data_YLA
# 
_chem_comp.id                                    YLA 
_chem_comp.name                                  " (S)-2-amino-6-(((prop-2-yn-1-yloxy)carbonyl)amino)hexanoic (((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric)anhydride" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H28 N7 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-28 
_chem_comp.pdbx_modified_date                    2014-03-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        557.451 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CH6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLA C      C      C 0 1 N N N 43.028 133.587 -10.897 1.963  -2.323 -1.400 C      YLA 1  
YLA N      N      N 0 1 N N N 42.575 134.893 -8.913  3.724  -2.280 -3.074 N      YLA 2  
YLA O      O      O 0 1 N N N 43.422 134.510 -11.610 1.882  -3.510 -1.609 O      YLA 3  
YLA N1     N1     N 0 1 Y N N 35.860 125.728 -11.687 -8.806 3.522  -0.610 N1     YLA 4  
YLA O1     O1     O 0 1 N N N 44.731 139.875 -7.763  10.448 1.868  0.933  O1     YLA 5  
YLA C2     C2     C 0 1 Y N N 36.002 125.757 -10.334 -8.436 3.283  0.635  C2     YLA 6  
YLA C3     C3     C 0 1 N N N 45.170 140.855 -8.699  11.586 2.706  0.601  C3     YLA 7  
YLA N3     N3     N 0 1 Y N N 36.980 126.462 -9.724  -7.444 2.470  0.934  N3     YLA 8  
YLA C4     C4     C 0 1 Y N N 37.840 127.199 -10.491 -6.767 1.847  -0.025 C4     YLA 9  
YLA C5     C5     C 0 1 Y N N 37.745 127.195 -11.969 -7.122 2.068  -1.366 C5     YLA 10 
YLA C6     C6     C 0 1 Y N N 36.662 126.385 -12.553 -8.187 2.945  -1.635 C6     YLA 11 
YLA N6     N6     N 0 1 N N N 36.503 126.356 -13.893 -8.583 3.201  -2.936 N6     YLA 12 
YLA C7     C7     C 0 1 N N N 44.384 142.060 -8.540  12.482 2.802  1.765  C7     YLA 13 
YLA N7     N7     N 0 1 Y N N 38.715 127.982 -12.464 -6.285 1.324  -2.129 N7     YLA 14 
YLA C8     C8     C 0 1 Y N N 39.395 128.456 -11.392 -5.459 0.677  -1.360 C8     YLA 15 
YLA C9     C9     C 0 1 N N N 43.713 143.116 -8.370  13.196 2.878  2.693  C9     YLA 16 
YLA N9     N9     N 0 1 Y N N 38.875 127.976 -10.229 -5.715 0.966  -0.052 N9     YLA 17 
YLA CA     CA     C 0 1 N N R 43.175 133.675 -9.396  3.121  -1.537 -1.960 CA     YLA 18 
YLA CB     CB     C 0 1 N N N 44.634 133.490 -8.949  4.167  -1.320 -0.865 CB     YLA 19 
YLA "C1'"  "C1'"  C 0 1 N N R 39.329 128.267 -8.855  -5.000 0.434  1.110  "C1'"  YLA 20 
YLA "C2'"  "C2'"  C 0 1 N N R 40.365 127.296 -8.358  -5.734 -0.804 1.684  "C2'"  YLA 21 
YLA "O2'"  "O2'"  O 0 1 N N N 40.290 127.185 -6.932  -6.747 -0.411 2.612  "O2'"  YLA 22 
YLA "C3'"  "C3'"  C 0 1 N N S 41.678 127.954 -8.745  -4.588 -1.556 2.403  "C3'"  YLA 23 
YLA "O3'"  "O3'"  O 0 1 N N N 42.777 127.504 -7.984  -4.594 -1.259 3.800  "O3'"  YLA 24 
YLA "C4'"  "C4'"  C 0 1 N N R 41.344 129.386 -8.448  -3.306 -1.014 1.741  "C4'"  YLA 25 
YLA "O4'"  "O4'"  O 0 1 N N N 39.969 129.534 -8.863  -3.712 -0.089 0.718  "O4'"  YLA 26 
YLA "C5'"  "C5'"  C 0 1 N N N 42.219 130.396 -9.156  -2.516 -2.166 1.117  "C5'"  YLA 27 
YLA "O5'"  "O5'"  O 0 1 N N N 42.373 129.985 -10.497 -1.275 -1.671 0.609  "O5'"  YLA 28 
YLA OAD    OAD    O 0 1 N N N 45.275 138.106 -9.160  9.670  2.196  -1.119 OAD    YLA 29 
YLA OAF    OAF    O 0 1 N N N 42.756 130.373 -12.893 -0.828 -3.326 -1.244 OAF    YLA 30 
YLA OAI    OAI    O 0 1 N N N 44.513 131.013 -11.075 0.388  -3.680 0.939  OAI    YLA 31 
