data_YVA
# 
_chem_comp.id                                    YVA 
_chem_comp.name                                  "ethyl (4R)-4-({3-cyclopropyl-N-[(2E)-3-(4-ethynylphenyl)prop-2-enoyl]-L-alanyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H35 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        493.595 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YVA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7MAW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YVA C10  C1  C 0 1 N N N N N N -10.003 -9.682  38.445 3.783   3.660  -0.790 C10  YVA 1  
YVA C13  C2  C 0 1 N N N N N N -11.213 -14.243 40.130 4.551   0.234  0.471  C13  YVA 2  
YVA C15  C3  C 0 1 N N N N N N -12.625 -16.332 39.699 5.926   -1.671 -0.322 C15  YVA 3  
YVA C20  C4  C 0 1 N N N N N N -14.863 -16.835 39.910 7.495   -3.381 -0.866 C20  YVA 4  
YVA C21  C5  C 0 1 N N N N N N -15.145 -17.742 38.693 7.611   -4.612 -1.768 C21  YVA 5  
YVA C22  C6  C 0 1 N N N N N N -12.120 -9.163  37.403 4.476   5.571  0.334  C22  YVA 6  
YVA C24  C7  C 0 1 N N N N N N -13.609 -12.005 45.621 -0.876  -3.153 0.789  C24  YVA 7  
YVA C26  C8  C 0 1 N N N N N N -13.574 -13.097 46.691 -1.752  -3.859 -0.249 C26  YVA 8  
YVA C28  C9  C 0 1 N N N N N N -13.375 -6.590  43.460 -5.079  -0.650 0.892  C28  YVA 9  
YVA C01  C10 C 0 1 N N N N N N -13.142 -8.921  42.857 -2.643  -0.697 0.853  C01  YVA 10 
YVA C04  C11 C 0 1 N N S N N N -12.882 -11.318 43.396 -0.207  -0.746 0.816  C04  YVA 11 
YVA C05  C12 C 0 1 N N N N N N -13.601 -12.433 44.144 0.144   -2.135 0.278  C05  YVA 12 
YVA C07  C13 C 0 1 N N R N N N -11.518 -12.726 40.015 3.197   0.933  0.334  C07  YVA 13 
YVA C08  C14 C 0 1 N N N N N N -10.442 -11.946 39.307 3.200   2.217  1.166  C08  YVA 14 
YVA C09  C15 C 0 1 N N S N N N -11.015 -10.529 39.069 4.218   3.200  0.584  C09  YVA 15 
YVA C14  C16 C 0 1 N N N N N N -12.598 -14.890 40.150 4.593   -0.982 -0.457 C14  YVA 16 
YVA C18  C17 C 0 1 N N N N N N -12.853 -11.627 41.919 0.864   0.235  0.414  C18  YVA 17 
YVA C23  C18 C 0 1 N N N N N N -12.199 -10.542 38.095 4.259   4.497  1.423  C23  YVA 18 
YVA C25  C19 C 0 1 N N N N N N -12.288 -12.357 46.301 -0.632  -4.626 0.456  C25  YVA 19 
YVA C27  C20 C 0 1 N N N N N N -13.969 -7.636  42.944 -3.928  -0.270 0.298  C27  YVA 20 
YVA C29  C21 C 0 1 Y N N N N N -15.452 -2.532  43.763 -8.797  0.587  -0.713 C29  YVA 21 
YVA C30  C22 C 0 1 Y N N N N N -14.396 -2.768  42.683 -8.763  -0.214 0.431  C30  YVA 22 
YVA C31  C23 C 0 1 Y N N N N N -13.713 -4.130  42.587 -7.564  -0.614 0.950  C31  YVA 23 
YVA C32  C24 C 0 1 Y N N N N N -14.092 -5.239  43.569 -6.370  -0.221 0.335  C32  YVA 24 
YVA C33  C25 C 0 1 Y N N N N N -15.158 -5.019  44.629 -6.406  0.582  -0.812 C33  YVA 25 
YVA C34  C26 C 0 1 Y N N N N N -15.833 -3.653  44.723 -7.606  0.976  -1.332 C34  YVA 26 
