 51B 22 
51B C23 C17 C 0 1 Y N N 28.262 42.457 23.381 -6.495 -1.044 -0.228 C23 51B 23 
51B N24 N5  N 0 1 Y N N 29.353 42.397 22.595 -6.261 0.244  -0.026 N24 51B 24 
51B C25 C18 C 0 1 Y N N 29.121 42.104 21.305 -5.092 0.777  -0.343 C25 51B 25 
51B N26 N6  N 0 1 N N N 28.447 42.788 24.667 -7.727 -1.570 0.120  N26 51B 26 
51B C27 C19 C 0 1 N N N 29.731 43.048 25.286 -8.754 -0.704 0.705  C27 51B 27 
51B H1  H1  H 0 1 N N N 26.593 34.479 22.775 5.394  1.762  -0.776 H1  51B 28 
51B H3  H3  H 0 1 N N N 29.454 37.919 19.016 0.426  -0.548 0.911  H3  51B 29 
51B H4  H4  H 0 1 N N N 28.288 39.417 20.617 -0.421 1.816  -0.824 H4  51B 30 
51B H5  H5  H 0 1 N N N 26.708 39.067 19.836 -0.187 0.144  -1.385 H5  51B 31 
51B H7  H7  H 0 1 N N N 27.419 40.878 16.789 -2.233 2.335  0.681  H7  51B 32 
51B H8  H8  H 0 1 N N N 26.208 39.902 17.688 -3.329 1.043  1.226  H8  51B 33 
51B H9  H9  H 0 1 N N N 27.213 38.556 15.902 -1.725 1.682  3.014  H9  51B 34 
51B H10 H10 H 0 1 N N N 28.859 38.910 16.528 -1.478 -0.003 2.494  H10 51B 35 
51B H11 H11 H 0 1 N N N 26.642 37.330 17.910 0.694  1.152  2.679  H11 51B 36 
51B H12 H12 H 0 1 N N N 28.209 36.706 17.292 0.130  2.421  1.563  H12 51B 37 
51B H13 H13 H 0 1 N N N 27.026 39.620 26.096 6.968  -3.886 0.222  H13 51B 38 
51B H14 H14 H 0 1 N N N 26.092 37.353 26.747 8.257  -1.780 -0.368 H14 51B 39 
51B H15 H15 H 0 1 N N N 26.156 35.620 24.810 6.826  0.311  -0.545 H15 51B 40 
51B H16 H16 H 0 1 N N N 28.188 42.375 18.766 -2.888 1.594  -1.557 H16 51B 41 
51B H17 H17 H 0 1 N N N 26.547 41.741 19.129 -2.365 -0.009 -2.127 H17 51B 42 
51B H18 H18 H 0 1 N N N 25.820 41.838 21.328 -3.646 -2.025 -1.530 H18 51B 43 
51B H19 H19 H 0 1 N N N 29.963 42.093 20.628 -4.906 1.827  -0.171 H19 51B 44 
51B H20 H20 H 0 1 N N N 27.911 43.621 24.807 -7.910 -2.512 -0.023 H20 51B 45 
51B H21 H21 H 0 1 N N N 29.583 43.296 26.347 -8.380 -0.273 1.633  H21 51B 46 
51B H22 H22 H 0 1 N N N 30.366 42.153 25.203 -8.997 0.095  0.005  H22 51B 47 
51B H23 H23 H 0 1 N N N 30.219 43.892 24.777 -9.649 -1.291 0.912  H23 51B 48 
51B H2  H2  H 0 1 N N N 27.111 33.439 19.376 3.896  4.311  -0.154 H2  51B 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
51B C12 C11 SING N N 1  
51B C12 C13 SING N N 2  
51B C11 N10 SING N N 3  
51B C13 C08 SING N N 4  
51B N10 C19 SING N N 5  
51B N10 C09 SING N N 6  
51B C08 C09 SING N N 7  
51B C08 C02 SING N N 8  
51B C19 C20 SING N N 9  
51B N01 C02 DOUB Y N 10 
51B N01 C06 SING Y N 11 
51B C02 N03 SING Y N 12 
51B O07 C06 SING N N 13 
51B C06 C05 DOUB Y N 14 
51B C20 C25 DOUB Y N 15 
51B C20 C21 SING Y N 16 
51B C25 N24 SING Y N 17 
51B N03 C04 DOUB Y N 18 
51B C21 N22 DOUB Y N 19 
51B C05 C04 SING Y N 20 
51B C04 C14 SING N N 21 
51B N24 C23 DOUB Y N 22 
51B N22 C23 SING Y N 23 
51B C23 N26 SING N N 24 
51B C14 S15 SING Y N 25 
51B C14 C18 DOUB Y N 26 
51B S15 C16 SING Y N 27 
51B N26 C27 SING N N 28 
51B C18 C17 SING Y N 29 
51B C16 C17 DOUB Y N 30 
51B C05 H1  SING N N 31 
51B C08 H3  SING N N 32 
51B C09 H4  SING N N 33 
51B C09 H5  SING N N 34 
51B C11 H7  SING N N 35 
51B C11 H8  SING N N 36 
51B C12 H9  SING N N 37 
51B C12 H10 SING N N 38 
51B C13 H11 SING N N 39 
51B C13 H12 SING N N 40 
51B C16 H13 SING N N 41 
51B C17 H14 SING N N 42 
51B C18 H15 SING N N 43 
51B C19 H16 SING N N 44 
51B C19 H17 SING N N 45 
51B C21 H18 SING N N 46 
51B C25 H19 SING N N 47 
51B N26 H20 SING N N 48 
51B C27 H21 SING N N 49 
51B C27 H22 SING N N 50 
51B C27 H23 SING N N 51 
51B O07 H2  SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
51B SMILES           ACDLabs              12.01 "CNc1ncc(cn1)CN1CCCC(C1)c1nc(O)cc(n1)c1cccs1"                                                                                                                                  
51B InChI            InChI                1.06  "InChI=1S/C19H22N6OS/c1-20-19-21-9-13(10-22-19)11-25-6-2-4-14(12-25)18-23-15(8-17(26)24-18)16-5-3-7-27-16/h3,5,7-10,14H,2,4,6,11-12H2,1H3,(H,20,21,22)(H,23,24,26)/t14-/m0/s1" 
51B InChIKey         InChI                1.06  ZSXCVAIJFUEGJR-AWEZNQCLSA-N                                                                                                                                                    
51B SMILES_CANONICAL CACTVS               3.385 "CNc1ncc(CN2CCC[C@@H](C2)c3nc(O)cc(n3)c4sccc4)cn1"                                                                                                                             
51B SMILES           CACTVS               3.385 "CNc1ncc(CN2CCC[CH](C2)c3nc(O)cc(n3)c4sccc4)cn1"                                                                                                                               
51B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1ncc(cn1)CN2CCC[C@@H](C2)c3nc(cc(n3)O)c4cccs4"                                                                                                                             
51B SMILES           "OpenEye OEToolkits" 2.0.7 "CNc1ncc(cn1)CN2CCCC(C2)c3nc(cc(n3)O)c4cccs4"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
51B "SYSTEMATIC NAME" ACDLabs              12.01 "(6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol" 
51B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(3~{S})-1-[[2-(methylamino)pyrimidin-5-yl]methyl]piperidin-3-yl]-6-thiophen-2-yl-pyrimidin-4-ol"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
51B "Create component"   2015-07-08 RCSB 
51B "Initial release"    2015-10-07 RCSB 
51B "Modify value order" 2023-02-21 RCSB 
# 
