data_0YB
# 
_chem_comp.id                                    0YB 
_chem_comp.name                                  "2-(3-bromophenoxy)-4-{(1R)-3,3-dimethyl-1-[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]butyl}benzoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H34 Br N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-04 
_chem_comp.pdbx_modified_date                    2012-10-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        584.501 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0YB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4GFD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0YB C31 C31 C  0 1 Y N N 32.974 5.408  -12.488 3.071  -3.731 1.188  C31 0YB 1  
0YB C24 C24 C  0 1 Y N N 38.574 3.356  -12.366 2.065  1.900  -2.528 C24 0YB 2  
0YB C23 C23 C  0 1 Y N N 38.382 2.192  -13.089 1.783  2.410  -1.279 C23 0YB 3  
0YB C30 C30 C  0 1 Y N N 34.184 4.832  -12.139 3.274  -2.924 0.086  C30 0YB 4  
0YB C32 C32 C  0 1 Y N N 31.852 5.196  -11.713 1.786  -4.068 1.573  C32 0YB 5  
0YB C27 C27 C  0 1 Y N N 36.197 1.946  -12.156 1.899  0.209  -0.327 C27 0YB 6  
0YB C34 C34 C  0 1 Y N N 33.136 3.858  -10.186 0.899  -2.789 -0.248 C34 0YB 7  
0YB C25 C25 C  0 1 Y N N 37.576 3.794  -11.515 2.268  0.527  -2.690 C25 0YB 8  
0YB C22 C22 C  0 1 Y N N 37.189 1.481  -13.003 1.700  1.568  -0.182 C22 0YB 9  
0YB C29 C29 C  0 1 Y N N 34.247 4.067  -10.985 2.187  -2.450 -0.636 C29 0YB 10 
0YB C26 C26 C  0 1 Y N N 36.392 3.090  -11.414 2.189  -0.321 -1.576 C26 0YB 11 
0YB C33 C33 C  0 1 Y N N 31.949 4.433  -10.560 0.701  -3.597 0.856  C33 0YB 12 
0YB C3  C3  C  0 1 N N N 32.818 2.907  -16.464 -3.917 1.963  -1.247 C3  0YB 13 
0YB C2  C2  C  0 1 N N N 31.546 3.335  -16.459 -4.849 1.116  -1.735 C2  0YB 14 
0YB C8  C8  C  0 1 N N N 30.471 2.362  -16.581 -5.160 -0.058 -1.008 C8  0YB 15 
0YB C5  C5  C  0 1 N N N 32.177 0.589  -16.644 -3.598 0.556  0.617  C5  0YB 16 
0YB C36 C36 C  0 1 N N N 37.747 5.030  -10.735 2.565  -0.026 -4.023 C36 0YB 17 
0YB C12 C12 C  0 1 N N N 36.873 1.471  -17.472 -1.632 4.016  2.407  C12 0YB 18 
0YB C11 C11 C  0 1 N N N 35.434 1.984  -17.519 -2.721 3.105  1.834  C11 0YB 19 
0YB C13 C13 C  0 1 N N N 37.375 1.374  -16.035 -0.317 3.239  2.494  C13 0YB 20 
0YB C15 C15 C  0 1 N N N 35.117 1.034  -15.213 -0.943 1.855  0.606  C15 0YB 21 
0YB C10 C10 C  0 1 N N S 34.534 1.146  -16.616 -2.277 2.591  0.462  C10 0YB 22 
0YB C1  C1  C  0 1 N N N 31.190 4.778  -16.299 -5.548 1.417  -3.035 C1  0YB 23 
