data_Y7A
# 
_chem_comp.id                                    Y7A 
_chem_comp.name                                  "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]{2-(dimethylamino)-6-[(oxan-4-yl)methoxy]pyridin-4-yl}methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H33 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        519.595 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y7A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G70 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y7A C10 C1  C 0 1 N N N N N N -11.222 12.832 52.842 -5.206 1.854  0.101  C10 Y7A 1  
Y7A C13 C2  C 0 1 N N N N N N -11.010 11.425 50.757 -3.330 3.560  0.011  C13 Y7A 2  
Y7A C15 C3  C 0 1 N N S N N N -13.291 10.938 50.664 -1.570 2.129  0.554  C15 Y7A 3  
Y7A C16 C4  C 0 1 N N S N N N -12.085 11.241 49.715 -1.926 3.275  -0.476 C16 Y7A 4  
Y7A C17 C5  C 0 1 N N N N N N -12.131 10.111 48.719 -0.735 4.170  -0.206 C17 Y7A 5  
Y7A C19 C6  C 0 1 N N N N N N -14.421 10.454 49.743 -0.146 1.861  0.189  C19 Y7A 6  
Y7A C22 C7  C 0 1 N N N N N N -14.148 9.130  47.606 1.690  3.476  -0.476 C22 Y7A 7  
Y7A C23 C8  C 0 1 Y N N N N N -13.278 8.634  46.518 2.730  2.435  -0.301 C23 Y7A 8  
Y7A C25 C9  C 0 1 Y N N N N N -12.745 9.603  45.679 4.043  2.782  0.024  C25 Y7A 9  
Y7A C26 C10 C 0 1 Y N N N N N -12.017 9.168  44.542 4.988  1.775  0.179  C26 Y7A 10 
Y7A C28 C11 C 0 1 Y N N N N N -12.368 6.976  45.122 3.422  0.136  -0.284 C28 Y7A 11 
Y7A C1  C12 C 0 1 Y N N N N N -9.791  12.590 53.204 -5.612 0.435  0.152  C1  Y7A 12 
Y7A C2  C13 C 0 1 Y N N N N N -9.470  11.249 53.543 -6.803 0.072  0.797  C2  Y7A 13 
Y7A C3  C14 C 0 1 Y N N N N N -8.230  10.911 53.982 -7.192 -1.234 0.846  C3  Y7A 14 
Y7A C4  C15 C 0 1 Y N N N N N -8.886  13.624 53.276 -4.815 -0.535 -0.444 C4  Y7A 15 
Y7A C5  C16 C 0 1 Y N N N N N -7.606  13.297 53.744 -5.208 -1.875 -0.397 C5  Y7A 16 
Y7A C6  C17 C 0 1 Y N N N N N -7.275  11.955 54.095 -6.406 -2.220 0.255  C6  Y7A 17 
Y7A N7  N1  N 0 1 Y N N N N N -5.937  12.008 54.545 -6.523 -3.583 0.139  N7  Y7A 18 
Y7A N8  N2  N 0 1 Y N N N N N -5.529  13.289 54.453 -5.400 -4.024 -0.575 N8  Y7A 19 
Y7A N9  N3  N 0 1 Y N N N N N -6.471  14.073 53.999 -4.657 -3.017 -0.873 N9  Y7A 20 
Y7A O11 O1  O 0 1 N N N N N N -11.912 13.589 53.513 -6.050 2.724  0.006  O11 Y7A 21 
Y7A N12 N4  N 0 1 N N N N N N -11.788 12.239 51.731 -3.901 2.184  0.167  N12 Y7A 22 
Y7A C14 C18 C 0 1 N N N N N N -13.268 12.252 51.442 -2.766 1.245  0.408  C14 Y7A 23 
Y7A N18 N5  N 0 1 N N N N N N -13.606 9.874  48.616 0.402  3.197  -0.193 N18 Y7A 24 
Y7A O24 O2  O 0 1 N N N N N N -15.342 8.872  47.570 1.998  4.582  -0.875 O24 Y7A 25 