YLA CAM    CAM    C 0 1 N N N 45.141 135.546 -7.614  6.329  -0.201 -0.303 CAM    YLA 32 
YLA CAN    CAN    C 0 1 N N N 45.468 134.761 -8.871  5.282  -0.418 -1.398 CAN    YLA 33 
YLA CAO    CAO    C 0 1 N N N 46.248 136.502 -7.237  7.444  0.702  -0.835 CAO    YLA 34 
YLA NAW    NAW    N 0 1 N N N 45.708 137.820 -6.995  8.446  0.910  0.214  NAW    YLA 35 
YLA OAY    OAY    O 0 1 N N N 42.384 132.398 -11.481 1.019  -1.703 -0.675 OAY    YLA 36 
YLA CBA    CBA    C 0 1 N N N 45.253 138.538 -8.011  9.527  1.677  -0.030 CBA    YLA 37 
YLA PBN    PBN    P 0 1 N N N 43.089 130.943 -11.549 -0.188 -2.611 -0.117 PBN    YLA 38 
YLA HN     HN     H 0 1 N N N 42.676 134.944 -7.919  4.062  -3.180 -2.767 HN     YLA 39 
YLA HNA    HNA    H 0 1 N N N 43.029 135.678 -9.335  3.072  -2.381 -3.838 HNA    YLA 40 
YLA H2     H2     H 0 1 N N N 35.308 125.196 -9.726  -8.965 3.774  1.438  H2     YLA 41 
YLA H3     H3     H 0 1 N N N 46.231 141.083 -8.521  12.126 2.268  -0.239 H3     YLA 42 
YLA H3A    H3A    H 0 1 N N N 45.045 140.468 -9.721  11.236 3.701  0.328  H3A    YLA 43 
YLA HN6    HN6    H 0 1 N N N 35.716 125.784 -14.123 -9.320 3.807  -3.108 HN6    YLA 44 
YLA HN6A   HN6A   H 0 0 N N N 36.350 127.285 -14.231 -8.123 2.773  -3.676 HN6A   YLA 45 
YLA H8     H8     H 0 1 N N N 40.239 129.127 -11.452 -4.685 0.008  -1.706 H8     YLA 46 
YLA H9     H9     H 0 1 N N N 43.150 144.003 -8.227  13.835 2.946  3.524  H9     YLA 47 
YLA HA     HA     H 0 1 N N N 42.609 132.833 -8.971  2.764  -0.571 -2.319 HA     YLA 48 
YLA HB     HB     H 0 1 N N N 44.625 133.030 -7.950  3.698  -0.848 -0.003 HB     YLA 49 
YLA HBA    HBA    H 0 1 N N N 45.122 132.809 -9.662  4.588  -2.281 -0.569 HBA    YLA 50 
YLA "H1'"  "H1'"  H 0 1 N N N 38.469 128.270 -8.169  -4.887 1.203  1.875  "H1'"  YLA 51 
YLA "H2'"  "H2'"  H 0 1 N N N 40.258 126.320 -8.854  -6.157 -1.411 0.883  "H2'"  YLA 52 
YLA "HO2'" "HO2'" H 0 0 N N N 40.947 126.570 -6.627  -7.235 -1.151 2.998  "HO2'" YLA 53 
YLA "H3'"  "H3'"  H 0 1 N N N 41.856 127.824 -9.823  -4.677 -2.631 2.242  "H3'"  YLA 54 
YLA "HO3'" "HO3'" H 0 0 N N N 43.565 127.950 -8.271  -5.404 -1.526 4.256  "HO3'" YLA 55 
YLA "H4'"  "H4'"  H 0 1 N N N 41.422 129.551 -7.363  -2.695 -0.501 2.483  "H4'"  YLA 56 
YLA "H5'"  "H5'"  H 0 1 N N N 41.744 131.388 -9.123  -2.321 -2.925 1.874  "H5'"  YLA 57 
YLA "H5'A" "H5'A" H 0 0 N N N 43.203 130.444 -8.666  -3.093 -2.604 0.303  "H5'A" YLA 58 
YLA HAM    HAM    H 0 1 N N N 44.219 136.121 -7.785  5.859  0.272  0.560  HAM    YLA 59 
YLA HAMA   HAMA   H 0 0 N N N 44.985 134.840 -6.785  6.749  -1.162 -0.007 HAMA   YLA 60 
YLA HAN    HAN    H 0 1 N N N 46.535 134.492 -8.861  5.752  -0.890 -2.260 HAN    YLA 61 
YLA HANA   HANA   H 0 0 N N N 45.256 135.386 -9.751  4.862  0.543  -1.694 HANA   YLA 62 
YLA HAO    HAO    H 0 1 N N N 46.746 136.140 -6.325  7.913  0.229  -1.697 HAO    YLA 63 
YLA HAOA   HAOA   H 0 0 N N N 46.979 136.554 -8.058  7.023  1.663  -1.131 HAOA   YLA 64 
YLA HNAW   HNAW   H 0 0 N N N 45.678 138.188 -6.066  8.331  0.495  1.083  HNAW   YLA 65 
YLA HAI    HAI    H 0 1 N N N 45.087 130.656 -11.742 0.822  -3.281 1.706  HAI    YLA 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLA C     O      DOUB N N 1  
YLA C     CA     SING N N 2  
YLA C     OAY    SING N N 3  
YLA N     CA     SING N N 4  
YLA N1    C2     DOUB Y N 5  
YLA N1    C6     SING Y N 6  