0YB C19 C19 C  0 1 N N N 35.646 -2.765 -11.722 4.801  3.514  2.316  C19 0YB 24 
0YB C20 C20 C  0 1 N N N 37.923 -2.600 -12.590 4.294  1.837  0.535  C20 0YB 25 
0YB C21 C21 C  0 1 N N N 37.135 -1.097 -10.798 3.581  1.411  2.891  C21 0YB 26 
0YB C17 C17 C  0 1 N N N 36.153 -0.847 -13.122 2.447  3.184  1.544  C17 0YB 27 
0YB C16 C16 C  0 1 N N R 36.993 0.237  -13.843 1.392  2.139  1.178  C16 0YB 28 
0YB C18 C18 C  0 1 N N N 36.750 -1.789 -12.079 3.781  2.487  1.821  C18 0YB 29 
0YB N7  N7  N  0 1 N N N 30.871 1.038  -16.688 -4.522 -0.306 0.154  N7  0YB 30 
0YB N4  N4  N  0 1 N N N 33.144 1.574  -16.607 -3.288 1.672  -0.067 N4  0YB 31 
0YB N14 N14 N  0 1 N N N 36.509 0.512  -15.224 0.065  2.769  1.156  N14 0YB 32 
0YB O9  O9  O  0 1 N N N 29.274 2.647  -16.585 -5.997 -0.837 -1.427 O9  0YB 33 
0YB O6  O6  O  0 1 N N N 32.441 -0.603 -16.662 -3.034 0.322  1.669  O6  0YB 34 
0YB O37 O37 O  0 1 N N N 36.924 5.937  -10.713 2.741  -1.220 -4.160 O37 0YB 35 
0YB O38 O38 O  0 1 N N N 38.914 4.997  -10.066 2.639  0.793  -5.091 O38 0YB 36 
0YB O28 O28 O  0 1 N N N 35.414 3.498  -10.524 2.385  -1.655 -1.720 O28 0YB 37 
0YB BR3 BR3 BR 0 0 N N N 30.415 4.085  -9.504  -1.054 -4.060 1.385  BR3 0YB 38 
0YB H1  H1  H  0 1 N N N 32.908 6.026  -13.371 3.917  -4.103 1.747  H1  0YB 39 
0YB H2  H2  H  0 1 N N N 39.492 3.916  -12.465 2.124  2.560  -3.381 H2  0YB 40 
0YB H3  H3  H  0 1 N N N 39.171 1.829  -13.731 1.625  3.471  -1.155 H3  0YB 41 
0YB H4  H4  H  0 1 N N N 35.060 4.976  -12.753 4.278  -2.661 -0.214 H4  0YB 42 
0YB H5  H5  H  0 1 N N N 30.903 5.622  -12.003 1.630  -4.700 2.435  H5  0YB 43 
0YB H6  H6  H  0 1 N N N 35.264 1.408  -12.077 1.837  -0.440 0.533  H6  0YB 44 
0YB H7  H7  H  0 1 N N N 33.203 3.257  -9.291  0.052  -2.421 -0.808 H7  0YB 45 
0YB H8  H8  H  0 1 N N N 33.613 3.630  -16.352 -3.667 2.864  -1.788 H8  0YB 46 
0YB H9  H9  H  0 1 N N N 36.914 0.474  -17.935 -1.502 4.880  1.755  H9  0YB 47 
0YB H10 H10 H  0 1 N N N 37.519 2.163  -18.032 -1.923 4.352  3.402  H10 0YB 48 
0YB H11 H11 H  0 1 N N N 35.412 3.030  -17.180 -2.879 2.260  2.506  H11 0YB 49 
0YB H12 H12 H  0 1 N N N 35.063 1.926  -18.553 -3.649 3.667  1.730  H12 0YB 50 
0YB H13 H13 H  0 1 N N N 38.393 0.957  -16.039 0.464  3.889  2.887  H13 0YB 51 
0YB H14 H14 H  0 1 N N N 37.393 2.381  -15.593 -0.444 2.383  3.156  H14 0YB 52 
0YB H15 H15 H  0 1 N N N 35.116 2.031  -14.748 -1.068 1.005  1.277  H15 0YB 53 
0YB H16 H16 H  0 1 N N N 34.488 0.353  -14.621 -0.617 1.500  -0.372 H16 0YB 54 
