data_XJA
#

_chem_comp.id                                   XJA
_chem_comp.name                                 "(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H49 O13 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-17
_chem_comp.pdbx_modified_date                   2021-09-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       600.633
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XJA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L2I
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XJA  C10  C1   C  0  1  N  N  N  108.164  139.785  117.653  -4.639  -0.000   4.791  C10  XJA   1  
XJA  O11  O1   O  0  1  N  N  N  105.196  136.315  127.944  -4.152   2.711  -2.745  O11  XJA   2  
XJA  C16  C2   C  0  1  N  N  N  107.268  135.945  115.609   7.300   0.336  -0.273  C16  XJA   3  
XJA  C17  C3   C  0  1  N  N  N  107.132  135.600  114.133   8.704  -0.233  -0.057  C17  XJA   4  
XJA  C18  C4   C  0  1  N  N  N  106.946  136.847  113.277   9.723   0.908  -0.062  C18  XJA   5  
XJA  C19  C5   C  0  1  N  N  N  106.937  136.475  111.802  11.127   0.340   0.154  C19  XJA   6  
XJA  C20  C6   C  0  1  N  N  N  106.875  137.669  110.858  12.146   1.481   0.149  C20  XJA   7  
XJA  C21  C7   C  0  1  N  N  N  106.952  137.210  109.407  13.549   0.912   0.366  C21  XJA   8  
XJA  C    C8   C  0  1  N  N  N  103.481  137.820  129.508  -5.646   3.286   0.654  C    XJA   9  
XJA  O    O2   O  0  1  N  N  N  104.331  137.028  130.294  -5.099   3.816   1.863  O    XJA  10  
XJA  C1   C9   C  0  1  N  N  R  102.400  136.916  128.921  -6.129   1.854   0.898  C1   XJA  11  
XJA  C11  C10  C  0  1  N  N  N  104.355  133.652  119.892   1.451  -1.933  -0.690  C11  XJA  12  
XJA  C12  C11  C  0  1  N  N  N  105.328  133.154  118.828   2.454  -0.809  -0.695  C12  XJA  13  
XJA  C13  C12  C  0  1  N  N  N  105.863  134.278  117.949   3.858  -1.378  -0.479  C13  XJA  14  
XJA  C14  C13  C  0  1  N  N  N  106.841  133.780  116.892   4.877  -0.237  -0.484  C14  XJA  15  
XJA  C15  C14  C  0  1  N  N  N  107.863  134.826  116.458   6.281  -0.805  -0.268  C15  XJA  16  
XJA  C2   C15  C  0  1  N  N  S  102.128  137.224  127.446  -6.715   1.286  -0.396  C2   XJA  17  
XJA  C22  C16  C  0  1  N  N  N  106.503  138.286  108.432  14.568   2.053   0.360  C22  XJA  18  
XJA  C23  C17  C  0  1  N  N  N  107.371  139.534  108.529  15.972   1.485   0.577  C23  XJA  19  
XJA  C24  C18  C  0  1  N  N  R  104.651  137.458  127.336  -5.157   2.714  -1.729  C24  XJA  20  
XJA  C25  C19  C  0  1  N  N  R  104.327  138.477  128.418  -4.571   3.282  -0.434  C25  XJA  21  
XJA  C3   C20  C  0  1  N  N  N  103.381  137.048  126.593  -5.639   1.283  -1.484  C3   XJA  22  
XJA  C4   C21  C  0  1  N  N  N  104.613  134.118  122.949  -1.967  -2.500  -1.743  C4   XJA  23  
XJA  C5   C22  C  0  1  N  N  S  105.461  134.627  121.793  -0.764  -2.800  -0.847  C5   XJA  24  
XJA  C6   C23  C  0  1  N  N  N  106.062  135.994  122.118  -1.242  -3.049   0.585  C6   XJA  25  
XJA  C7   C24  C  0  1  N  N  N  107.005  137.623  120.628  -2.529  -1.977   2.280  C7   XJA  26  
XJA  C8   C25  C  0  1  N  N  N  107.699  137.946  119.323  -3.357  -0.837   2.816  C8   XJA  27  
XJA  C9   C26  C  0  1  N  N  N  107.509  139.413  118.979  -3.798  -1.157   4.246  C9   XJA  28  
XJA  O1   O3   O  0  1  N  N  N  101.231  137.131  129.652  -7.134   1.857   1.914  O1   XJA  29  
