data_XWA
# 
_chem_comp.id                                    XWA 
_chem_comp.name                                  "1-(2,4-dimethoxyphenyl)-3-(2,6-dimethylphenyl)-1-[6-[[4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]urea" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H37 N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-14 
_chem_comp.pdbx_modified_date                    2024-03-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        567.681 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XWA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R4V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
XWA C1  C1  C 0 1 Y N N -10.410 -61.452 -6.541 4.650   5.732  -0.528 C1  XWA 1  N N N 
XWA C2  C2  C 0 1 Y N N -10.148 -60.429 -5.666 3.947   5.503  0.641  C2  XWA 2  N N N 
XWA C3  C3  C 0 1 Y N N -9.387  -62.008 -7.285 4.715   4.752  -1.502 C3  XWA 3  N N N 
XWA C7  C4  C 0 1 Y N N 1.644   -59.026 -6.418 -4.091  0.023  -1.911 C7  XWA 4  N N N 
XWA C8  C5  C 0 1 Y N N -2.752  -61.569 -3.961 3.635   -2.089 -1.276 C8  XWA 5  N N N 
XWA C9  C6  C 0 1 Y N N -2.073  -61.755 -2.788 4.346   -3.270 -1.368 C9  XWA 6  N N N 
XWA C10 C7  C 0 1 Y N N -3.173  -59.840 -1.774 4.778   -3.200 0.995  C10 XWA 7  N N N 
XWA C11 C8  C 0 1 Y N N -2.390  -59.164 -6.027 0.498   -0.427 -0.747 C11 XWA 8  N N N 
XWA C12 C9  C 0 1 Y N N -3.677  -58.622 -8.292 -0.344  -0.199 1.792  C12 XWA 9  N N N 
XWA C13 C10 C 0 1 Y N N -8.851  -59.965 -5.539 3.313   4.293  0.842  C13 XWA 10 N N N 
XWA C14 C11 C 0 1 Y N N -8.087  -61.558 -7.165 4.077   3.542  -1.309 C14 XWA 11 N N N 
XWA C15 C12 C 0 1 Y N N 2.279   -59.330 -4.086 -5.861  -0.738 -0.482 C15 XWA 12 N N N 
XWA C16 C13 C 0 1 Y N N 0.464   -58.453 -5.991 -3.167  -0.648 -1.120 C16 XWA 13 N N N 
XWA C19 C14 C 0 1 Y N N -2.284  -60.896 -1.728 4.918   -3.828 -0.234 C19 XWA 14 N N N 
XWA C20 C15 C 0 1 Y N N -3.866  -59.658 -2.956 4.076   -2.010 1.088  C20 XWA 15 N N N 
XWA C21 C16 C 0 1 Y N N -1.773  -58.467 -7.038 -0.859  -0.456 -0.439 C21 XWA 16 N N N 
XWA C22 C17 C 0 1 Y N N -3.700  -59.563 -6.231 1.407   -0.282 0.296  C22 XWA 17 N N N 
XWA C24 C18 C 0 1 N N N 4.488   -60.092 -3.680 -8.018  -0.013 -1.126 C24 XWA 18 N N N 
XWA C27 C19 C 0 1 N N N 3.961   -61.548 -1.692 -8.941  -0.448 1.550  C27 XWA 19 N N N 
XWA C30 C20 C 0 1 N N N 6.203   -61.489 -0.984 -9.454  1.760  0.697  C30 XWA 20 N N N 
XWA C31 C21 C 0 1 N N N -0.506  -60.189 -0.620 5.721   -5.582 -1.623 C31 XWA 21 N N N 
XWA C32 C22 C 0 1 N N N -4.919  -57.855 -1.964 4.541   -2.029 3.420  C32 XWA 22 N N N 
XWA C4  C23 C 0 1 Y N N 1.097   -58.745 -3.691 -4.937  -1.408 0.309  C4  XWA 23 N N N 
XWA C5  C24 C 0 1 Y N N 2.533   -59.457 -5.441 -5.434  -0.022 -1.593 C5  XWA 24 N N N 
XWA C6  C25 C 0 1 Y N N 0.205   -58.313 -4.643 -3.594  -1.363 -0.009 C6  XWA 25 N N N 
XWA C17 C26 C 0 1 Y N N -3.645  -60.508 -4.020 3.497   -1.455 -0.051 C17 XWA 26 N N N 