0YB H17 H17 H  0 1 N N N 34.550 0.128  -17.033 -2.158 3.432  -0.220 H17 0YB 55 
0YB H18 H18 H  0 1 N N N 32.110 5.377  -16.221 -4.985 0.980  -3.860 H18 0YB 56 
0YB H19 H19 H  0 1 N N N 30.609 5.111  -17.171 -6.552 0.993  -3.015 H19 0YB 57 
0YB H20 H20 H  0 1 N N N 30.589 4.908  -15.387 -5.613 2.497  -3.172 H20 0YB 58 
0YB H21 H21 H  0 1 N N N 36.015 -3.477 -10.969 4.943  4.281  1.554  H21 0YB 59 
0YB H22 H22 H  0 1 N N N 34.786 -2.213 -11.315 4.435  3.977  3.233  H22 0YB 60 
0YB H23 H23 H  0 1 N N N 35.336 -3.314 -12.624 5.751  3.018  2.513  H23 0YB 61 
0YB H24 H24 H  0 1 N N N 38.297 -3.251 -11.786 4.185  2.537  -0.294 H24 0YB 62 
0YB H25 H25 H  0 1 N N N 37.599 -3.217 -13.441 5.345  1.576  0.654  H25 0YB 63 
0YB H26 H26 H  0 1 N N N 38.725 -1.920 -12.914 3.717  0.936  0.327  H26 0YB 64 
0YB H27 H27 H  0 1 N N N 37.556 -1.832 -10.096 4.548  0.991  3.169  H27 0YB 65 
0YB H28 H28 H  0 1 N N N 37.886 -0.322 -11.011 3.112  1.855  3.769  H28 0YB 66 
0YB H29 H29 H  0 1 N N N 36.244 -0.631 -10.351 2.941  0.621  2.497  H29 0YB 67 
0YB H30 H30 H  0 1 N N N 35.334 -0.313 -12.618 2.568  3.883  0.717  H30 0YB 68 
0YB H31 H31 H  0 1 N N N 35.740 -1.490 -13.913 2.129  3.726  2.434  H31 0YB 69 
0YB H32 H32 H  0 1 N N N 37.995 -0.203 -13.958 1.401  1.338  1.918  H32 0YB 70 
0YB H33 H33 H  0 1 N N N 30.154 0.351  -16.807 -4.733 -1.106 0.660  H33 0YB 71 
0YB H35 H35 H  0 1 N N N 39.013 5.796  -9.561  2.836  0.384  -5.945 H35 0YB 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0YB C11 C12 SING N N 1  
0YB C11 C10 SING N N 2  
0YB C12 C13 SING N N 3  
0YB N7  C5  SING N N 4  
0YB N7  C8  SING N N 5  
0YB O6  C5  DOUB N N 6  
0YB C5  N4  SING N N 7  
0YB C10 N4  SING N N 8  
0YB C10 C15 SING N N 9  
0YB N4  C3  SING N N 10 
0YB O9  C8  DOUB N N 11 
0YB C8  C2  SING N N 12 
0YB C3  C2  DOUB N N 13 
0YB C2  C1  SING N N 14 
0YB C13 N14 SING N N 15 
0YB N14 C15 SING N N 16 
0YB N14 C16 SING N N 17 
0YB C16 C17 SING N N 18 
0YB C16 C22 SING N N 19 
0YB C17 C18 SING N N 20 
0YB C23 C22 DOUB Y N 21 
0YB C23 C24 SING Y N 22 
0YB C22 C27 SING Y N 23 
0YB C20 C18 SING N N 24 
0YB C31 C30 DOUB Y N 25 
0YB C31 C32 SING Y N 26 
0YB C24 C25 DOUB Y N 27 
0YB C27 C26 DOUB Y N 28 
0YB C30 C29 SING Y N 29 
0YB C18 C19 SING N N 30 
0YB C18 C21 SING N N 31 
0YB C32 C33 DOUB Y N 32 
0YB C25 C26 SING Y N 33 
0YB C25 C36 SING N N 34 
0YB C26 O28 SING N N 35 
0YB C29 O28 SING N N 36 
0YB C29 C34 DOUB Y N 37 
0YB C36 O37 DOUB N N 38 