XJA  O10  O4   O  0  1  N  N  N  103.332  133.096  120.050   1.820  -3.072  -0.530  O10  XJA  30  
XJA  O12  O5   O  0  1  N  N  N  105.529  138.962  128.974  -3.470   2.474  -0.014  O12  XJA  31  
XJA  O2   O6   O  0  1  N  N  N  101.166  136.350  126.924  -7.166  -0.051  -0.168  O2   XJA  32  
XJA  O3   O7   O  0  1  N  N  N  103.456  135.699  126.277  -4.539   0.474  -1.064  O3   XJA  33  
XJA  O4   O8   O  0  1  N  N  N  102.344  134.045  124.740  -5.198  -1.947  -1.850  O4   XJA  34  
XJA  O5   O9   O  0  1  N  N  N  102.344  136.413  124.080  -3.755  -0.448  -3.279  O5   XJA  35  
XJA  O6   O10  O  0  1  N  N  N  104.551  135.086  123.945  -2.710  -1.410  -1.193  O6   XJA  36  
XJA  O7   O11  O  0  1  N  N  N  106.955  136.307  121.086  -2.031  -1.916   1.035  O7   XJA  37  
XJA  O8   O12  O  0  1  N  N  N  106.531  138.509  121.233  -2.314  -2.944   2.970  O8   XJA  38  
XJA  O9   O13  O  0  1  N  N  N  104.643  134.777  120.666   0.146  -1.669  -0.863  O9   XJA  39  
XJA  P    P1   P  0  1  N  N  N  103.134  135.309  124.732  -4.044  -0.824  -1.877  P    XJA  40  
XJA  H1   H1   H  0  1  N  N  N  107.999  140.853  117.449  -4.045   0.914   4.789  H1   XJA  41  
XJA  H2   H2   H  0  1  N  N  N  109.244  139.585  117.709  -5.518   0.138   4.161  H2   XJA  42  
XJA  H3   H3   H  0  1  N  N  N  107.721  139.185  116.844  -4.953  -0.228   5.809  H3   XJA  43  
XJA  H4   H4   H  0  1  N  N  N  105.988  136.552  128.412  -3.800   3.587  -2.952  H4   XJA  44  
XJA  H5   H5   H  0  1  N  N  N  107.917  136.829  115.699   7.065   1.037   0.528  H5   XJA  45  
XJA  H6   H6   H  0  1  N  N  N  106.268  136.182  116.002   7.261   0.853  -1.232  H6   XJA  46  
XJA  H7   H7   H  0  1  N  N  N  106.260  134.943  113.999   8.743  -0.750   0.902  H7   XJA  47  
XJA  H8   H8   H  0  1  N  N  N  108.041  135.075  113.805   8.939  -0.934  -0.858  H8   XJA  48  
XJA  H9   H9   H  0  1  N  N  N  107.772  137.547  113.470   9.684   1.426  -1.020  H9   XJA  49  
XJA  H10  H10  H  0  1  N  N  N  105.991  137.327  113.537   9.487   1.609   0.739  H10  XJA  50  
XJA  H11  H11  H  0  1  N  N  N  106.060  135.839  111.612  11.165  -0.178   1.113  H11  XJA  51  
XJA  H12  H12  H  0  1  N  N  N  107.855  135.909  111.583  11.362  -0.361  -0.646  H12  XJA  52  
XJA  H13  H13  H  0  1  N  N  N  107.719  138.341  111.070  12.107   1.998  -0.809  H13  XJA  53  
XJA  H14  H14  H  0  1  N  N  N  105.929  138.207  111.017  11.910   2.182   0.950  H14  XJA  54  
XJA  H15  H15  H  0  1  N  N  N  106.307  136.328  109.281  13.588   0.395   1.324  H15  XJA  55  
XJA  H16  H16  H  0  1  N  N  N  107.993  136.938  109.178  13.785   0.211  -0.435  H16  XJA  56  
XJA  H17  H17  H  0  1  N  N  N  103.004  138.604  130.115  -6.486   3.902   0.333  H17  XJA  57  
XJA  H18  H18  H  0  1  N  N  N  103.827  136.608  130.981  -4.773   4.723   1.782  H18  XJA  58  
XJA  H19  H19  H  0  1  N  N  N  102.726  135.869  129.010  -5.290   1.237   1.219  H19  XJA  59  
XJA  H20  H20  H  0  1  N  N  N  104.808  132.425  118.189   2.416  -0.292  -1.654  H20  XJA  60  
XJA  H21  H21  H  0  1  N  N  N  106.176  132.664  119.328   2.219  -0.108   0.106  H21  XJA  61  
XJA  H22  H22  H  0  1  N  N  N  106.378  135.010  118.588   3.897  -1.895   0.480  H22  XJA  62  
XJA  H23  H23  H  0  1  N  N  N  105.015  134.764  117.444   4.094  -2.079  -1.280  H23  XJA  63  
XJA  H24  H24  H  0  1  N  N  N  106.267  133.468  116.007   4.839   0.281  -1.443  H24  XJA  64  