XWA C18 C27 C 0 1 Y N N -7.828  -60.531 -6.281 3.381   3.305  -0.131 C18 XWA 27 N N N 
XWA C23 C28 C 0 1 N N N -5.721  -60.615 -5.206 3.407   0.926  -0.116 C23 XWA 28 N N N 
XWA C25 C29 C 0 1 N N N 2.740   -60.753 -2.143 -7.456  -0.307 1.210  C25 XWA 29 N N N 
XWA C26 C30 C 0 1 N N N 5.549   -59.985 -2.603 -9.503  -0.154 -0.786 C26 XWA 30 N N N 
XWA C28 C31 C 0 1 N N N -8.613  -58.848 -4.564 2.548   4.045  2.117  C28 XWA 31 N N N 
XWA C29 C32 C 0 1 N N N -7.008  -62.185 -7.995 4.148   2.475  -2.371 C29 XWA 32 N N N 
XWA N33 N1  N 0 1 Y N N -2.414  -58.203 -8.174 -1.236  -0.339 0.833  N33 XWA 33 N N N 
XWA N34 N2  N 0 1 Y N N -4.356  -59.279 -7.362 0.950   -0.172 1.541  N34 XWA 34 N N N 
XWA N35 N3  N 0 1 N N N 3.208   -59.744 -3.077 -7.222  -0.784 -0.161 N35 XWA 35 N N N 
XWA N36 N4  N 0 1 N N N 5.085   -60.657 -1.399 -9.737  0.323  0.584  N36 XWA 36 N N N 
XWA N37 N5  N 0 1 N N N -0.442  -58.000 -6.924 -1.805  -0.603 -1.442 N37 XWA 37 N N N 
XWA N38 N6  N 0 1 N N N -6.507  -60.065 -6.174 2.735   2.080  0.067  N38 XWA 38 N N N 
XWA N39 N7  N 0 1 N N N -4.374  -60.275 -5.201 2.775   -0.254 0.042  N39 XWA 39 N N N 
XWA O40 O1  O 0 1 N N N -6.196  -61.380 -4.388 4.583   0.950  -0.423 O40 XWA 40 N N N 
XWA O41 O2  O 0 1 N N N -1.583  -61.106 -0.564 5.617   -4.990 -0.327 O41 XWA 41 N N N 
XWA O42 O3  O 0 1 N N N -4.797  -58.625 -3.153 3.937   -1.394 2.292  O42 XWA 42 N N N 
XWA H1  H1  H 0 1 N N N -11.418 -61.824 -6.649 5.145   6.679  -0.683 H1  XWA 43 N N N 
XWA H2  H2  H 0 1 N N N -10.945 -59.991 -5.083 3.895   6.272  1.398  H2  XWA 44 N N N 
XWA H3  H3  H 0 1 N N N -9.608  -62.810 -7.974 5.264   4.933  -2.414 H3  XWA 45 N N N 
XWA H4  H4  H 0 1 N N N 1.868   -59.135 -7.469 -3.758  0.583  -2.772 H4  XWA 46 N N N 
XWA H5  H5  H 0 1 N N N -2.599  -62.222 -4.808 3.191   -1.656 -2.161 H5  XWA 47 N N N 
XWA H6  H6  H 0 1 N N N -1.373  -62.572 -2.691 4.457   -3.761 -2.324 H6  XWA 48 N N N 
XWA H7  H7  H 0 1 N N N -3.320  -59.187 -0.926 5.223   -3.635 1.878  H7  XWA 49 N N N 
XWA H8  H8  H 0 1 N N N -1.872  -59.392 -5.107 0.837   -0.518 -1.768 H8  XWA 50 N N N 
XWA H9  H9  H 0 1 N N N -4.186  -58.408 -9.220 -0.682  -0.106 2.813  H9  XWA 51 N N N 
XWA H10 H10 H 0 1 N N N 4.452   -61.120 -4.069 -7.837  -0.393 -2.132 H10 XWA 52 N N N 
XWA H11 H11 H 0 1 N N N 4.717   -59.397 -4.501 -7.731  1.038  -1.077 H11 XWA 53 N N N 
XWA H12 H12 H 0 1 N N N 3.706   -62.116 -0.785 -9.228  -1.498 1.500  H12 XWA 54 N N N 
XWA H13 H13 H 0 1 N N N 4.253   -62.245 -2.492 -9.122  -0.068 2.555  H13 XWA 55 N N N 
XWA H14 H14 H 0 1 N N N 5.933   -62.038 -0.070 -8.397  1.939  0.501  H14 XWA 56 N N N 
XWA H15 H15 H 0 1 N N N 6.444   -62.205 -1.784 -10.056 2.307  -0.029 H15 XWA 57 N N N 
XWA H16 H16 H 0 1 N N N 7.079   -60.854 -0.785 -9.700  2.101  1.703  H16 XWA 58 N N N 
