data_XNA
# 
_chem_comp.id                                    XNA 
_chem_comp.name                                  "N~8~-(cyclopropylmethyl)-N~4~-(2-methylphenyl)-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H26 N8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-01-12 
_chem_comp.pdbx_modified_date                    2012-01-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        390.485 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XNA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3QA2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XNA C01  C01  C 0 1 N N N -3.116  -1.207 15.150 -4.215 3.505  0.950  C01  XNA 1  
XNA C02  C02  C 0 1 Y N N -3.559  0.101  15.815 -4.456 2.138  0.365  C02  XNA 2  
XNA C03  C03  C 0 1 Y N N -3.699  1.320  15.064 -5.732 1.612  0.336  C03  XNA 3  
XNA C04  C04  C 0 1 Y N N -4.137  2.528  15.713 -5.953 0.357  -0.201 C04  XNA 4  
XNA C05  C05  C 0 1 Y N N -4.445  2.552  17.124 -4.898 -0.376 -0.710 C05  XNA 5  
XNA C06  C06  C 0 1 Y N N -4.299  1.339  17.891 -3.618 0.143  -0.685 C06  XNA 6  
XNA C07  C07  C 0 1 Y N N -3.858  0.134  17.235 -3.393 1.406  -0.152 C07  XNA 7  
XNA N08  N08  N 0 1 N N N -3.689  -1.089 17.994 -2.101 1.938  -0.131 N08  XNA 8  
XNA C09  C09  C 0 1 Y N N -4.716  -1.448 18.963 -1.010 1.096  -0.042 C09  XNA 9  
XNA N10  N10  N 0 1 Y N N -5.690  -0.561 19.416 -1.169 -0.206 0.143  N10  XNA 10 
XNA C11  C11  C 0 1 Y N N -6.599  -1.030 20.362 -0.126 -1.027 0.230  C11  XNA 11 
XNA N12  N12  N 0 1 Y N N -6.578  -2.332 20.881 1.122  -0.606 0.140  N12  XNA 12 
XNA C13  C13  C 0 1 Y N N -5.592  -3.193 20.409 1.384  0.691  -0.046 C13  XNA 13 
XNA C14  C14  C 0 1 Y N N -5.473  -4.580 20.873 2.702  1.200  -0.150 C14  XNA 14 
XNA N15  N15  N 0 1 Y N N -4.504  -5.402 20.409 2.855  2.503  -0.335 N15  XNA 15 
XNA C16  C16  C 0 1 Y N N -3.609  -4.913 19.459 1.815  3.317  -0.421 C16  XNA 16 
XNA N17  N17  N 0 1 Y N N -3.624  -3.639 18.946 0.574  2.898  -0.332 N17  XNA 17 
XNA C18  C18  C 0 1 Y N N -4.610  -2.824 19.434 0.310  1.602  -0.151 C18  XNA 18 
XNA N19  N19  N 0 1 N N N -6.428  -5.056 21.883 3.796  0.361  -0.061 N19  XNA 19 
XNA C20  C20  C 0 1 N N N -6.297  -6.434 22.359 5.150  0.909  -0.171 C20  XNA 20 
XNA C21  C21  C 0 1 N N N -7.426  -7.243 21.697 6.170  -0.223 -0.039 C21  XNA 21 
XNA C22  C22  C 0 1 N N N -8.334  -7.953 22.703 7.121  -0.181 1.159  C22  XNA 22 
XNA C23  C23  C 0 1 N N N -7.336  -8.762 21.859 7.645  0.129  -0.244 C23  XNA 23 
XNA N24  N24  N 0 1 N N N -7.668  -0.133 20.915 -0.359 -2.378 0.423  N24  XNA 24 
XNA C25  C25  C 0 1 N N N -7.712  1.270  20.642 0.276  -3.178 -0.634 C25  XNA 25 
XNA C26  C26  C 0 1 N N N -9.170  1.604  20.256 0.063  -4.665 -0.342 C26  XNA 26 
XNA N27  N27  N 0 1 N N N -10.108 1.227  21.405 -1.377 -4.946 -0.266 N27  XNA 27 
XNA C28  C28  C 0 1 N N N -9.936  -0.261 21.731 -2.012 -4.146 0.791  C28  XNA 28 