YVA C35  C27 C 0 1 N N N N N N -16.162 -1.169  43.855 -10.055 1.006  -1.256 C35  YVA 27 
YVA C36  C28 C 0 1 N N N N N N -16.692 -0.106  43.921 -11.086 1.349  -1.701 C36  YVA 28 
YVA N02  N1  N 0 1 N N N N N N -13.663 -10.110 43.497 -1.494  -0.318 0.260  N02  YVA 29 
YVA N06  N2  N 0 1 N N N N N N -11.699 -12.353 41.431 2.137   0.043  0.814  N06  YVA 30 
YVA N11  N3  N 0 1 N N N N N N -10.710 -8.833  37.419 3.938   4.991  -0.902 N11  YVA 31 
YVA O03  O1  O 0 1 N N N N N N -12.086 -8.945  42.286 -2.612  -1.395 1.850  O03  YVA 32 
YVA O12  O2  O 0 1 N N N N N N -8.836  -9.664  38.682 3.361   2.934  -1.665 O12  YVA 33 
YVA O16  O3  O 0 1 N N N N N N -13.560 -17.140 40.344 6.190   -2.770 -1.047 O16  YVA 34 
YVA O17  O4  O 0 1 N N N N N N -11.902 -16.748 38.842 6.758   -1.235 0.438  O17  YVA 35 
YVA O19  O5  O 0 1 N N N N N N -13.698 -11.307 41.168 0.581   1.196  -0.269 O19  YVA 36 
YVA H1   H1  H 0 1 N N N N N N -10.629 -14.592 39.266 5.347   0.926  0.198  H1   YVA 37 
YVA H131 H2  H 0 0 N N N N N N -10.663 -14.464 41.057 4.690   -0.091 1.502  H131 YVA 38 
YVA H201 H3  H 0 0 N N N N N N -14.928 -15.776 39.618 7.615   -3.681 0.175  H201 YVA 39 
YVA H202 H4  H 0 0 N N N N N N -15.588 -17.039 40.712 8.272   -2.663 -1.129 H202 YVA 40 
YVA H213 H5  H 0 0 N N N N N N -16.158 -17.542 38.313 6.834   -5.329 -1.505 H213 YVA 41 
YVA H212 H6  H 0 0 N N N N N N -14.409 -17.534 37.902 7.491   -4.312 -2.809 H212 YVA 42 
YVA H211 H7  H 0 0 N N N N N N -15.069 -18.797 38.996 8.590   -5.070 -1.632 H211 YVA 43 
YVA H221 H8  H 0 0 N N N N N N -12.702 -8.414  37.960 3.940   6.486  0.586  H221 YVA 44 
YVA H222 H9  H 0 0 N N N N N N -12.494 -9.224  36.370 5.541   5.776  0.222  H222 YVA 45 
YVA H241 H10 H 0 0 N N N N N N -14.084 -11.046 45.876 -1.327  -2.923 1.755  H241 YVA 46 
YVA H261 H11 H 0 0 N N N N N N -14.035 -12.920 47.674 -2.778  -4.093 0.034  H261 YVA 47 
YVA H262 H12 H 0 0 N N N N N N -13.711 -14.151 46.407 -1.601  -3.596 -1.296 H262 YVA 48 
YVA H281 H13 H 0 0 N N N N N N -12.359 -6.680  43.816 -5.052  -1.269 1.776  H281 YVA 49 
YVA H041 H14 H 0 0 N N N N N N -11.863 -11.182 43.788 -0.276  -0.784 1.903  H041 YVA 50 
YVA H051 H15 H 0 0 N N N N N N -14.630 -12.544 43.771 1.140   -2.415 0.619  H051 YVA 51 
YVA H052 H16 H 0 0 N N N N N N -13.063 -13.385 44.023 0.126   -2.117 -0.812 H052 YVA 52 
YVA H071 H17 H 0 0 N N N N N N -12.469 -12.600 39.476 3.019   1.179  -0.713 H071 YVA 53 
YVA H082 H18 H 0 0 N N N N N N -10.196 -12.423 38.347 2.208   2.667  1.144  H082 YVA 54 
YVA H081 H19 H 0 0 N N N N N N -9.538  -11.891 39.932 3.470   1.982  2.196  H081 YVA 55 
YVA H091 H20 H 0 0 N N N N N N -11.336 -10.101 40.030 5.206   2.742  0.538  H091 YVA 56 
YVA H142 H21 H 0 0 N N N N N N -13.257 -14.311 39.487 3.797   -1.675 -0.184 H142 YVA 57 