XWA H17 H17 H 0 1 N N N 0.112   -60.292 0.284  6.302   -6.502 -1.557 H17 XWA 59 N N N 
XWA H18 H18 H 0 1 N N N 0.107   -60.398 -1.509 4.724   -5.809 -2.001 H18 XWA 60 N N N 
XWA H19 H19 H 0 1 N N N -0.900  -59.164 -0.679 6.217   -4.888 -2.301 H19 XWA 61 N N N 
XWA H20 H20 H 0 1 N N N -5.649  -57.047 -2.123 4.114   -3.023 3.549  H20 XWA 62 N N N 
XWA H21 H21 H 0 1 N N N -5.261  -58.501 -1.142 5.616   -2.114 3.257  H21 XWA 63 N N N 
XWA H22 H22 H 0 1 N N N -3.942  -57.420 -1.707 4.356   -1.435 4.315  H22 XWA 64 N N N 
XWA H23 H23 H 0 1 N N N 0.873   -58.627 -2.641 -5.269  -1.965 1.173  H23 XWA 65 N N N 
XWA H24 H24 H 0 1 N N N 3.462   -59.911 -5.752 -6.152  0.500  -2.208 H24 XWA 66 N N N 
XWA H25 H25 H 0 1 N N N -0.720  -57.853 -4.329 -2.876  -1.885 0.606  H25 XWA 67 N N N 
XWA H26 H26 H 0 1 N N N 2.262   -60.272 -1.277 -7.163  0.740  1.286  H26 XWA 68 N N N 
XWA H27 H27 H 0 1 N N N 2.018   -61.419 -2.638 -6.865  -0.901 1.908  H27 XWA 69 N N N 
XWA H28 H28 H 0 1 N N N 6.477   -60.460 -2.954 -10.094 0.441  -1.484 H28 XWA 70 N N N 
XWA H29 H29 H 0 1 N N N 5.741   -58.925 -2.381 -9.796  -1.201 -0.862 H29 XWA 71 N N N 
XWA H30 H30 H 0 1 N N N -8.724  -57.882 -5.078 1.533   4.429  2.012  H30 XWA 72 N N N 
XWA H31 H31 H 0 1 N N N -9.345  -58.914 -3.745 2.513   2.974  2.316  H31 XWA 73 N N N 
XWA H32 H32 H 0 1 N N N -7.596  -58.930 -4.154 3.046   4.552  2.944  H32 XWA 74 N N N 
XWA H33 H33 H 0 1 N N N -6.918  -61.645 -8.949 4.903   1.738  -2.096 H33 XWA 75 N N N 
XWA H34 H34 H 0 1 N N N -6.052  -62.134 -7.453 3.178   1.986  -2.460 H34 XWA 76 N N N 
XWA H35 H35 H 0 1 N N N -7.262  -63.237 -8.192 4.415   2.929  -3.325 H35 XWA 77 N N N 
XWA H37 H37 H 0 1 N N N -0.139  -57.294 -7.564 -1.523  -0.675 -2.368 H37 XWA 78 N N N 
XWA H38 H38 H 0 1 N N N -6.156  -59.356 -6.786 1.803   2.061  0.336  H38 XWA 79 N N N 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XWA C12 N33 DOUB Y N 1  
XWA C12 N34 SING Y N 2  
XWA N33 C21 SING Y N 3  
XWA C29 C14 SING N N 4  
XWA N34 C22 DOUB Y N 5  
XWA C3  C14 DOUB Y N 6  
XWA C3  C1  SING Y N 7  
XWA C14 C18 SING Y N 8  
XWA C21 N37 SING N N 9  
XWA C21 C11 DOUB Y N 10 
XWA N37 C16 SING N N 11 
XWA C1  C2  DOUB Y N 12 
XWA C7  C16 DOUB Y N 13 
XWA C7  C5  SING Y N 14 
XWA C18 N38 SING N N 15 
XWA C18 C13 DOUB Y N 16 
XWA C22 C11 SING Y N 17 
XWA C22 N39 SING N N 18 
XWA N38 C23 SING N N 19 
XWA C16 C6  SING Y N 20 
XWA C2  C13 SING Y N 21 
XWA C13 C28 SING N N 22 
XWA C5  C15 DOUB Y N 23 
XWA C23 N39 SING N N 24 
XWA C23 O40 DOUB N N 25 
XWA N39 C17 SING N N 26 
XWA C6  C4  DOUB Y N 27 
XWA C15 C4  SING Y N 28 
XWA C15 N35 SING N N 29 
XWA C17 C8  DOUB Y N 30 
XWA C17 C20 SING Y N 31 
XWA C8  C9  SING Y N 32 
XWA C24 N35 SING N N 33 
XWA C24 C26 SING N N 34 
XWA O42 C20 SING N N 35 
XWA O42 C32 SING N N 36 
XWA N35 C25 SING N N 37 
XWA C20 C10 DOUB Y N 38 
XWA C9  C19 DOUB Y N 39 
XWA C26 N36 SING N N 40 
XWA C25 C27 SING N N 41 