XJA  H25  H25  H  0  1  N  N  N  107.383  132.914  117.301   4.642   0.464   0.317  H25  XJA  65  
XJA  H26  H26  H  0  1  N  N  N  108.647  134.324  115.872   6.516  -1.506  -1.069  H26  XJA  66  
XJA  H27  H27  H  0  1  N  N  N  108.308  135.272  117.359   6.320  -1.323   0.691  H27  XJA  67  
XJA  H28  H28  H  0  1  N  N  N  101.787  138.266  127.361  -7.554   1.903  -0.717  H28  XJA  68  
XJA  H29  H29  H  0  1  N  N  N  105.461  138.558  108.657  14.530   2.571  -0.598  H29  XJA  69  
XJA  H30  H30  H  0  1  N  N  N  106.565  137.888  107.409  14.333   2.754   1.161  H30  XJA  70  
XJA  H31  H31  H  0  1  N  N  N  107.014  140.286  107.810  16.011   0.967   1.535  H31  XJA  71  
XJA  H32  H32  H  0  1  N  N  N  107.311  139.944  109.548  16.208   0.784  -0.224  H32  XJA  72  
XJA  H33  H33  H  0  1  N  N  N  108.415  139.273  108.300  16.698   2.298   0.573  H33  XJA  73  
XJA  H34  H34  H  0  1  N  N  N  105.361  137.900  126.622  -5.996   3.331  -2.049  H34  XJA  74  
XJA  H35  H35  H  0  1  N  N  N  103.751  139.301  127.971  -4.227   4.302  -0.608  H35  XJA  75  
XJA  H36  H36  H  0  1  N  N  N  103.285  137.661  125.684  -6.057   0.878  -2.406  H36  XJA  76  
XJA  H37  H37  H  0  1  N  N  N  103.597  133.898  122.589  -1.620  -2.236  -2.741  H37  XJA  77  
XJA  H38  H38  H  0  1  N  N  N  105.063  133.201  123.357  -2.605  -3.382  -1.801  H38  XJA  78  
XJA  H39  H39  H  0  1  N  N  N  106.274  133.912  121.597  -0.248  -3.687  -1.217  H39  XJA  79  
XJA  H40  H40  H  0  1  N  N  N  106.596  135.953  123.079  -1.854  -3.951   0.612  H40  XJA  80  
XJA  H41  H41  H  0  1  N  N  N  105.267  136.752  122.172  -0.380  -3.175   1.240  H41  XJA  81  
XJA  H42  H42  H  0  1  N  N  N  107.272  137.326  118.521  -2.763   0.076   2.815  H42  XJA  82  
XJA  H43  H43  H  0  1  N  N  N  108.774  137.731  119.420  -4.237  -0.700   2.187  H43  XJA  83  
XJA  H44  H44  H  0  1  N  N  N  107.954  140.024  119.778  -2.919  -1.294   4.875  H44  XJA  84  
XJA  H45  H45  H  0  1  N  N  N  106.432  139.624  118.913  -4.393  -2.070   4.247  H45  XJA  85  
XJA  H46  H46  H  0  1  N  N  N  101.391  136.942  130.569  -6.832   2.206   2.765  H46  XJA  86  
XJA  H47  H47  H  0  1  N  N  N  105.331  139.599  129.650  -3.049   2.776   0.802  H47  XJA  87  
XJA  H48  H48  H  0  1  N  N  N  100.363  136.425  127.427  -7.850  -0.124   0.511  H48  XJA  88  
XJA  H49  H49  H  0  1  N  N  N  101.500  134.196  124.330  -5.439  -2.241  -0.961  H49  XJA  89  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XJA  C22  C23  SING  N  N   1  
XJA  C22  C21  SING  N  N   2  
XJA  C21  C20  SING  N  N   3  
XJA  C20  C19  SING  N  N   4  
XJA  C19  C18  SING  N  N   5  
XJA  C18  C17  SING  N  N   6  
XJA  C17  C16  SING  N  N   7  
XJA  C16  C15  SING  N  N   8  
XJA  C15  C14  SING  N  N   9  
XJA  C14  C13  SING  N  N  10  
XJA  C10  C9   SING  N  N  11  
XJA  C13  C12  SING  N  N  12  
XJA  C12  C11  SING  N  N  13  
XJA  C9   C8   SING  N  N  14  
XJA  C8   C7   SING  N  N  15  
XJA  C11  O10  DOUB  N  N  16  
XJA  C11  O9   SING  N  N  17  
XJA  C7   O7   SING  N  N  18  
XJA  C7   O8   DOUB  N  N  19  
XJA  O9   C5   SING  N  N  20  
XJA  O7   C6   SING  N  N  21  
XJA  C5   C6   SING  N  N  22  
XJA  C5   C4   SING  N  N  23  
XJA  C4   O6   SING  N  N  24  
XJA  O6   P    SING  N  N  25  
XJA  O5   P    DOUB  N  N  26  
XJA  P    O4   SING  N  N  27  
XJA  P    O3   SING  N  N  28  