YLA O1    C3     SING N N 7  
YLA O1    CBA    SING N N 8  
YLA C2    N3     SING Y N 9  
YLA C3    C7     SING N N 10 
YLA N3    C4     DOUB Y N 11 
YLA C4    C5     SING Y N 12 
YLA C4    N9     SING Y N 13 
YLA C5    C6     DOUB Y N 14 
YLA C5    N7     SING Y N 15 
YLA C6    N6     SING N N 16 
YLA C7    C9     TRIP N N 17 
YLA N7    C8     DOUB Y N 18 
YLA C8    N9     SING Y N 19 
YLA N9    "C1'"  SING N N 20 
YLA CA    CB     SING N N 21 
YLA CB    CAN    SING N N 22 
YLA "C1'" "C2'"  SING N N 23 
YLA "C1'" "O4'"  SING N N 24 
YLA "C2'" "O2'"  SING N N 25 
YLA "C2'" "C3'"  SING N N 26 
YLA "C3'" "O3'"  SING N N 27 
YLA "C3'" "C4'"  SING N N 28 
YLA "C4'" "O4'"  SING N N 29 
YLA "C4'" "C5'"  SING N N 30 
YLA "C5'" "O5'"  SING N N 31 
YLA "O5'" PBN    SING N N 32 
YLA OAD   CBA    DOUB N N 33 
YLA OAF   PBN    DOUB N N 34 
YLA OAI   PBN    SING N N 35 
YLA CAM   CAN    SING N N 36 
YLA CAM   CAO    SING N N 37 
YLA CAO   NAW    SING N N 38 
YLA NAW   CBA    SING N N 39 
YLA OAY   PBN    SING N N 40 
YLA N     HN     SING N N 41 
YLA N     HNA    SING N N 42 
YLA C2    H2     SING N N 43 
YLA C3    H3     SING N N 44 
YLA C3    H3A    SING N N 45 
YLA N6    HN6    SING N N 46 
YLA N6    HN6A   SING N N 47 
YLA C8    H8     SING N N 48 
YLA C9    H9     SING N N 49 
YLA CA    HA     SING N N 50 
YLA CB    HB     SING N N 51 
YLA CB    HBA    SING N N 52 
YLA "C1'" "H1'"  SING N N 53 
YLA "C2'" "H2'"  SING N N 54 
YLA "O2'" "HO2'" SING N N 55 
YLA "C3'" "H3'"  SING N N 56 
YLA "O3'" "HO3'" SING N N 57 
YLA "C4'" "H4'"  SING N N 58 
YLA "C5'" "H5'"  SING N N 59 
YLA "C5'" "H5'A" SING N N 60 
YLA CAM   HAM    SING N N 61 
YLA CAM   HAMA   SING N N 62 
YLA CAN   HAN    SING N N 63 
YLA CAN   HANA   SING N N 64 
YLA CAO   HAO    SING N N 65 
YLA CAO   HAOA   SING N N 66 
YLA NAW   HNAW   SING N N 67 
YLA OAI   HAI    SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLA SMILES           ACDLabs              12.01 "O=C(OCC#C)NCCCCC(N)C(=O)OP([O-])(=O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" 
YLA InChI            InChI                1.03  
"InChI=1S/C20H28N7O10P/c1-2-7-34-20(31)23-6-4-3-5-11(21)19(30)37-38(32,33)35-8-12-14(28)15(29)18(36-12)27-10-26-13-16(22)24-9-25-17(13)27/h1,9-12,14-15,18,28-29H,3-8,21H2,(H,23,31)(H,32,33)(H2,22,24,25)/p-1/t11-,12-,14-,15-,18-/m1/s1" 
YLA InChIKey         InChI                1.03  BXXVGWFYYCXKTG-AJKMGBEJSA-M 
YLA SMILES_CANONICAL CACTVS               3.385 "N[C@H](CCCCNC(=O)OCC#C)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 
YLA SMILES           CACTVS               3.385 "N[CH](CCCCNC(=O)OCC#C)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 
YLA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#CCOC(=O)NCCCC[C@H](C(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N" 
YLA SMILES           "OpenEye OEToolkits" 1.7.6 "C#CCOC(=O)NCCCCC(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YLA "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-({[(2R)-2-amino-6-{[(prop-2-yn-1-yloxy)carbonyl]amino}hexanoyl]oxy}phosphinato)adenosine"                                                        
YLA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2R)-2-azanyl-6-(prop-2-ynoxycarbonylamino)hexanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLA "Create component" 2013-11-28 EBI  
YLA "Initial release"  2014-03-19 RCSB 
# 
