data_YAA
# 
_chem_comp.id                                    YAA 
_chem_comp.name                                  "N-{(3P)-3-[(4P)-4-(2-acetamidopyridin-4-yl)-2-(methylsulfanyl)-1H-imidazol-5-yl]phenyl}-11-oxo-10,11-dihydro-5H-dibenzo[b,e][1,4]diazepine-9-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H25 N7 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-19 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        575.640 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YAA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FV4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YAA C10 C1  C 0 1 Y N N N N N 25.723 13.613 12.677 -1.639  -0.620 -1.609 C10 YAA 1  
YAA C11 C2  C 0 1 Y N N N N N 24.600 14.245 12.200 -0.275  -0.890 -1.483 C11 YAA 2  
YAA C02 C3  C 0 1 N N N N N N 29.658 7.112  13.759 -8.392  -1.052 1.865  C02 YAA 3  
YAA C03 C4  C 0 1 N N N N N N 30.531 5.940  14.198 -9.889  -0.886 1.894  C03 YAA 4  
YAA C05 C5  C 0 1 Y N N N N N 27.604 8.561  14.280 -6.268  -0.475 0.972  C05 YAA 5  
YAA C06 C6  C 0 1 Y N N N N N 27.705 9.363  13.148 -5.484  0.417  0.254  C06 YAA 6  
YAA C07 C7  C 0 1 Y N N N N N 26.812 10.412 13.043 -4.111  0.180  0.152  C07 YAA 7  
YAA C08 C8  C 0 1 Y N N N N N 26.784 11.313 11.831 -3.235  1.103  -0.603 C08 YAA 8  
YAA C09 C9  C 0 1 Y N N N N N 26.318 12.598 11.698 -2.148  0.745  -1.377 C09 YAA 9  
YAA C12 C10 C 0 1 Y N N N N N 23.959 15.232 12.927 0.196   -2.174 -1.709 C12 YAA 10 
YAA C14 C11 C 0 1 N N N N N N 21.861 16.763 12.747 2.297   -1.807 -0.655 C14 YAA 11 
YAA C15 C12 C 0 1 Y N N N N N 20.623 17.012 11.886 3.756   -2.013 -0.598 C15 YAA 12 
YAA C16 C13 C 0 1 Y N N N N N 20.622 17.852 10.750 4.522   -1.347 0.374  C16 YAA 13 
YAA C18 C14 C 0 1 N N N N N N 22.055 19.839 9.716  4.291   0.614  1.783  C18 YAA 14 
YAA C19 C15 C 0 1 Y N N N N N 20.920 20.803 9.271  5.544   1.290  1.428  C19 YAA 15 
YAA C20 C16 C 0 1 Y N N N N N 21.163 22.205 9.269  5.568   2.680  1.276  C20 YAA 16 
YAA C21 C17 C 0 1 Y N N N N N 20.166 23.079 8.834  6.751   3.321  0.980  C21 YAA 17 
YAA C22 C18 C 0 1 Y N N N N N 18.933 22.574 8.405  7.923   2.597  0.835  C22 YAA 18 
YAA C23 C19 C 0 1 Y N N N N N 18.685 21.204 8.402  7.914   1.223  0.967  C23 YAA 19 
YAA C24 C20 C 0 1 Y N N N N N 19.711 20.322 8.839  6.726   0.559  1.245  C24 YAA 20 
YAA C27 C21 C 0 1 Y N N N N N 19.474 18.010 10.001 5.900   -1.538 0.398  C27 YAA 21 
YAA C28 C22 C 0 1 Y N N N N N 18.276 17.340 10.361 6.499   -2.406 -0.501 C28 YAA 22 
YAA C29 C23 C 0 1 Y N N N N N 18.286 16.515 11.475 5.739   -3.071 -1.449 C29 YAA 23 
YAA C30 C24 C 0 1 Y N N N N N 19.450 16.345 12.230 4.377   -2.874 -1.506 C30 YAA 24 
