data_31B
#

_chem_comp.id                                   31B
_chem_comp.name                                 "benzoyl-oxydephosphocoenzyme A"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H39 N7 O15 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        benzoyl-OdCoA
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-05-15
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       775.595
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    31B
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4QD9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
31B  O13  O13  O  0  1  N  N  N  61.071  67.028  36.222  -12.837  -2.354  -0.395  O13  31B   1  
31B  C21  C21  C  0  1  N  N  N  59.924  66.858  36.676  -11.665  -2.594  -0.604  C21  31B   2  
31B  C22  C22  C  0  1  Y  N  N  59.206  65.522  36.363  -11.263  -3.296  -1.840  C22  31B   3  
31B  C27  C27  C  0  1  Y  N  N  59.768  64.652  35.427   -9.917  -3.578  -2.079  C27  31B   4  
31B  C26  C26  C  0  1  Y  N  N  59.119  63.445  35.130   -9.548  -4.234  -3.235  C26  31B   5  
31B  C25  C25  C  0  1  Y  N  N  57.914  63.123  35.796  -10.509  -4.612  -4.157  C25  31B   6  
31B  C24  C24  C  0  1  Y  N  N  57.366  63.979  36.726  -11.845  -4.335  -3.925  C24  31B   7  
31B  C23  C23  C  0  1  Y  N  N  58.020  65.202  37.018  -12.228  -3.685  -2.771  C23  31B   8  
31B  O12  O12  O  0  1  N  N  N  59.345  67.756  37.612  -10.731  -2.215   0.290  O12  31B   9  
31B  C20  C20  C  0  1  N  N  N  59.707  69.151  37.454  -11.198  -1.524   1.479  C20  31B  10  
31B  C19  C19  C  0  1  N  N  N  60.911  69.461  38.272  -10.003  -1.176   2.369  C19  31B  11  
31B  N6   N6   N  0  1  N  N  N  60.543  69.775  39.635   -9.142  -0.215   1.675  N6   31B  12  
31B  C18  C18  C  0  1  N  N  N  59.828  71.026  39.925   -8.021   0.239   2.272  C18  31B  13  
31B  O11  O11  O  0  1  N  N  N  59.563  71.802  39.032   -7.726  -0.149   3.382  O11  31B  14  
31B  C17  C17  C  0  1  N  N  N  59.424  71.350  41.378   -7.135   1.227   1.558  C17  31B  15  
31B  C16  C16  C  0  1  N  N  N  59.504  72.847  41.672   -5.940   1.576   2.448  C16  31B  16  
31B  N5   N5   N  0  1  N  N  N  59.521  73.023  43.096   -5.079   2.537   1.755  N5   31B  17  
31B  C15  C15  C  0  1  N  N  N  58.333  73.139  43.771   -3.959   2.990   2.351  C15  31B  18  
31B  O10  O10  O  0  1  N  N  N  57.264  73.102  43.125   -3.711   2.676   3.496  O10  31B  19  
31B  C14  C14  C  0  1  N  N  R  58.341  73.323  45.288   -3.013   3.888   1.595  C14  31B  20  
31B  O9   O9   O  0  1  N  N  N  59.568  73.938  45.710   -3.640   4.333   0.391  O9   31B  21  
31B  C1   C1   C  0  1  N  N  N  58.197  71.976  46.014   -1.740   3.113   1.251  C1   31B  22  
31B  C    C    C  0  1  N  N  N  56.924  71.311  45.635   -0.991   2.765   2.539  C    31B  23  
31B  C2   C2   C  0  1  N  N  N  59.345  71.053  45.660   -2.110   1.825   0.512  C2   31B  24  
