data_3YB
# 
_chem_comp.id                                    3YB 
_chem_comp.name                                  "N-({4-[4-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)butyl]thiophen-2-yl}carbonyl)-L-glutamic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H23 N5 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-10 
_chem_comp.pdbx_modified_date                    2016-04-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        461.492 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3YB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4X75 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3YB N1  N1  N 0 1 N N N 34.211 -5.980  -14.155 -8.377  -1.396 -0.954 N1  3YB 1  
3YB C2  C1  C 0 1 N N N 34.886 -5.103  -13.408 -9.559  -0.825 -0.963 C2  3YB 2  
3YB N3  N2  N 0 1 N N N 36.227 -5.172  -13.301 -9.803  0.348  -0.313 N3  3YB 3  
3YB C4  C2  C 0 1 N N N 36.945 -6.115  -13.963 -8.813  0.965  0.371  C4  3YB 4  
3YB N5  N3  N 0 1 Y N N 34.388 -7.897  -15.616 -6.041  -1.209 -0.123 N5  3YB 5  
3YB C6  C3  C 0 1 Y N N 35.401 -8.645  -16.091 -5.393  -0.278 0.650  C6  3YB 6  
3YB C7  C4  C 0 1 Y N N 36.595 -8.156  -15.563 -6.249  0.699  0.992  C7  3YB 7  
3YB C8  C5  C 0 1 Y N N 36.256 -7.048  -14.749 -7.537  0.361  0.389  C8  3YB 8  
3YB C9  C6  C 0 1 Y N N 34.859 -6.945  -14.827 -7.344  -0.846 -0.298 C9  3YB 9  
3YB O10 O1  O 0 1 N N N 38.175 -6.107  -13.819 -9.016  2.014  0.957  O10 3YB 10 
3YB N11 N4  N 0 1 N N N 34.196 -4.076  -12.692 -10.583 -1.429 -1.649 N11 3YB 11 
3YB C12 C7  C 0 1 Y N N 34.396 -6.637  -21.233 1.513   0.186  -0.562 C12 3YB 12 
3YB C13 C8  C 0 1 Y N N 34.077 -5.403  -21.709 2.786   0.308  -0.081 C13 3YB 13 
3YB S14 S1  S 0 1 Y N N 35.519 -4.504  -21.564 2.868   1.704  0.984  S14 3YB 14 
3YB C15 C9  C 0 1 Y N N 36.524 -5.711  -20.893 1.215   2.049  0.735  C15 3YB 15 
3YB C16 C10 C 0 1 Y N N 35.732 -6.816  -20.791 0.661   1.160  -0.097 C16 3YB 16 
3YB C17 C11 C 0 1 N N N 32.794 -4.961  -22.208 3.905   -0.584 -0.401 C17 3YB 17 
3YB O18 O2  O 0 1 N N N 32.718 -3.875  -22.758 3.737   -1.526 -1.153 O18 3YB 18 
3YB N19 N5  N 0 1 N N N 31.634 -5.786  -22.029 5.120   -0.361 0.138  N19 3YB 19 
3YB C20 C12 C 0 1 N N S 30.409 -5.413  -22.466 6.238   -1.252 -0.181 C20 3YB 20 
3YB C21 C13 C 0 1 N N N 29.771 -6.475  -23.151 7.558   -0.499 0.001  C21 3YB 21 
3YB C22 C14 C 0 1 N N N 30.759 -7.302  -23.897 7.642   0.638  -1.020 C22 3YB 22 
3YB C23 C15 C 0 1 N N N 30.060 -8.495  -24.460 8.942   1.379  -0.840 C23 3YB 23 
3YB O24 O3  O 0 1 N N N 29.010 -8.933  -23.911 9.234   2.423  -1.632 O24 3YB 24 
3YB O25 O4  O 0 1 N N N 30.523 -9.064  -25.484 9.721   1.033  0.016  O25 3YB 25 
3YB C26 C16 C 0 1 N N N 29.581 -5.052  -21.379 6.209   -2.445 0.739  C26 3YB 26 
3YB O27 O5  O 0 1 N N N 28.679 -4.189  -21.551 5.343   -2.541 1.576  O27 3YB 27 
3YB O28 O6  O 0 1 N N N 29.718 -5.586  -20.241 7.145   -3.400 0.629  O28 3YB 28 