XNA C29  C29  C 0 1 N N N -8.452  -0.557 22.039 -1.799 -2.658 0.499  C29  XNA 29 
XNA H01  H01  H 0 1 N N N -2.020  -1.287 15.191 -4.316 4.258  0.168  H01  XNA 30 
XNA H01A H01A H 0 0 N N N -3.565  -2.059 15.681 -4.946 3.698  1.736  H01A XNA 31 
XNA H01B H01B H 0 0 N N N -3.445  -1.214 14.100 -3.211 3.550  1.370  H01B XNA 32 
XNA H03  H03  H 0 1 N N N -3.474  1.329  14.008 -6.559 2.182  0.734  H03  XNA 33 
XNA H04  H04  H 0 1 N N N -4.237  3.434  15.134 -6.953 -0.052 -0.221 H04  XNA 34 
XNA H05  H05  H 0 1 N N N -4.779  3.463  17.597 -5.074 -1.356 -1.129 H05  XNA 35 
XNA H06  H06  H 0 1 N N N -4.518  1.334  18.948 -2.794 -0.430 -1.083 H06  XNA 36 
XNA HN08 HN08 H 0 0 N N N -2.888  -1.672 17.856 -1.970 2.898  -0.178 HN08 XNA 37 
XNA H16  H16  H 0 1 N N N -2.846  -5.587 19.099 1.995  4.371  -0.572 H16  XNA 38 
XNA HN19 HN19 H 0 0 N N N -6.320  -4.464 22.682 3.667  -0.591 0.075  HN19 XNA 39 
XNA H20  H20  H 0 1 N N N -5.316  -6.845 22.078 5.268  1.394  -1.140 H20  XNA 40 
XNA H20A H20A H 0 0 N N N -6.391  -6.471 23.454 5.312  1.639  0.622  H20A XNA 41 
XNA H21  H21  H 0 1 N N N -7.569  -6.572 20.837 5.834  -1.201 -0.381 H21  XNA 42 
XNA H22  H22  H 0 1 N N N -8.431  -7.839 23.793 7.019  0.653  1.854  H22  XNA 43 
XNA H22A H22A H 0 0 N N N -9.430  -8.007 22.772 7.409  -1.132 1.606  H22A XNA 44 
XNA H23  H23  H 0 1 N N N -7.496  -9.575 21.136 8.279  -0.619 -0.721 H23  XNA 45 
XNA H23A H23A H 0 0 N N N -6.496  -9.407 22.156 7.888  1.166  -0.473 H23A XNA 46 
XNA H25  H25  H 0 1 N N N -7.410  1.843  21.531 -0.171 -2.929 -1.597 H25  XNA 47 
XNA H25A H25A H 0 0 N N N -7.030  1.521  19.816 1.344  -2.961 -0.662 H25A XNA 48 
XNA H26  H26  H 0 1 N N N -9.256  2.682  20.053 0.508  -5.260 -1.139 H26  XNA 49 
XNA H26A H26A H 0 0 N N N -9.449  1.036  19.356 0.534  -4.920 0.608  H26A XNA 50 
XNA HN27 HN27 H 0 0 N N N -9.885  1.774  22.212 -1.824 -4.787 -1.156 HN27 XNA 51 
XNA H28  H28  H 0 1 N N N -10.549 -0.516 22.608 -3.080 -4.362 0.819  H28  XNA 52 
XNA H28A H28A H 0 0 N N N -10.258 -0.864 20.869 -1.565 -4.394 1.754  H28A XNA 53 
XNA H29  H29  H 0 1 N N N -8.312  -1.635 22.208 -2.244 -2.064 1.296  H29  XNA 54 
XNA H29A H29A H 0 0 N N N -8.140  -0.009 22.941 -2.270 -2.404 -0.451 H29A XNA 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XNA C01 C02  SING N N 1  
XNA C01 H01  SING N N 2  
XNA C01 H01A SING N N 3  
XNA C01 H01B SING N N 4  
XNA C03 C02  DOUB Y N 5  
XNA C02 C07  SING Y N 6  
XNA C03 C04  SING Y N 7  
XNA C03 H03  SING N N 8  
XNA C04 C05  DOUB Y N 9  
XNA C04 H04  SING N N 10 
XNA C05 C06  SING Y N 11 
XNA C05 H05  SING N N 12 
XNA C07 C06  DOUB Y N 13 
XNA C06 H06  SING N N 14 
XNA C07 N08  SING N N 15 
XNA N08 C09  SING N N 16 
XNA N08 HN08 SING N N 17 
XNA C09 N10  DOUB Y N 18 
XNA C09 C18  SING Y N 19 
XNA N10 C11  SING Y N 20 
XNA C11 N12  DOUB Y N 21 
XNA C11 N24  SING N N 22 
XNA C13 N12  SING Y N 23 
XNA C18 C13  DOUB Y N 24 