31B  C3   C3   C  0  1  N  N  N  58.204  72.282  47.584   -0.844   3.974   0.358  C3   31B  25  
31B  O    O    O  0  1  N  N  N  57.131  73.235  47.800    0.345   3.250   0.037  O    31B  26  
31B  P    P    P  0  1  N  N  N  57.255  74.485  48.846    1.516   3.854  -0.889  P    31B  27  
31B  O1   O1   O  0  1  N  N  N  56.287  74.312  50.001    0.956   4.082  -2.381  O1   31B  28  
31B  O2   O2   O  0  1  N  N  N  58.640  74.632  49.404    1.970   5.147  -0.330  O2   31B  29  
31B  O3   O3   O  0  1  N  N  N  56.987  75.785  48.040    2.752   2.824  -0.931  O3   31B  30  
31B  P1   P1   P  0  1  N  N  N  55.656  76.559  47.902    4.314   2.964  -1.297  P1   31B  31  
31B  O4   O4   O  0  1  N  N  N  54.554  75.665  47.419    4.468   3.863  -2.463  O4   31B  32  
31B  O5   O5   O  0  1  N  N  N  55.278  77.199  49.134    5.107   3.579  -0.038  O5   31B  33  
31B  C4   C4   C  0  1  N  N  N  56.723  77.200  45.638    6.250   1.318  -2.121  C4   31B  34  
31B  C5   C5   C  0  1  N  N  S  57.025  78.400  44.899    6.493  -0.173  -2.363  C5   31B  35  
31B  C13  C13  C  0  1  N  N  S  56.096  78.468  43.767    7.918  -0.404  -2.913  C13  31B  36  
31B  O8   O8   O  0  1  N  N  N  56.720  79.569  45.756    6.458  -0.897  -1.114  O8   31B  37  
31B  C12  C12  C  0  1  N  N  R  55.902  79.942  43.644    8.370  -1.721  -2.244  C12  31B  38  
31B  O7   O7   O  0  1  N  N  N  54.921  80.379  42.684    9.525  -1.500  -1.433  O7   31B  39  
31B  C6   C6   C  0  1  N  N  R  55.775  80.394  45.020    7.164  -2.131  -1.369  C6   31B  40  
31B  O6   O6   O  0  1  N  N  N  55.960  77.650  46.793    4.914   1.514  -1.654  O6   31B  41  
31B  C7   C7   C  0  1  Y  N  N  54.386  80.148  45.569    7.638  -2.741  -0.075  C7   31B  42  
31B  N4   N4   N  0  1  Y  N  N  54.034  80.222  46.870    7.279  -2.314   1.169  N4   31B  43  
31B  C11  C11  C  0  1  Y  N  N  52.697  79.925  46.945    7.914  -3.120   2.080  C11  31B  44  
31B  C8   C8   C  0  1  Y  N  N  52.244  79.660  45.637    8.664  -4.039   1.327  C8   31B  45  
31B  N    N    N  0  1  Y  N  N  53.329  79.811  44.829    8.447  -3.756   0.020  N    31B  46  
31B  N3   N3   N  0  1  Y  N  N  51.774  79.841  47.963    7.952  -3.189   3.406  N3   31B  47  
31B  C10  C10  C  0  1  Y  N  N  50.511  79.525  47.726    8.681  -4.104   4.010  C10  31B  48  
31B  N2   N2   N  0  1  Y  N  N  50.050  79.270  46.507    9.401  -4.988   3.345  N2   31B  49  
31B  C9   C9   C  0  1  Y  N  N  50.885  79.326  45.435    9.425  -4.998   2.017  C9   31B  50  
31B  N1   N1   N  0  1  N  N  N  50.423  79.067  44.171   10.184  -5.929   1.329  N1   31B  51  
31B  O14  O14  O  0  1  N  N  N  54.907  77.746  44.086    8.781   0.671  -2.536  O14  31B  52  
31B  H1   H1   H  0  1  N  N  N  60.695  64.907  34.935   -9.166  -3.283  -1.362  H1   31B  53  
31B  H2   H2   H  0  1  N  N  N  59.536  62.768  34.399   -8.507  -4.453  -3.422  H2   31B  54  