0YB C36 O38 SING N N 39 
0YB C33 C34 SING Y N 40 
0YB C33 BR3 SING N N 41 
0YB C31 H1  SING N N 42 
0YB C24 H2  SING N N 43 
0YB C23 H3  SING N N 44 
0YB C30 H4  SING N N 45 
0YB C32 H5  SING N N 46 
0YB C27 H6  SING N N 47 
0YB C34 H7  SING N N 48 
0YB C3  H8  SING N N 49 
0YB C12 H9  SING N N 50 
0YB C12 H10 SING N N 51 
0YB C11 H11 SING N N 52 
0YB C11 H12 SING N N 53 
0YB C13 H13 SING N N 54 
0YB C13 H14 SING N N 55 
0YB C15 H15 SING N N 56 
0YB C15 H16 SING N N 57 
0YB C10 H17 SING N N 58 
0YB C1  H18 SING N N 59 
0YB C1  H19 SING N N 60 
0YB C1  H20 SING N N 61 
0YB C19 H21 SING N N 62 
0YB C19 H22 SING N N 63 
0YB C19 H23 SING N N 64 
0YB C20 H24 SING N N 65 
0YB C20 H25 SING N N 66 
0YB C20 H26 SING N N 67 
0YB C21 H27 SING N N 68 
0YB C21 H28 SING N N 69 
0YB C21 H29 SING N N 70 
0YB C17 H30 SING N N 71 
0YB C17 H31 SING N N 72 
0YB C16 H32 SING N N 73 
0YB N7  H33 SING N N 74 
0YB O38 H35 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0YB SMILES           ACDLabs              12.01 "O=C(O)c2ccc(cc2Oc1cccc(Br)c1)C(N4CCCC(N3C=C(C(=O)NC3=O)C)C4)CC(C)(C)C" 
0YB InChI            InChI                1.03  
"InChI=1S/C29H34BrN3O5/c1-18-16-33(28(37)31-26(18)34)21-8-6-12-32(17-21)24(15-29(2,3)4)19-10-11-23(27(35)36)25(13-19)38-22-9-5-7-20(30)14-22/h5,7,9-11,13-14,16,21,24H,6,8,12,15,17H2,1-4H3,(H,35,36)(H,31,34,37)/t21-,24+/m0/s1" 
0YB InChIKey         InChI                1.03  SXYGLXXKMZTVNB-XUZZJYLKSA-N 
0YB SMILES_CANONICAL CACTVS               3.370 "CC1=CN([C@H]2CCCN(C2)[C@H](CC(C)(C)C)c3ccc(C(O)=O)c(Oc4cccc(Br)c4)c3)C(=O)NC1=O" 
0YB SMILES           CACTVS               3.370 "CC1=CN([CH]2CCCN(C2)[CH](CC(C)(C)C)c3ccc(C(O)=O)c(Oc4cccc(Br)c4)c3)C(=O)NC1=O" 
0YB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@H]2CCCN(C2)[C@H](CC(C)(C)C)c3ccc(c(c3)Oc4cccc(c4)Br)C(=O)O" 
0YB SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2CCCN(C2)C(CC(C)(C)C)c3ccc(c(c3)Oc4cccc(c4)Br)C(=O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0YB "SYSTEMATIC NAME" ACDLabs              12.01 "2-(3-bromophenoxy)-4-{(1R)-3,3-dimethyl-1-[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]butyl}benzoic acid" 
0YB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-(3-bromanylphenoxy)-4-[(1R)-3,3-dimethyl-1-[(3S)-3-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]piperidin-1-yl]butyl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0YB "Create component" 2012-10-04 RCSB 
0YB "Initial release"  2012-10-19 RCSB 
# 