Y7A N27 N6  N 0 1 Y N N N N N -11.854 7.823  44.267 4.655  0.503  0.023  N27 Y7A 26 
Y7A C29 C19 C 0 1 Y N N N N N -13.097 7.278  46.295 2.420  1.080  -0.451 C29 Y7A 27 
Y7A O30 O3  O 0 1 N N N N N N -12.143 5.687  44.865 3.132  -1.181 -0.428 O30 Y7A 28 
Y7A C31 C20 C 0 1 N N N N N N -11.446 5.385  43.643 4.205  -2.106 -0.244 C31 Y7A 29 
Y7A C32 C21 C 0 1 N N N N N N -11.374 3.851  43.482 3.689  -3.533 -0.444 C32 Y7A 30 
Y7A C33 C22 C 0 1 N N N N N N -10.696 3.582  42.107 4.861  -4.516 -0.371 C33 Y7A 31 
Y7A C34 C23 C 0 1 N N N N N N -10.480 2.055  41.961 4.326  -5.945 -0.493 C34 Y7A 32 
Y7A O35 O4  O 0 1 N N N N N N -9.617  1.561  43.006 3.372  -6.186 0.543  O35 Y7A 33 
Y7A C36 C24 C 0 1 N N N N N N -10.090 1.818  44.331 2.231  -5.327 0.496  C36 Y7A 34 
Y7A C37 C25 C 0 1 N N N N N N -10.493 3.285  44.576 2.682  -3.873 0.659  C37 Y7A 35 
Y7A N38 N7  N 0 1 N N N N N N -11.399 10.097 43.649 6.299  2.107  0.503  N38 Y7A 36 
Y7A C39 C26 C 0 1 N N N N N N -12.158 11.369 43.433 6.653  3.500  0.785  C39 Y7A 37 
Y7A C40 C27 C 0 1 N N N N N N -10.789 9.567  42.418 7.326  1.064  0.562  C40 Y7A 38 
Y7A H46 H1  H 0 1 N N N N N N -10.139 11.970 50.363 -3.310 4.081  0.968  H46 Y7A 39 
Y7A H45 H2  H 0 1 N N N N N N -10.680 10.468 51.186 -3.888 4.133  -0.729 H45 Y7A 40 
Y7A H20 H3  H 0 1 N N N N N N -13.006 10.118 51.339 -1.596 2.565  1.553  H20 Y7A 41 
Y7A H21 H4  H 0 1 N N N N N N -12.268 12.196 49.200 -1.931 2.910  -1.503 H21 Y7A 42 
Y7A H50 H5  H 0 1 N N N N N N -11.702 10.409 47.751 -0.611 4.901  -1.005 H50 Y7A 43 
Y7A H49 H6  H 0 1 N N N N N N -11.605 9.221  49.095 -0.833 4.664  0.761  H49 Y7A 44 
Y7A H51 H7  H 0 1 N N N N N N -15.046 9.691  50.230 0.397  1.458  1.044  H51 Y7A 45 
Y7A H52 H8  H 0 1 N N N N N N -15.055 11.286 49.403 -0.093 1.171  -0.654 H52 Y7A 46 
Y7A H53 H9  H 0 1 N N N N N N -12.880 10.654 45.885 4.320  3.818  0.152  H53 Y7A 47 
Y7A H41 H10 H 0 1 N N N N N N -10.226 10.483 53.450 -7.417 0.832  1.257  H41 Y7A 48 
Y7A H42 H11 H 0 1 N N N N N N -7.981  9.891  54.234 -8.111 -1.504 1.345  H42 Y7A 49 
Y7A H43 H12 H 0 1 N N N N N N -9.147  14.631 52.988 -3.898 -0.254 -0.940 H43 Y7A 50 
Y7A H44 H13 H 0 1 N N N N N N -5.392  11.236 54.872 -7.243 -4.134 0.484  H44 Y7A 51 
Y7A H47 H14 H 0 1 N N N N N N -13.880 12.216 52.356 -2.641 0.573  -0.442 H47 Y7A 52 
Y7A H48 H15 H 0 1 N N N N N N -13.574 13.113 50.830 -2.931 0.675  1.322  H48 Y7A 53 
Y7A H54 H16 H 0 1 N N N N N N -13.480 6.518  46.960 1.414  0.773  -0.698 H54 Y7A 54 
Y7A H56 H17 H 0 1 N N N N N N -11.987 5.822  42.790 4.992  -1.899 -0.970 H56 Y7A 55 
Y7A H55 H18 H 0 1 N N N N N N -10.429 5.801  43.684 4.605  -2.003 0.765  H55 Y7A 56 