31B  H3   H3   H  0  1  N  N  N  57.415  62.191  35.572  -10.215  -5.125  -5.060  H3   31B  55  
31B  H4   H4   H  0  1  N  N  N  56.446  63.720  37.228  -12.590  -4.633  -4.649  H4   31B  56  
31B  H5   H5   H  0  1  N  N  N  57.601  65.882  37.745  -13.271  -3.474  -2.589  H5   31B  57  
31B  H6   H6   H  0  1  N  N  N  59.924  69.353  36.395  -11.714  -0.609   1.189  H6   31B  58  
31B  H7   H7   H  0  1  N  N  N  58.870  69.784  37.784  -11.884  -2.169   2.028  H7   31B  59  
31B  H8   H8   H  0  1  N  N  N  61.581  68.588  38.272  -10.360  -0.738   3.301  H8   31B  60  
31B  H9   H9   H  0  1  N  N  N  61.433  70.324  37.832   -9.436  -2.081   2.586  H9   31B  61  
31B  H10  H10  H  0  1  N  N  N  60.774  69.144  40.376   -9.378   0.095   0.787  H10  31B  62  
31B  H11  H11  H  0  1  N  N  N  58.391  71.010  41.544   -6.779   0.789   0.626  H11  31B  63  
31B  H12  H12  H  0  1  N  N  N  60.100  70.817  42.062   -7.702   2.132   1.341  H12  31B  64  
31B  H13  H13  H  0  1  N  N  N  60.423  73.264  41.234   -6.297   2.014   3.380  H13  31B  65  
31B  H14  H14  H  0  1  N  N  N  58.629  73.358  41.244   -5.373   0.671   2.666  H14  31B  66  
31B  H15  H15  H  0  1  N  N  N  60.389  73.061  43.591   -5.315   2.847   0.867  H15  31B  67  
31B  H16  H16  H  0  1  N  N  N  57.490  73.961  45.567   -2.759   4.750   2.212  H16  31B  68  
31B  H17  H17  H  0  1  N  N  N  59.560  74.047  46.654   -3.894   3.618  -0.208  H17  31B  69  
31B  H18  H18  H  0  1  N  N  N  56.840  70.350  46.164   -1.598   2.088   3.141  H18  31B  70  
31B  H19  H19  H  0  1  N  N  N  56.077  71.957  45.910   -0.046   2.282   2.291  H19  31B  71  
31B  H20  H20  H  0  1  N  N  N  56.912  71.134  44.549   -0.796   3.676   3.104  H20  31B  72  
31B  H21  H21  H  0  1  N  N  N  59.223  70.096  46.189   -2.643   2.074  -0.405  H21  31B  73  
31B  H22  H22  H  0  1  N  N  N  59.350  70.874  44.575   -1.203   1.273   0.267  H22  31B  74  
31B  H23  H23  H  0  1  N  N  N  60.296  71.519  45.959   -2.748   1.212   1.149  H23  31B  75  
31B  H24  H24  H  0  1  N  N  N  58.020  71.360  48.156   -1.378   4.222  -0.559  H24  31B  76  
31B  H25  H25  H  0  1  N  N  N  59.169  72.715  47.887   -0.581   4.891   0.885  H25  31B  77  
31B  H26  H26  H  0  1  N  N  N  56.765  74.334  50.822    0.641   3.275  -2.810  H26  31B  78  
31B  H27  H27  H  0  1  N  N  N  54.405  76.918  49.382    5.049   3.041   0.763  H27  31B  79  
31B  H28  H28  H  0  1  N  N  N  56.125  76.509  45.025    6.954   1.684  -1.374  H28  31B  80  
31B  H29  H29  H  0  1  N  N  N  57.649  76.700  45.958    6.393   1.865  -3.053  H29  31B  81  
31B  H30  H30  H  0  1  N  N  N  58.072  78.418  44.561    5.749  -0.571  -3.053  H30  31B  82  
31B  H31  H31  H  0  1  N  N  N  56.568  78.071  42.856    7.896  -0.512  -3.997  H31  31B  83  
31B  H32  H32  H  0  1  N  N  N  56.867  80.334  43.289    8.571  -2.483  -2.997  H32  31B  84  