3YB C29 C17 C 0 1 N N N 35.231 -9.812  -17.004 -3.943  -0.343 1.054  C29 3YB 29 
3YB C30 C18 C 0 1 N N N 35.950 -9.560  -18.290 -3.102  0.474  0.071  C30 3YB 30 
3YB C31 C19 C 0 1 N N N 35.434 -8.340  -18.962 -1.630  0.408  0.481  C31 3YB 31 
3YB C32 C20 C 0 1 N N N 36.196 -8.117  -20.234 -0.789  1.225  -0.502 C32 3YB 32 
3YB H1  H1  H 0 1 N N N 36.705 -4.513  -12.720 -10.689 0.742  -0.341 H1  3YB 33 
3YB H2  H2  H 0 1 N N N 33.421 -8.040  -15.828 -5.632  -2.007 -0.492 H2  3YB 34 
3YB H3  H3  H 0 1 N N N 37.586 -8.546  -15.740 -6.028  1.567  1.596  H3  3YB 35 
3YB H4  H4  H 0 1 N N N 33.200 -4.010  -12.748 -10.427 -2.264 -2.118 H4  3YB 36 
3YB H5  H5  H 0 1 N N N 34.710 -3.423  -12.135 -11.463 -1.021 -1.666 H5  3YB 37 
3YB H6  H6  H 0 1 N N N 33.671 -7.437  -21.194 1.208   -0.595 -1.242 H6  3YB 38 
3YB H7  H7  H 0 1 N N N 37.562 -5.619  -20.611 0.687   2.875  1.188  H7  3YB 39 
3YB H8  H8  H 0 1 N N N 31.734 -6.666  -21.566 5.254   0.390  0.738  H8  3YB 40 
3YB H9  H9  H 0 1 N N N 30.501 -4.554  -23.146 6.151   -1.587 -1.215 H9  3YB 41 
3YB H10 H10 H 0 1 N N N 29.042 -6.058  -23.862 7.605   -0.087 1.009  H10 3YB 42 
3YB H11 H11 H 0 1 N N N 29.249 -7.111  -22.421 8.391   -1.186 -0.151 H11 3YB 43 
3YB H12 H12 H 0 1 N N N 31.557 -7.629  -23.215 7.595   0.226  -2.028 H12 3YB 44 
3YB H13 H13 H 0 1 N N N 31.195 -6.709  -24.714 6.809   1.324  -0.868 H13 3YB 45 
3YB H14 H14 H 0 1 N N N 28.695 -9.691  -24.389 10.079  2.867  -1.479 H14 3YB 46 
3YB H15 H15 H 0 1 N N N 29.072 -5.229  -19.643 7.085   -4.146 1.241  H15 3YB 47 
3YB H16 H16 H 0 1 N N N 34.161 -9.963  -17.208 -3.827  0.064  2.058  H16 3YB 48 
3YB H17 H17 H 0 1 N N N 35.644 -10.713 -16.526 -3.609  -1.381 1.043  H17 3YB 49 
3YB H18 H18 H 0 1 N N N 35.808 -10.424 -18.956 -3.218  0.066  -0.933 H18 3YB 50 
3YB H19 H19 H 0 1 N N N 37.022 -9.429  -18.082 -3.436  1.511  0.083  H19 3YB 51 
3YB H20 H20 H 0 1 N N N 35.564 -7.472  -18.299 -1.514  0.816  1.485  H20 3YB 52 
3YB H21 H21 H 0 1 N N N 34.366 -8.470  -19.191 -1.296  -0.630 0.470  H21 3YB 53 
3YB H22 H22 H 0 1 N N N 35.990 -8.929  -20.947 -1.123  2.263  -0.490 H22 3YB 54 
3YB H23 H23 H 0 1 N N N 37.276 -8.077  -20.027 -0.905  0.817  -1.506 H23 3YB 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3YB O25 C23 DOUB N N 1  
3YB C23 O24 SING N N 2  
3YB C23 C22 SING N N 3  
3YB C22 C21 SING N N 4  
3YB C21 C20 SING N N 5  
3YB O18 C17 DOUB N N 6  
3YB C20 N19 SING N N 7  
3YB C20 C26 SING N N 8  
3YB C17 N19 SING N N 9  
3YB C17 C13 SING N N 10 
3YB C13 S14 SING Y N 11 
3YB C13 C12 DOUB Y N 12 
3YB S14 C15 SING Y N 13 
3YB O27 C26 DOUB N N 14 
3YB C26 O28 SING N N 15 
3YB C12 C16 SING Y N 16 
3YB C15 C16 DOUB Y N 17 
3YB C16 C32 SING N N 18 
3YB C32 C31 SING N N 19 
3YB C31 C30 SING N N 20 
3YB C30 C29 SING N N 21 
3YB C29 C6  SING N N 22 
3YB C6  N5  SING Y N 23 
3YB C6  C7  DOUB Y N 24 
3YB N5  C9  SING Y N 25 
3YB C7  C8  SING Y N 26 
3YB C9  C8  DOUB Y N 27 
3YB C9  N1  SING N N 28 