YAA C32 C25 C 0 1 Y N N N N N 24.407 15.577 14.212 -0.689  -3.188 -2.059 C32 YAA 25 
YAA C33 C26 C 0 1 Y N N N N N 25.557 14.947 14.705 -2.040  -2.921 -2.184 C33 YAA 26 
YAA C34 C27 C 0 1 Y N N N N N 26.227 13.980 13.930 -2.520  -1.647 -1.962 C34 YAA 27 
YAA C36 C28 C 0 1 Y N N N N N 26.963 11.881 9.774  -2.407  2.938  -1.422 C36 YAA 28 
YAA C38 C29 C 0 1 N N N N N N 25.804 12.324 7.132  -3.542  5.358  -0.836 C38 YAA 29 
YAA C40 C30 C 0 1 Y N N N N N 25.847 10.579 14.026 -3.586  -0.955 0.785  C40 YAA 30 
YAA C41 C31 C 0 1 Y N N N N N 25.824 9.743  15.117 -4.434  -1.790 1.478  C41 YAA 31 
YAA N04 N1  N 0 1 N N N N N N 28.495 7.451  14.548 -7.640  -0.253 1.082  N04 YAA 32 
YAA N13 N2  N 0 1 N N N N N N 22.756 15.734 12.281 1.561   -2.450 -1.584 N13 YAA 33 
YAA N17 N3  N 0 1 N N N N N N 21.858 18.542 10.366 3.879   -0.549 1.306  N17 YAA 34 
YAA N25 N4  N 0 1 N N N N N N 19.453 18.882 8.834  6.703   -0.829 1.303  N25 YAA 35 
YAA N35 N5  N 0 1 Y N N N N N 26.438 12.916 10.424 -1.633  1.919  -1.890 N35 YAA 36 
YAA N39 N6  N 0 1 Y N N N N N 27.155 10.887 10.650 -3.357  2.444  -0.664 N39 YAA 37 
YAA N42 N7  N 0 1 Y N N N N N 26.693 8.768  15.216 -5.728  -1.538 1.549  N42 YAA 38 
YAA O01 O1  O 0 1 N N N N N N 29.931 7.735  12.808 -7.863  -1.906 2.545  O01 YAA 39 
YAA O26 O2  O 0 1 N N N N N N 23.165 20.175 9.508  3.569   1.172  2.586  O26 YAA 40 
YAA O31 O3  O 0 1 N N N N N N 22.071 17.347 13.765 1.757   -1.057 0.136  O31 YAA 41 
YAA S37 S1  S 0 1 N N N N N N 27.334 11.869 8.002  -2.173  4.647  -1.782 S37 YAA 42 
YAA H1  H1  H 0 1 N N N N N N 24.208 13.964 11.234 0.411   -0.101 -1.211 H1  YAA 43 
YAA H2  H2  H 0 1 N N N N N N 31.374 5.828  13.500 -10.340 -1.518 1.129  H2  YAA 44 
YAA H3  H3  H 0 1 N N N N N N 30.916 6.129  15.211 -10.268 -1.177 2.874  H3  YAA 45 
YAA H4  H4  H 0 1 N N N N N N 29.932 5.017  14.200 -10.143 0.156  1.701  H4  YAA 46 
YAA H5  H5  H 0 1 N N N N N N 28.447 9.174  12.386 -5.929  1.280  -0.220 H5  YAA 47 
YAA H6  H6  H 0 1 N N N N N N 22.115 22.591 9.603  4.658   3.251  1.390  H6  YAA 48 
YAA H7  H7  H 0 1 N N N N N N 20.345 24.144 8.828  6.765   4.394  0.860  H7  YAA 49 
YAA H8  H8  H 0 1 N N N N N N 18.164 23.256 8.072  8.849   3.110  0.618  H8  YAA 50 
YAA H9  H9  H 0 1 N N N N N N 17.731 20.818 8.074  8.831   0.664  0.855  H9  YAA 51 
YAA H10 H10 H 0 1 N N N N N N 17.375 17.470 9.779  7.567   -2.565 -0.463 H10 YAA 52 
YAA H11 H11 H 0 1 N N N N N N 17.383 15.997 11.763 6.215   -3.745 -2.146 H11 YAA 53 
YAA H12 H12 H 0 1 N N N N N N 19.440 15.690 13.089 3.788   -3.389 -2.251 H12 YAA 54 
YAA H13 H13 H 0 1 N N N N N N 23.879 16.309 14.805 -0.319  -4.187 -2.235 H13 YAA 55 