31B  H33  H33  H  0  1  N  N  N  54.877  81.328  42.685   10.296  -1.183  -1.924  H33  31B  85  
31B  H34  H34  H  0  1  N  N  N  56.032  81.460  45.109    6.525  -2.831  -1.906  H34  31B  86  
31B  H35  H35  H  0  1  N  N  N  54.635  80.451  47.636    6.683  -1.577   1.373  H35  31B  87  
31B  H37  H37  H  0  1  N  N  N  49.826  79.472  48.559    8.689  -4.133   5.090  H37  31B  88  
31B  H38  H38  H  0  1  N  N  N  49.447  78.852  44.210   10.193  -5.925   0.359  H38  31B  89  
31B  H39  H39  H  0  1  N  N  N  50.565  79.871  43.593   10.705  -6.585   1.816  H39  31B  90  
31B  H40  H40  H  0  1  N  N  N  55.106  76.819  44.148    9.688   0.577  -2.855  H40  31B  91  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
31B  C26  C27  DOUB  Y  N   1  
31B  C26  C25  SING  Y  N   2  
31B  C27  C22  SING  Y  N   3  
31B  C25  C24  DOUB  Y  N   4  
31B  O13  C21  DOUB  N  N   5  
31B  C22  C21  SING  N  N   6  
31B  C22  C23  DOUB  Y  N   7  
31B  C21  O12  SING  N  N   8  
31B  C24  C23  SING  Y  N   9  
31B  C20  O12  SING  N  N  10  
31B  C20  C19  SING  N  N  11  
31B  C19  N6   SING  N  N  12  
31B  O11  C18  DOUB  N  N  13  
31B  N6   C18  SING  N  N  14  
31B  C18  C17  SING  N  N  15  
31B  C17  C16  SING  N  N  16  
31B  C16  N5   SING  N  N  17  
31B  O7   C12  SING  N  N  18  
31B  N5   C15  SING  N  N  19  
31B  O10  C15  DOUB  N  N  20  
31B  C12  C13  SING  N  N  21  
31B  C12  C6   SING  N  N  22  
31B  C13  O14  SING  N  N  23  
31B  C13  C5   SING  N  N  24  
31B  C15  C14  SING  N  N  25  
31B  N1   C9   SING  N  N  26  
31B  N    C7   DOUB  Y  N  27  
31B  N    C8   SING  Y  N  28  
31B  C5   C4   SING  N  N  29  
31B  C5   O8   SING  N  N  30  
31B  C6   C7   SING  N  N  31  
31B  C6   O8   SING  N  N  32  
31B  C14  O9   SING  N  N  33  
31B  C14  C1   SING  N  N  34  
31B  C9   C8   DOUB  Y  N  35  
31B  C9   N2   SING  Y  N  36  
31B  C7   N4   SING  Y  N  37  
31B  C    C1   SING  N  N  38  
31B  C8   C11  SING  Y  N  39  
31B  C4   O6   SING  N  N  40  
31B  C2   C1   SING  N  N  41  
31B  C1   C3   SING  N  N  42  
31B  N2   C10  DOUB  Y  N  43  
31B  O6   P1   SING  N  N  44  
31B  N4   C11  SING  Y  N  45  
31B  C11  N3   DOUB  Y  N  46  
31B  O4   P1   DOUB  N  N  47  
31B  C3   O    SING  N  N  48  
31B  C10  N3   SING  Y  N  49  
31B  O    P    SING  N  N  50  
31B  P1   O3   SING  N  N  51  
31B  P1   O5   SING  N  N  52  
31B  O3   P    SING  N  N  53  
31B  P    O2   DOUB  N  N  54  
31B  P    O1   SING  N  N  55  
31B  C27  H1   SING  N  N  56  
31B  C26  H2   SING  N  N  57  
31B  C25  H3   SING  N  N  58  
31B  C24  H4   SING  N  N  59  
31B  C23  H5   SING  N  N  60  
31B  C20  H6   SING  N  N  61  
31B  C20  H7   SING  N  N  62  
31B  C19  H8   SING  N  N  63  
31B  C19  H9   SING  N  N  64  
31B  N6   H10  SING  N  N  65  
31B  C17  H11  SING  N  N  66  
31B  C17  H12  SING  N  N  67  
31B  C16  H13  SING  N  N  68  
31B  C16  H14  SING  N  N  69  