XJA  O3   C3   SING  N  N  29  
XJA  C3   C24  SING  N  N  30  
XJA  C3   C2   SING  N  N  31  
XJA  O2   C2   SING  N  N  32  
XJA  C24  O11  SING  N  N  33  
XJA  C24  C25  SING  N  N  34  
XJA  C2   C1   SING  N  N  35  
XJA  C25  O12  SING  N  N  36  
XJA  C25  C    SING  N  N  37  
XJA  C1   C    SING  N  N  38  
XJA  C1   O1   SING  N  N  39  
XJA  C    O    SING  N  N  40  
XJA  C10  H1   SING  N  N  41  
XJA  C10  H2   SING  N  N  42  
XJA  C10  H3   SING  N  N  43  
XJA  O11  H4   SING  N  N  44  
XJA  C16  H5   SING  N  N  45  
XJA  C16  H6   SING  N  N  46  
XJA  C17  H7   SING  N  N  47  
XJA  C17  H8   SING  N  N  48  
XJA  C18  H9   SING  N  N  49  
XJA  C18  H10  SING  N  N  50  
XJA  C19  H11  SING  N  N  51  
XJA  C19  H12  SING  N  N  52  
XJA  C20  H13  SING  N  N  53  
XJA  C20  H14  SING  N  N  54  
XJA  C21  H15  SING  N  N  55  
XJA  C21  H16  SING  N  N  56  
XJA  C    H17  SING  N  N  57  
XJA  O    H18  SING  N  N  58  
XJA  C1   H19  SING  N  N  59  
XJA  C12  H20  SING  N  N  60  
XJA  C12  H21  SING  N  N  61  
XJA  C13  H22  SING  N  N  62  
XJA  C13  H23  SING  N  N  63  
XJA  C14  H24  SING  N  N  64  
XJA  C14  H25  SING  N  N  65  
XJA  C15  H26  SING  N  N  66  
XJA  C15  H27  SING  N  N  67  
XJA  C2   H28  SING  N  N  68  
XJA  C22  H29  SING  N  N  69  
XJA  C22  H30  SING  N  N  70  
XJA  C23  H31  SING  N  N  71  
XJA  C23  H32  SING  N  N  72  
XJA  C23  H33  SING  N  N  73  
XJA  C24  H34  SING  N  N  74  
XJA  C25  H35  SING  N  N  75  
XJA  C3   H36  SING  N  N  76  
XJA  C4   H37  SING  N  N  77  
XJA  C4   H38  SING  N  N  78  
XJA  C5   H39  SING  N  N  79  
XJA  C6   H40  SING  N  N  80  
XJA  C6   H41  SING  N  N  81  
XJA  C8   H42  SING  N  N  82  
XJA  C8   H43  SING  N  N  83  
XJA  C9   H44  SING  N  N  84  
XJA  C9   H45  SING  N  N  85  
XJA  O1   H46  SING  N  N  86  
XJA  O12  H47  SING  N  N  87  
XJA  O2   H48  SING  N  N  88  
XJA  O4   H49  SING  N  N  89  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XJA  SMILES            ACDLabs               12.01  "CCCC(OCC(COP(OC1C(C(C(O)C(C1O)O)O)O)(O)=O)OC(=O)CCCCCCCCCCCC)=O"  
XJA  InChI             InChI                 1.03   "InChI=1S/C26H49O13P/c1-3-5-6-7-8-9-10-11-12-13-15-20(28)38-18(16-36-19(27)14-4-2)17-37-40(34,35)39-26-24(32)22(30)21(29)23(31)25(26)33/h18,21-26,29-33H,3-17H2,1-2H3,(H,34,35)/t18-,21-,22+,23+,24+,25-,26+/m0/s1"  
XJA  InChIKey          InChI                 1.03   PJDJYKJPFGJDMA-STSOKTRESA-N  
XJA  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCC)CO[P](O)(=O)O[C@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)[C@H]1O"  
XJA  SMILES            CACTVS                3.385  "CCCCCCCCCCCCC(=O)O[CH](COC(=O)CCC)CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O"  
XJA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCC)COP(=O)(O)OC1[C@@H]([C@@H](C([C@H]([C@@H]1O)O)O)O)O"  
XJA  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCC(=O)OC(COC(=O)CCC)COP(=O)(O)OC1C(C(C(C(C1O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XJA  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate"  
XJA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{S})-1-butanoyloxy-3-[oxidanyl-[(2~{S},3~{R},5~{R},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] tridecanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XJA  "Create component"  2020-12-17  RCSB  
XJA  "Initial release"   2021-09-22  RCSB  
##