YAA H14 H14 H 0 1 N N N N N N 25.932 15.204 15.685 -2.722  -3.713 -2.457 H14 YAA 56 
YAA H15 H15 H 0 1 N N N N N N 27.131 13.521 14.303 -3.575  -1.442 -2.060 H15 YAA 57 
YAA H16 H16 H 0 1 N N N N N N 25.986 12.329 6.047  -4.486  4.953  -1.202 H16 YAA 58 
YAA H17 H17 H 0 1 N N N N N N 25.017 11.593 7.368  -3.424  5.107  0.218  H17 YAA 59 
YAA H18 H18 H 0 1 N N N N N N 25.483 13.326 7.454  -3.541  6.441  -0.954 H18 YAA 60 
YAA H19 H19 H 0 1 N N N N N N 25.113 11.366 13.934 -2.530  -1.172 0.729  H19 YAA 61 
YAA H20 H20 H 0 1 N N N N N N 25.088 9.890  15.894 -4.035  -2.666 1.968  H20 YAA 62 
YAA H21 H21 H 0 1 N N N N N N 28.290 6.875  15.339 -8.054  0.477  0.595  H21 YAA 63 
YAA H22 H22 H 0 1 N N N N N N 22.521 15.313 11.405 1.979   -3.104 -2.165 H22 YAA 64 
YAA H23 H23 H 0 1 N N N N N N 22.700 18.048 10.583 3.033   -0.879 1.646  H23 YAA 65 
YAA H24 H24 H 0 1 N N N N N N 19.244 18.459 7.952  7.235   -1.302 1.962  H24 YAA 66 
YAA H25 H25 H 0 1 N N N N N N 26.178 13.790 10.014 -0.861  2.004  -2.472 H25 YAA 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YAA C38 S37 SING N N 1  
YAA S37 C36 SING N N 2  
YAA C23 C22 DOUB Y N 3  
YAA C23 C24 SING Y N 4  
YAA C22 C21 SING Y N 5  
YAA N25 C24 SING N N 6  
YAA N25 C27 SING N N 7  
YAA C21 C20 DOUB Y N 8  
YAA C24 C19 DOUB Y N 9  
YAA C20 C19 SING Y N 10 
YAA C19 C18 SING N N 11 
YAA O26 C18 DOUB N N 12 
YAA C18 N17 SING N N 13 
YAA C36 N35 SING Y N 14 
YAA C36 N39 DOUB Y N 15 
YAA C27 C28 DOUB Y N 16 
YAA C27 C16 SING Y N 17 
YAA C28 C29 SING Y N 18 
YAA N17 C16 SING N N 19 
YAA N35 C09 SING Y N 20 
YAA N39 C08 SING Y N 21 
YAA C16 C15 DOUB Y N 22 
YAA C29 C30 DOUB Y N 23 
YAA C09 C08 DOUB Y N 24 
YAA C09 C10 SING N N 25 
YAA C08 C07 SING N N 26 
YAA C15 C30 SING Y N 27 
YAA C15 C14 SING N N 28 
YAA C11 C10 DOUB Y N 29 
YAA C11 C12 SING Y N 30 
YAA N13 C14 SING N N 31 
YAA N13 C12 SING N N 32 
YAA C10 C34 SING Y N 33 
YAA C14 O31 DOUB N N 34 
YAA O01 C02 DOUB N N 35 
YAA C12 C32 DOUB Y N 36 
YAA C07 C06 DOUB Y N 37 
YAA C07 C40 SING Y N 38 
YAA C06 C05 SING Y N 39 
YAA C02 C03 SING N N 40 
YAA C02 N04 SING N N 41 
YAA C34 C33 DOUB Y N 42 
YAA C40 C41 DOUB Y N 43 
YAA C32 C33 SING Y N 44 
YAA C05 N04 SING N N 45 
YAA C05 N42 DOUB Y N 46 
YAA C41 N42 SING Y N 47 
YAA C11 H1  SING N N 48 
YAA C03 H2  SING N N 49 
YAA C03 H3  SING N N 50 
YAA C03 H4  SING N N 51 
YAA C06 H5  SING N N 52 
YAA C20 H6  SING N N 53 
YAA C21 H7  SING N N 54 
YAA C22 H8  SING N N 55 
YAA C23 H9  SING N N 56 
YAA C28 H10 SING N N 57 
YAA C29 H11 SING N N 58 
YAA C30 H12 SING N N 59 
YAA C32 H13 SING N N 60 
YAA C33 H14 SING N N 61 
