data_Y2A
#

_chem_comp.id                                   Y2A
_chem_comp.name                                 "(2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C6 H9 O10 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-28
_chem_comp.pdbx_modified_date                   2021-05-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       272.103
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y2A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LIW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y2A  CA   C1   C  0  1  N  N  N  87.319  106.253  128.557   2.828  -0.962  -0.740  CA   Y2A   1  
Y2A  CB   C2   C  0  1  N  N  S  87.896  105.657  127.274   1.553  -0.442  -0.074  CB   Y2A   2  
Y2A  OB1  O1   O  0  1  N  N  N  88.256  106.536  125.071   1.488   1.718   0.865  OB1  Y2A   3  
Y2A  OB2  O2   O  0  1  N  N  N  88.740  107.855  126.737   1.541   1.676  -1.344  OB2  Y2A   4  
Y2A  CG   C3   C  0  1  N  N  N  89.134  104.821  127.576   0.331  -1.012  -0.798  CG   Y2A   5  
Y2A  OG1  O3   O  0  1  N  N  N  90.550  106.333  128.675  -0.846   0.401   0.675  OG1  Y2A   6  
Y2A  OG2  O4   O  0  1  N  N  N  90.083  104.519  129.907  -2.123  -0.759  -0.706  OG2  Y2A   7  
Y2A  CAC  C4   C  0  1  N  N  N  85.815  106.478  128.529   4.032  -0.401  -0.027  CAC  Y2A   8  
Y2A  CBC  C5   C  0  1  N  N  N  88.320  106.752  126.307   1.525   1.063  -0.149  CBC  Y2A   9  
Y2A  CGC  C6   C  0  1  N  N  N  89.974  105.304  128.754  -0.922  -0.404  -0.222  CGC  Y2A  10  
Y2A  O1   O5   O  0  1  N  N  N  91.739  105.269  131.753  -4.738  -0.516  -0.836  O1   Y2A  11  
Y2A  O3   O6   O  0  1  N  N  N  89.589  104.395  132.422  -3.532  -0.523   1.501  O3   Y2A  12  
Y2A  O4   O7   O  0  1  N  N  N  89.667  106.581  131.438  -3.274   1.406  -0.106  O4   Y2A  13  
Y2A  OA1  O8   O  0  1  N  N  N  85.153  106.140  127.521   3.884   0.339   0.917  OA1  Y2A  14  
Y2A  OA2  O9   O  0  1  N  N  N  85.243  107.009  129.514   5.267  -0.723  -0.440  OA2  Y2A  15  
Y2A  OHB  O10  O  0  1  N  N  N  86.929  104.858  126.662   1.529  -0.851   1.295  OHB  Y2A  16  
Y2A  P    P1   P  0  1  N  N  N  90.283  105.216  131.386  -3.414  -0.066  -0.038  P    Y2A  17  
Y2A  H1   H1   H  0  1  N  N  N  87.548  105.568  129.387   2.849  -2.050  -0.686  H1   Y2A  18  
Y2A  H2   H2   H  0  1  N  N  N  87.808  107.222  128.735   2.847  -0.650  -1.784  H2   Y2A  19  
Y2A  H3   H3   H  0  1  N  N  N  88.968  108.415  126.004   1.521   2.643  -1.341  H3   Y2A  20  
Y2A  H4   H4   H  0  1  N  N  N  88.806  103.793  127.791   0.395  -0.775  -1.860  H4   Y2A  21  
Y2A  H5   H5   H  0  1  N  N  N  89.772  104.823  126.680   0.304  -2.093  -0.668  H5   Y2A  22  
Y2A  H6   H6   H  0  1  N  N  N  91.985  106.166  131.948  -5.556  -0.135  -0.487  H6   Y2A  23  
Y2A  H7   H7   H  0  1  N  N  N  88.933  104.925  132.860  -3.627  -1.478   1.621  H7   Y2A  24  
Y2A  H8   H8   H  0  1  N  N  N  84.313  107.084  129.338   6.008  -0.339   0.048  H8   Y2A  25  
Y2A  H9   H9   H  0  1  N  N  N  86.064  105.191  126.870   1.545  -1.810   1.419  H9   Y2A  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y2A  OB1  CBC  DOUB  N  N   1  
Y2A  CBC  OB2  SING  N  N   2  
Y2A  CBC  CB   SING  N  N   3  
Y2A  OHB  CB   SING  N  N   4  
Y2A  CB   CG   SING  N  N   5  
Y2A  CB   CA   SING  N  N   6  
Y2A  OA1  CAC  DOUB  N  N   7  
Y2A  CG   CGC  SING  N  N   8  
Y2A  CAC  CA   SING  N  N   9  
Y2A  CAC  OA2  SING  N  N  10  
Y2A  OG1  CGC  DOUB  N  N  11  
Y2A  CGC  OG2  SING  N  N  12  
Y2A  OG2  P    SING  N  N  13  
Y2A  P    O4   DOUB  N  N  14  
Y2A  P    O1   SING  N  N  15  
Y2A  P    O3   SING  N  N  16  
Y2A  CA   H1   SING  N  N  17  
Y2A  CA   H2   SING  N  N  18  
Y2A  OB2  H3   SING  N  N  19  
Y2A  CG   H4   SING  N  N  20  
Y2A  CG   H5   SING  N  N  21  
Y2A  O1   H6   SING  N  N  22  
Y2A  O3   H7   SING  N  N  23  
Y2A  OA2  H8   SING  N  N  24  
Y2A  OHB  H9   SING  N  N  25  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y2A  SMILES            ACDLabs               12.01  "C(C(CC(=O)OP(O)(O)=O)(C(=O)O)O)C(O)=O"  
Y2A  InChI             InChI                 1.03   "InChI=1S/C6H9O10P/c7-3(8)1-6(12,5(10)11)2-4(9)16-17(13,14)15/h12H,1-2H2,(H,7,8)(H,10,11)(H2,13,14,15)/t6-/m0/s1"  
Y2A  InChIKey          InChI                 1.03   RAAPFOXFYNTKEB-LURJTMIESA-N  
Y2A  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)C[C@](O)(CC(=O)O[P](O)(O)=O)C(O)=O"  
Y2A  SMILES            CACTVS                3.385  "OC(=O)C[C](O)(CC(=O)O[P](O)(O)=O)C(O)=O"  
Y2A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C(C(=O)O)[C@](CC(=O)OP(=O)(O)O)(C(=O)O)O"  
Y2A  SMILES            "OpenEye OEToolkits"  2.0.7  "C(C(=O)O)C(CC(=O)OP(=O)(O)O)(C(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y2A  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic acid"  
Y2A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-oxidanyl-2-(2-oxidanylidene-2-phosphonooxy-ethyl)butanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y2A  "Create component"  2021-01-28  RCSB  
Y2A  "Initial release"   2021-05-19  RCSB  
##