31B  N5   H15  SING  N  N  70  
31B  C14  H16  SING  N  N  71  
31B  O9   H17  SING  N  N  72  
31B  C    H18  SING  N  N  73  
31B  C    H19  SING  N  N  74  
31B  C    H20  SING  N  N  75  
31B  C2   H21  SING  N  N  76  
31B  C2   H22  SING  N  N  77  
31B  C2   H23  SING  N  N  78  
31B  C3   H24  SING  N  N  79  
31B  C3   H25  SING  N  N  80  
31B  O1   H26  SING  N  N  81  
31B  O5   H27  SING  N  N  82  
31B  C4   H28  SING  N  N  83  
31B  C4   H29  SING  N  N  84  
31B  C5   H30  SING  N  N  85  
31B  C13  H31  SING  N  N  86  
31B  C12  H32  SING  N  N  87  
31B  O7   H33  SING  N  N  88  
31B  C6   H34  SING  N  N  89  
31B  N4   H35  SING  N  N  90  
31B  C10  H37  SING  N  N  91  
31B  N1   H38  SING  N  N  92  
31B  N1   H39  SING  N  N  93  
31B  O14  H40  SING  N  N  94  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
31B  SMILES            ACDLabs               12.01  "O=C(OCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC3OC(c2nc1c(ncnc1n2)N)C(O)C3O)O)O)c4ccccc4"  
31B  InChI             InChI                 1.03   "InChI=1S/C28H39N7O15P2/c1-28(2,22(39)26(40)31-9-8-17(36)30-10-11-46-27(41)15-6-4-3-5-7-15)13-48-52(44,45)50-51(42,43)47-12-16-19(37)20(38)21(49-16)25-34-18-23(29)32-14-33-24(18)35-25/h3-7,14,16,19-22,37-39H,8-13H2,1-2H3,(H,30,36)(H,31,40)(H,42,43)(H,44,45)(H3,29,32,33,34,35)/t16-,19+,20+,21-,22-/m0/s1"  
31B  InChIKey          InChI                 1.03   KLLSEACSJWFZEP-NKRQLCBBSA-N  
31B  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@@H]1O[C@@H]([C@H](O)[C@@H]1O)c2[nH]c3ncnc(N)c3n2)[C@@H](O)C(=O)NCCC(=O)NCCOC(=O)c4ccccc4"  
31B  SMILES            CACTVS                3.385  "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)c2[nH]c3ncnc(N)c3n2)[CH](O)C(=O)NCCC(=O)NCCOC(=O)c4ccccc4"  
31B  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CC(C)(COP(=O)(O)OP(=O)(O)OC[C@H]1[C@H]([C@H]([C@H](O1)c2[nH]c3c(n2)c(ncn3)N)O)O)[C@H](C(=O)NCCC(=O)NCCOC(=O)c4ccccc4)O"  
31B  SMILES            "OpenEye OEToolkits"  1.7.6  "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)c2[nH]c3c(n2)c(ncn3)N)O)O)C(C(=O)NCCC(=O)NCCOC(=O)c4ccccc4)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
31B  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3S,5S,9R)-1-[(2S,3S,4R,5R)-5-(6-amino-9H-purin-8-yl)-3,4-dihydroxytetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl benzoate (non-preferred name)"  
31B  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "2-[3-[[(2R)-4-[[[(2S,3S,4R,5R)-5-(6-azanyl-9H-purin-8-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl benzoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
31B  "Create component"  2014-05-15  RCSB  
31B  "Modify synonyms"   2014-06-26  RCSB  
31B  "Initial release"   2015-05-13  RCSB  
31B  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     31B
_pdbx_chem_comp_synonyms.name        benzoyl-OdCoA
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