YVA H141 H22 H 0 0 N N N N N N -12.983 -14.845 41.180 4.454   -0.657 -1.488 H141 YVA 58 
YVA H231 H23 H 0 0 N N N N N N -13.150 -10.656 38.636 5.090   4.484  2.128  H231 YVA 59 
YVA H232 H24 H 0 0 N N N N N N -12.095 -11.355 37.362 3.313   4.654  1.942  H232 YVA 60 
YVA H252 H25 H 0 0 N N N N N N -11.501 -12.880 45.737 0.256   -4.870 -0.127 H252 YVA 61 
YVA H251 H26 H 0 0 N N N N N N -11.826 -11.649 47.005 -0.921  -5.366 1.203  H251 YVA 62 
YVA H271 H27 H 0 0 N N N N N N -14.991 -7.594  42.597 -3.955  0.349  -0.586 H271 YVA 63 
YVA H301 H28 H 0 0 N N N N N N -14.135 -1.978  41.994 -9.684  -0.517 0.906  H301 YVA 64 
YVA H311 H29 H 0 0 N N N N N N -12.965 -4.309  41.829 -7.538  -1.233 1.835  H311 YVA 65 
YVA H331 H30 H 0 0 N N N N N N -15.434 -5.815  45.304 -5.485  0.887  -1.287 H331 YVA 66 
YVA H341 H31 H 0 0 N N N N N N -16.587 -3.479  45.476 -7.634  1.592  -2.219 H341 YVA 67 
YVA H361 H32 H 0 0 N N N N N N -17.164 0.841   43.980 -12.008 1.656  -2.099 H361 YVA 68 
YVA H021 H33 H 0 0 N N N N N N -14.532 -10.094 43.991 -1.518  0.238  -0.534 H021 YVA 69 
YVA H061 H34 H 0 0 N N N N N N -10.990 -12.614 42.086 2.351   -0.684 1.419  H061 YVA 70 
YVA H111 H35 H 0 0 N N N N N N -10.272 -8.147  36.838 3.717   5.503  -1.696 H111 YVA 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YVA C22 N11  SING N N 1  
YVA C22 C23  SING N N 2  
YVA N11 C10  SING N N 3  
YVA C23 C09  SING N N 4  
YVA C10 O12  DOUB N N 5  
YVA C10 C09  SING N N 6  
YVA C21 C20  SING N N 7  
YVA O17 C15  DOUB N N 8  
YVA C09 C08  SING N N 9  
YVA C08 C07  SING N N 10 
YVA C15 C14  SING N N 11 
YVA C15 O16  SING N N 12 
YVA C20 O16  SING N N 13 
YVA C07 C13  SING N N 14 
YVA C07 N06  SING N N 15 
YVA C13 C14  SING N N 16 
YVA O19 C18  DOUB N N 17 
YVA N06 C18  SING N N 18 
YVA C18 C04  SING N N 19 
YVA O03 C01  DOUB N N 20 
YVA C31 C30  DOUB Y N 21 
YVA C31 C32  SING Y N 22 
YVA C30 C29  SING Y N 23 
YVA C01 C27  SING N N 24 
YVA C01 N02  SING N N 25 
YVA C27 C28  DOUB N E 26 
YVA C04 N02  SING N N 27 
YVA C04 C05  SING N N 28 
YVA C28 C32  SING N N 29 
YVA C32 C33  DOUB Y N 30 
YVA C29 C35  SING N N 31 
YVA C29 C34  DOUB Y N 32 
YVA C35 C36  TRIP N N 33 
YVA C05 C24  SING N N 34 
YVA C33 C34  SING Y N 35 
YVA C24 C25  SING N N 36 
YVA C24 C26  SING N N 37 
YVA C25 C26  SING N N 38 
YVA C13 H1   SING N N 39 
YVA C13 H131 SING N N 40 
YVA C20 H201 SING N N 41 
YVA C20 H202 SING N N 42 
YVA C21 H213 SING N N 43 
YVA C21 H212 SING N N 44 
YVA C21 H211 SING N N 45 
YVA C22 H221 SING N N 46 
YVA C22 H222 SING N N 47 
YVA C24 H241 SING N N 48 
YVA C26 H261 SING N N 49 
YVA C26 H262 SING N N 50 
YVA C28 H281 SING N N 51 
YVA C04 H041 SING N N 52 
YVA C05 H051 SING N N 53 
YVA C05 H052 SING N N 54 
YVA C07 H071 SING N N 55 
YVA C08 H082 SING N N 56 
YVA C08 H081 SING N N 57 
YVA C09 H091 SING N N 58 
YVA C14 H142 SING N N 59 