XWA C10 C19 SING Y N 42 
XWA C19 O41 SING N N 43 
XWA C27 N36 SING N N 44 
XWA N36 C30 SING N N 45 
XWA C31 O41 SING N N 46 
XWA C1  H1  SING N N 47 
XWA C2  H2  SING N N 48 
XWA C3  H3  SING N N 49 
XWA C7  H4  SING N N 50 
XWA C8  H5  SING N N 51 
XWA C9  H6  SING N N 52 
XWA C10 H7  SING N N 53 
XWA C11 H8  SING N N 54 
XWA C12 H9  SING N N 55 
XWA C24 H10 SING N N 56 
XWA C24 H11 SING N N 57 
XWA C27 H12 SING N N 58 
XWA C27 H13 SING N N 59 
XWA C30 H14 SING N N 60 
XWA C30 H15 SING N N 61 
XWA C30 H16 SING N N 62 
XWA C31 H17 SING N N 63 
XWA C31 H18 SING N N 64 
XWA C31 H19 SING N N 65 
XWA C32 H20 SING N N 66 
XWA C32 H21 SING N N 67 
XWA C32 H22 SING N N 68 
XWA C4  H23 SING N N 69 
XWA C5  H24 SING N N 70 
XWA C6  H25 SING N N 71 
XWA C25 H26 SING N N 72 
XWA C25 H27 SING N N 73 
XWA C26 H28 SING N N 74 
XWA C26 H29 SING N N 75 
XWA C28 H30 SING N N 76 
XWA C28 H31 SING N N 77 
XWA C28 H32 SING N N 78 
XWA C29 H33 SING N N 79 
XWA C29 H34 SING N N 80 
XWA C29 H35 SING N N 81 
XWA N37 H37 SING N N 82 
XWA N38 H38 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XWA InChI            InChI                1.06  "InChI=1S/C32H37N7O3/c1-22-7-6-8-23(2)31(22)36-32(40)39(27-14-13-26(41-4)19-28(27)42-5)30-20-29(33-21-34-30)35-24-9-11-25(12-10-24)38-17-15-37(3)16-18-38/h6-14,19-21H,15-18H2,1-5H3,(H,36,40)(H,33,34,35)" 
XWA InChIKey         InChI                1.06  UYUHRKLITDJEHB-UHFFFAOYSA-N                                                                                                                                                                                 
XWA SMILES_CANONICAL CACTVS               3.385 "COc1ccc(N(C(=O)Nc2c(C)cccc2C)c3cc(Nc4ccc(cc4)N5CCN(C)CC5)ncn3)c(OC)c1"                                                                                                                                     
XWA SMILES           CACTVS               3.385 "COc1ccc(N(C(=O)Nc2c(C)cccc2C)c3cc(Nc4ccc(cc4)N5CCN(C)CC5)ncn3)c(OC)c1"                                                                                                                                     
XWA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(c1NC(=O)N(c2ccc(cc2OC)OC)c3cc(ncn3)Nc4ccc(cc4)N5CCN(CC5)C)C"                                                                                                                                       
XWA SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cccc(c1NC(=O)N(c2ccc(cc2OC)OC)c3cc(ncn3)Nc4ccc(cc4)N5CCN(CC5)C)C"                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           XWA 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-(2,4-dimethoxyphenyl)-3-(2,6-dimethylphenyl)-1-[6-[[4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]urea" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XWA "Create component" 2023-11-14 PDBE 
XWA "Initial release"  2024-03-27 RCSB 
# 