Y7A H57 H19 H 0 1 N N N N N N -12.380 3.407  43.511 3.207  -3.613 -1.418 H57 Y7A 57 
Y7A H59 H20 H 0 1 N N N N N N -11.344 3.945  41.296 5.556  -4.316 -1.186 H59 Y7A 58 
Y7A H58 H21 H 0 1 N N N N N N -9.727  4.101  42.062 5.375  -4.400 0.584  H58 Y7A 59 
Y7A H60 H22 H 0 1 N N N N N N -11.453 1.545  42.024 3.848  -6.073 -1.464 H60 Y7A 60 
Y7A H61 H23 H 0 1 N N N N N N -10.020 1.847  40.984 5.151  -6.652 -0.399 H61 Y7A 61 
Y7A H63 H24 H 0 1 N N N N N N -10.969 1.182  44.515 1.725  -5.446 -0.462 H63 Y7A 62 
Y7A H62 H25 H 0 1 N N N N N N -9.292  1.555  45.041 1.547  -5.587 1.304  H62 Y7A 63 
Y7A H65 H26 H 0 1 N N N N N N -9.579  3.893  44.639 3.152  -3.744 1.634  H65 Y7A 64 
Y7A H64 H27 H 0 1 N N N N N N -11.038 3.343  45.530 1.818  -3.213 0.579  H64 Y7A 65 
Y7A H68 H28 H 0 1 N N N N N N -11.604 12.013 42.735 6.533  3.697  1.850  H68 Y7A 66 
Y7A H66 H29 H 0 1 N N N N N N -13.148 11.138 43.012 7.689  3.677  0.497  H66 Y7A 67 
Y7A H67 H30 H 0 1 N N N N N N -12.281 11.890 44.394 6.000  4.163  0.217  H67 Y7A 68 
Y7A H71 H31 H 0 1 N N N N N N -10.357 10.395 41.837 7.788  0.954  -0.419 H71 Y7A 69 
Y7A H70 H32 H 0 1 N N N N N N -9.997  8.851  42.681 8.085  1.342  1.292  H70 Y7A 70 
Y7A H69 H33 H 0 1 N N N N N N -11.558 9.059  41.817 6.868  0.119  0.856  H69 Y7A 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y7A C1  C2  DOUB Y N 1  
Y7A C1  C4  SING Y N 2  
Y7A C1  C10 SING N N 3  
Y7A C2  C3  SING Y N 4  
Y7A C3  C6  DOUB Y N 5  
Y7A C4  C5  DOUB Y N 6  
Y7A C5  C6  SING Y N 7  
Y7A C5  N9  SING Y N 8  
Y7A C6  N7  SING Y N 9  
Y7A N7  N8  SING Y N 10 
Y7A N8  N9  DOUB Y N 11 
Y7A C10 O11 DOUB N N 12 
Y7A C10 N12 SING N N 13 
Y7A N12 C13 SING N N 14 
Y7A N12 C14 SING N N 15 
Y7A C13 C16 SING N N 16 
Y7A C14 C15 SING N N 17 
Y7A C15 C16 SING N N 18 
Y7A C15 C19 SING N N 19 
Y7A C16 C17 SING N N 20 
Y7A C17 N18 SING N N 21 
Y7A N18 C19 SING N N 22 
Y7A N18 C22 SING N N 23 
Y7A C22 C23 SING N N 24 
Y7A C22 O24 DOUB N N 25 
Y7A C23 C25 DOUB Y N 26 
Y7A C23 C29 SING Y N 27 
Y7A C25 C26 SING Y N 28 
Y7A C26 N27 DOUB Y N 29 
Y7A C26 N38 SING N N 30 
Y7A N27 C28 SING Y N 31 
Y7A C28 C29 DOUB Y N 32 
Y7A C28 O30 SING N N 33 
Y7A O30 C31 SING N N 34 
Y7A C31 C32 SING N N 35 
Y7A C32 C33 SING N N 36 
Y7A C32 C37 SING N N 37 
Y7A C33 C34 SING N N 38 
Y7A C34 O35 SING N N 39 
Y7A O35 C36 SING N N 40 
Y7A C36 C37 SING N N 41 
Y7A N38 C39 SING N N 42 
Y7A N38 C40 SING N N 43 
Y7A C13 H46 SING N N 44 
Y7A C13 H45 SING N N 45 
Y7A C15 H20 SING N N 46 
Y7A C16 H21 SING N N 47 
Y7A C17 H50 SING N N 48 
Y7A C17 H49 SING N N 49 
Y7A C19 H51 SING N N 50 
Y7A C19 H52 SING N N 51 
Y7A C25 H53 SING N N 52 
Y7A C2  H41 SING N N 53 
