data_X4A
# 
_chem_comp.id                                    X4A 
_chem_comp.name                                  "[(2R,3S,5S)-2,3,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN PHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C5 H11 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-07-27 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        230.110 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     X4A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X4A OP3    O3P  O 0 1 N Y N 0.041  7.789  16.522 2.712  0.951  -1.441 OP3    X4A 1  
X4A P      P    P 0 1 N N N -0.739 8.959  17.368 2.686  0.108  -0.070 P      X4A 2  
X4A OP1    O1P  O 0 1 N N N -0.442 8.765  18.817 2.997  -1.310 -0.357 OP1    X4A 3  
X4A OP2    O2P  O 0 1 N N N -0.521 10.251 16.746 3.784  0.703  0.947  OP2    X4A 4  
X4A "O5'"  O5*  O 0 1 N N N -2.258 8.585  17.091 1.225  0.213  0.597  "O5'"  X4A 5  
X4A "C5'"  C5*  C 0 1 N N N -2.971 7.567  17.801 0.315  -0.434 -0.296 "C5'"  X4A 6  
X4A "C4'"  C4*  C 0 1 N N R -4.287 7.449  17.118 -1.100 -0.369 0.282  "C4'"  X4A 7  
X4A O4A    O4A  O 0 1 N N N -5.017 8.593  17.248 -1.131 -1.008 1.560  O4A    X4A 8  
X4A "O4'"  O4*  O 0 1 N N N -4.127 7.152  15.772 -1.511 0.999  0.411  "O4'"  X4A 9  
X4A "C1'"  C1*  C 0 1 N N S -4.291 5.754  15.614 -2.660 1.244  -0.415 "C1'"  X4A 10 
X4A O1A    O1A  O 0 1 N N N -4.680 5.402  14.328 -3.554 2.150  0.234  O1A    X4A 11 
X4A "C3'"  C3*  C 0 1 N N S -5.123 6.227  17.778 -2.089 -1.066 -0.677 "C3'"  X4A 12 
X4A "C2'"  C2*  C 0 1 N N N -5.507 5.423  16.505 -3.334 -0.140 -0.596 "C2'"  X4A 13 
X4A "O3'"  O3*  O 0 1 N N N -6.357 6.578  18.452 -2.404 -2.382 -0.220 "O3'"  X4A 14 
X4A HOP3   3HOP H 0 0 N N N 0.192  8.088  15.633 2.505  1.867  -1.210 HOP3   X4A 15 
X4A HOP2   2HOP H 0 0 N N N -0.473 10.922 17.417 4.643  0.621  0.510  HOP2   X4A 16 
X4A "H5'"  1H5* H 0 1 N N N -3.088 7.821  18.865 0.609  -1.476 -0.422 "H5'"  X4A 17 
X4A "H5''" 2H5* H 0 0 N N N -2.426 6.612  17.766 0.336  0.069  -1.263 "H5''" X4A 18 
X4A H4A    H4A  H 0 1 N N N -5.187 8.758  18.168 -0.499 -0.540 2.122  H4A    X4A 19 
X4A "H1'"  H1*  H 0 1 N N N -3.347 5.240  15.849 -2.353 1.644  -1.382 "H1'"  X4A 20 
X4A H1A    H1A  H 0 1 N N N -5.626 5.322  14.294 -3.077 2.985  0.340  H1A    X4A 21 
X4A "H3'"  H3*  H 0 1 N N N -4.525 5.736  18.559 -1.692 -1.093 -1.691 "H3'"  X4A 22 
X4A "H2'"  1H2* H 0 1 N N N -5.682 4.350  16.670 -3.954 -0.390 0.265  "H2'"  X4A 23 
X4A "H2''" 2H2* H 0 0 N N N -6.461 5.748  16.065 -3.912 -0.178 -1.519 "H2''" X4A 24 
X4A "HO3'" H3T  H 0 0 N Y N -6.198 6.655  19.385 -3.090 -2.726 -0.809 "HO3'" X4A 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X4A OP3   P      SING N N 1  
X4A OP3   HOP3   SING N N 2  
X4A P     OP1    DOUB N N 3  
X4A P     OP2    SING N N 4  
X4A P     "O5'"  SING N N 5  
X4A OP2   HOP2   SING N N 6  
X4A "O5'" "C5'"  SING N N 7  
X4A "C5'" "C4'"  SING N N 8  
X4A "C5'" "H5'"  SING N N 9  
X4A "C5'" "H5''" SING N N 10 
X4A "C4'" O4A    SING N N 11 
X4A "C4'" "O4'"  SING N N 12 
X4A "C4'" "C3'"  SING N N 13 
X4A O4A   H4A    SING N N 14 
X4A "O4'" "C1'"  SING N N 15 
X4A "C1'" O1A    SING N N 16 
X4A "C1'" "C2'"  SING N N 17 
X4A "C1'" "H1'"  SING N N 18 
X4A O1A   H1A    SING N N 19 
X4A "C3'" "C2'"  SING N N 20 
X4A "C3'" "O3'"  SING N N 21 
X4A "C3'" "H3'"  SING N N 22 
X4A "C2'" "H2'"  SING N N 23 
X4A "C2'" "H2''" SING N N 24 
X4A "O3'" "HO3'" SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X4A SMILES           ACDLabs              10.04 "O=P(OCC1(O)OC(O)CC1O)(O)O"                                                                          
X4A SMILES_CANONICAL CACTVS               3.341 "O[C@@H]1C[C@H](O)[C@@](O)(CO[P](O)(O)=O)O1"                                                         
X4A SMILES           CACTVS               3.341 "O[CH]1C[CH](O)[C](O)(CO[P](O)(O)=O)O1"                                                              
X4A SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@](O[C@@H]1O)(COP(=O)(O)O)O)O"                                                           
X4A SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1O)(COP(=O)(O)O)O)O"                                                                        
X4A InChI            InChI                1.03  "InChI=1S/C5H11O8P/c6-3-1-4(7)13-5(3,8)2-12-14(9,10)11/h3-4,6-8H,1-2H2,(H2,9,10,11)/t3-,4-,5+/m0/s1" 
X4A InChIKey         InChI                1.03  SJMLCPWMIBHTKX-VAYJURFESA-N                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X4A "SYSTEMATIC NAME" ACDLabs              10.04 "[(2R,3S,5S)-2,3,5-trihydroxytetrahydrofuran-2-yl]methyl dihydrogen phosphate (non-preferred name)" 
X4A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5S)-2,3,5-trihydroxyoxolan-2-yl]methyl dihydrogen phosphate"                               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X4A "Create component"  2006-07-27 RCSB 
X4A "Modify descriptor" 2011-06-04 RCSB 
# 