XNA C13 C14  SING Y N 25 
XNA N15 C14  DOUB Y N 26 
XNA C14 N19  SING N N 27 
XNA C16 N15  SING Y N 28 
XNA N17 C16  DOUB Y N 29 
XNA C16 H16  SING N N 30 
XNA N17 C18  SING Y N 31 
XNA N19 C20  SING N N 32 
XNA N19 HN19 SING N N 33 
XNA C21 C20  SING N N 34 
XNA C20 H20  SING N N 35 
XNA C20 H20A SING N N 36 
XNA C21 C23  SING N N 37 
XNA C21 C22  SING N N 38 
XNA C21 H21  SING N N 39 
XNA C23 C22  SING N N 40 
XNA C22 H22  SING N N 41 
XNA C22 H22A SING N N 42 
XNA C23 H23  SING N N 43 
XNA C23 H23A SING N N 44 
XNA C25 N24  SING N N 45 
XNA N24 C29  SING N N 46 
XNA C26 C25  SING N N 47 
XNA C25 H25  SING N N 48 
XNA C25 H25A SING N N 49 
XNA C26 N27  SING N N 50 
XNA C26 H26  SING N N 51 
XNA C26 H26A SING N N 52 
XNA N27 C28  SING N N 53 
XNA N27 HN27 SING N N 54 
XNA C28 C29  SING N N 55 
XNA C28 H28  SING N N 56 
XNA C28 H28A SING N N 57 
XNA C29 H29  SING N N 58 
XNA C29 H29A SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XNA SMILES           ACDLabs              12.01 "n3c(Nc1ccccc1C)c5ncnc(NCC2CC2)c5nc3N4CCNCC4"                                                                                                                        
XNA SMILES_CANONICAL CACTVS               3.370 "Cc1ccccc1Nc2nc(nc3c(NCC4CC4)ncnc23)N5CCNCC5"                                                                                                                        
XNA SMILES           CACTVS               3.370 "Cc1ccccc1Nc2nc(nc3c(NCC4CC4)ncnc23)N5CCNCC5"                                                                                                                        
XNA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CCNCC5"                                                                                                                      
XNA SMILES           "OpenEye OEToolkits" 1.7.0 "Cc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CCNCC5"                                                                                                                      
XNA InChI            InChI                1.03  "InChI=1S/C21H26N8/c1-14-4-2-3-5-16(14)26-20-17-18(19(25-13-24-17)23-12-15-6-7-15)27-21(28-20)29-10-8-22-9-11-29/h2-5,13,15,22H,6-12H2,1H3,(H,23,24,25)(H,26,27,28)" 
XNA InChIKey         InChI                1.03  YOLJYZUKAHEMMW-UHFFFAOYSA-N                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XNA "SYSTEMATIC NAME" ACDLabs              12.01 "N~8~-(cyclopropylmethyl)-N~4~-(2-methylphenyl)-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine" 
XNA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N4-(cyclopropylmethyl)-N8-(2-methylphenyl)-6-piperazin-1-yl-pyrimido[5,4-d]pyrimidine-4,8-diamine"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XNA "Create component"     2011-01-12 RCSB 
XNA "Modify aromatic_flag" 2011-06-04 RCSB 
XNA "Modify descriptor"    2011-06-04 RCSB 
# 