YAA C34 H15 SING N N 62 
YAA C38 H16 SING N N 63 
YAA C38 H17 SING N N 64 
YAA C38 H18 SING N N 65 
YAA C40 H19 SING N N 66 
YAA C41 H20 SING N N 67 
YAA N04 H21 SING N N 68 
YAA N13 H22 SING N N 69 
YAA N17 H23 SING N N 70 
YAA N25 H24 SING N N 71 
YAA N35 H25 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YAA SMILES           ACDLabs              12.01 "CC(=O)Nc1nccc(c1)c1nc(SC)[NH]c1c1cc(ccc1)NC(=O)c1cccc2Nc3ccccc3C(=O)Nc12"                                                                                                                                             
YAA InChI            InChI                1.06  "InChI=1S/C31H25N7O3S/c1-17(39)33-25-16-19(13-14-32-25)27-26(37-31(38-27)42-2)18-7-5-8-20(15-18)34-30(41)22-10-6-12-24-28(22)36-29(40)21-9-3-4-11-23(21)35-24/h3-16,35H,1-2H3,(H,34,41)(H,36,40)(H,37,38)(H,32,33,39)" 
YAA InChIKey         InChI                1.06  LYRJTYBPIGJFCT-UHFFFAOYSA-N                                                                                                                                                                                            
YAA SMILES_CANONICAL CACTVS               3.385 "CSc1[nH]c(c2cccc(NC(=O)c3cccc4Nc5ccccc5C(=O)Nc34)c2)c(n1)c6ccnc(NC(C)=O)c6"                                                                                                                                           
YAA SMILES           CACTVS               3.385 "CSc1[nH]c(c2cccc(NC(=O)c3cccc4Nc5ccccc5C(=O)Nc34)c2)c(n1)c6ccnc(NC(C)=O)c6"                                                                                                                                           
YAA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1cc(ccn1)c2c([nH]c(n2)SC)c3cccc(c3)NC(=O)c4cccc5c4NC(=O)c6ccccc6N5"                                                                                                                                           
YAA SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1cc(ccn1)c2c([nH]c(n2)SC)c3cccc(c3)NC(=O)c4cccc5c4NC(=O)c6ccccc6N5"                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YAA "SYSTEMATIC NAME" ACDLabs              12.01 "N-{(3P)-3-[(4P)-4-(2-acetamidopyridin-4-yl)-2-(methylsulfanyl)-1H-imidazol-5-yl]phenyl}-11-oxo-10,11-dihydro-5H-dibenzo[b,e][1,4]diazepine-9-carboxamide" 
YAA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-[4-(2-acetamidopyridin-4-yl)-2-methylsulfanyl-1~{H}-imidazol-5-yl]phenyl]-6-oxidanylidene-5,11-dihydrobenzo[b][1,4]benzodiazepine-4-carboxamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YAA "Create component" 2023-01-19 RCSB 
YAA "Initial release"  2024-01-17 RCSB 
# 