3YB C8  C4  SING N N 29 
3YB N1  C2  DOUB N N 30 
3YB C4  O10 DOUB N N 31 
3YB C4  N3  SING N N 32 
3YB C2  N3  SING N N 33 
3YB C2  N11 SING N N 34 
3YB N3  H1  SING N N 35 
3YB N5  H2  SING N N 36 
3YB C7  H3  SING N N 37 
3YB N11 H4  SING N N 38 
3YB N11 H5  SING N N 39 
3YB C12 H6  SING N N 40 
3YB C15 H7  SING N N 41 
3YB N19 H8  SING N N 42 
3YB C20 H9  SING N N 43 
3YB C21 H10 SING N N 44 
3YB C21 H11 SING N N 45 
3YB C22 H12 SING N N 46 
3YB C22 H13 SING N N 47 
3YB O24 H14 SING N N 48 
3YB O28 H15 SING N N 49 
3YB C29 H16 SING N N 50 
3YB C29 H17 SING N N 51 
3YB C30 H18 SING N N 52 
3YB C30 H19 SING N N 53 
3YB C31 H20 SING N N 54 
3YB C31 H21 SING N N 55 
3YB C32 H22 SING N N 56 
3YB C32 H23 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3YB SMILES           ACDLabs              12.01 "O=C(O)C(NC(=O)c1scc(c1)CCCCc3cc2C(=O)NC(=Nc2n3)N)CCC(=O)O"                                                                                                                                      
3YB InChI            InChI                1.03  "InChI=1S/C20H23N5O6S/c21-20-24-16-12(17(28)25-20)8-11(22-16)4-2-1-3-10-7-14(32-9-10)18(29)23-13(19(30)31)5-6-15(26)27/h7-9,13H,1-6H2,(H,23,29)(H,26,27)(H,30,31)(H4,21,22,24,25,28)/t13-/m0/s1" 
3YB InChIKey         InChI                1.03  VMGGIKVXYOZFJO-ZDUSSCGKSA-N                                                                                                                                                                      
3YB SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2[nH]c(CCCCc3csc(c3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1"                                                                                                                              
3YB SMILES           CACTVS               3.385 "NC1=Nc2[nH]c(CCCCc3csc(c3)C(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1"                                                                                                                                
3YB SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c(csc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)CCCCc2cc3c([nH]2)N=C(NC3=O)N"                                                                                                                              
3YB SMILES           "OpenEye OEToolkits" 1.9.2 "c1c(csc1C(=O)NC(CCC(=O)O)C(=O)O)CCCCc2cc3c([nH]2)N=C(NC3=O)N"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3YB "SYSTEMATIC NAME" ACDLabs              12.01 "N-({4-[4-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)butyl]thiophen-2-yl}carbonyl)-L-glutamic acid"                   
3YB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-[[4-[4-(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-6-yl)butyl]thiophen-2-yl]carbonylamino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3YB "Create component" 2014-12-10 RCSB 
3YB "Initial release"  2016-04-20 RCSB 
# 