YVA C14 H141 SING N N 60 
YVA C23 H231 SING N N 61 
YVA C23 H232 SING N N 62 
YVA C25 H252 SING N N 63 
YVA C25 H251 SING N N 64 
YVA C27 H271 SING N N 65 
YVA C30 H301 SING N N 66 
YVA C31 H311 SING N N 67 
YVA C33 H331 SING N N 68 
YVA C34 H341 SING N N 69 
YVA C36 H361 SING N N 70 
YVA N02 H021 SING N N 71 
YVA N06 H061 SING N N 72 
YVA N11 H111 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YVA SMILES           ACDLabs              12.01 "C#Cc1ccc(cc1)/C=C/C(=O)NC(CC1CC1)C(=O)NC(CC1CCNC1=O)CCC(=O)OCC"                                                                                                                                                                    
YVA InChI            InChI                1.03  "InChI=1S/C28H35N3O5/c1-3-19-5-7-20(8-6-19)11-13-25(32)31-24(17-21-9-10-21)28(35)30-23(12-14-26(33)36-4-2)18-22-15-16-29-27(22)34/h1,5-8,11,13,21-24H,4,9-10,12,14-18H2,2H3,(H,29,34)(H,30,35)(H,31,32)/b13-11+/t22-,23+,24-/m0/s1" 
YVA InChIKey         InChI                1.03  JMWBRPAKKKBHFQ-NQRMBFEXSA-N                                                                                                                                                                                                         
YVA SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)NC(=O)\C=C\c3ccc(cc3)C#C"                                                                                                                                                       
YVA SMILES           CACTVS               3.385 "CCOC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)NC(=O)C=Cc3ccc(cc3)C#C"                                                                                                                                                             
YVA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)NC(=O)/C=C/c3ccc(cc3)C#C"                                                                                                                                                       
YVA SMILES           "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CCC(CC1CCNC1=O)NC(=O)C(CC2CC2)NC(=O)C=Cc3ccc(cc3)C#C"                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YVA "SYSTEMATIC NAME" ACDLabs              12.01 "ethyl (4R)-4-({3-cyclopropyl-N-[(2E)-3-(4-ethynylphenyl)prop-2-enoyl]-L-alanyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate"                                  
YVA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "ethyl (4~{R})-4-[[(2~{S})-3-cyclopropyl-2-[[(~{E})-3-(4-ethynylphenyl)prop-2-enoyl]amino]propanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YVA "Create component" 2021-04-01 RCSB 
YVA "Initial release"  2022-10-12 RCSB 
YVA "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YVA 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