Y7A C3  H42 SING N N 54 
Y7A C4  H43 SING N N 55 
Y7A N7  H44 SING N N 56 
Y7A C14 H47 SING N N 57 
Y7A C14 H48 SING N N 58 
Y7A C29 H54 SING N N 59 
Y7A C31 H56 SING N N 60 
Y7A C31 H55 SING N N 61 
Y7A C32 H57 SING N N 62 
Y7A C33 H59 SING N N 63 
Y7A C33 H58 SING N N 64 
Y7A C34 H60 SING N N 65 
Y7A C34 H61 SING N N 66 
Y7A C36 H63 SING N N 67 
Y7A C36 H62 SING N N 68 
Y7A C37 H65 SING N N 69 
Y7A C37 H64 SING N N 70 
Y7A C39 H68 SING N N 71 
Y7A C39 H66 SING N N 72 
Y7A C39 H67 SING N N 73 
Y7A C40 H71 SING N N 74 
Y7A C40 H70 SING N N 75 
Y7A C40 H69 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y7A SMILES           ACDLabs              12.01 "O=C(c1ccc2[NH]nnc2c1)N1CC2CN(CC2C1)C(=O)c1cc(OCC2CCOCC2)nc(c1)N(C)C"                                                                                                                                
Y7A InChI            InChI                1.06  "InChI=1S/C27H33N7O4/c1-32(2)24-10-19(11-25(28-24)38-16-17-5-7-37-8-6-17)27(36)34-14-20-12-33(13-21(20)15-34)26(35)18-3-4-22-23(9-18)30-31-29-22/h3-4,9-11,17,20-21H,5-8,12-16H2,1-2H3,(H,29,30,31)" 
Y7A InChIKey         InChI                1.06  XTVNPWUYIUFOIQ-UHFFFAOYSA-N                                                                                                                                                                          
Y7A SMILES_CANONICAL CACTVS               3.385 "CN(C)c1cc(cc(OCC2CCOCC2)n1)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                                       
Y7A SMILES           CACTVS               3.385 "CN(C)c1cc(cc(OCC2CCOCC2)n1)C(=O)N3C[CH]4CN(C[CH]4C3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                                          
Y7A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1cc(cc(n1)OCC2CCOCC2)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6c(c5)nn[nH]6"                                                                                                                     
Y7A SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)c1cc(cc(n1)OCC2CCOCC2)C(=O)N3CC4CN(CC4C3)C(=O)c5ccc6c(c5)nn[nH]6"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y7A "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]{2-(dimethylamino)-6-[(oxan-4-yl)methoxy]pyridin-4-yl}methanone"                                 
Y7A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},6~{a}~{S})-5-[2-(dimethylamino)-6-(oxan-4-ylmethoxy)pyridin-4-yl]carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-(1~{H}-benzotriazol-5-yl)methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y7A "Create component" 2023-06-12 RCSB 
Y7A "Initial release"  2024-12-18 RCSB 
# 
