data_W0A
#

_chem_comp.id                                   W0A
_chem_comp.name                                 "N-[(1H-benzimidazol-2-yl)methyl]butanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H15 N3 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-24
_chem_comp.pdbx_modified_date                   2021-01-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       217.267
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    W0A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RQD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W0A  N1   N1   N  0  1  Y  N  N  14.685  6.166  11.477  -1.512   0.985   0.773  N1   W0A   1  
W0A  C4   C1   C  0  1  N  N  N  14.535  8.652  11.249   0.673   1.133  -0.523  C4   W0A   2  
W0A  C5   C2   C  0  1  Y  N  N  14.705  7.249  10.717  -0.747   0.674  -0.308  C5   W0A   3  
W0A  C6   C3   C  0  1  Y  N  N  14.917  5.111  10.603  -2.737   0.374   0.599  C6   W0A   4  
W0A  C7   C4   C  0  1  Y  N  N  15.038  3.748  10.843  -3.905   0.318   1.347  C7   W0A   5  
W0A  C8   C5   C  0  1  Y  N  N  15.297  2.909   9.769  -4.982  -0.403   0.878  C8   W0A   6  
W0A  C10  C6   C  0  1  Y  N  N  15.303  4.771   8.229  -3.768  -1.024  -1.088  C10  W0A   7  
W0A  O    O1   O  0  1  N  N  N  16.237  8.983  13.403   3.360   1.322  -0.614  O    W0A   8  
W0A  C3   C7   C  0  1  N  N  N  15.045  8.774  13.618   2.928   0.294  -0.139  C3   W0A   9  
W0A  C2   C8   C  0  1  N  N  N  14.492  8.725  15.021   3.878  -0.769   0.350  C2   W0A  10  
W0A  C1   C9   C  0  1  N  N  N  15.389  8.045  15.969   5.319  -0.303   0.132  C1   W0A  11  
W0A  C    C10  C  0  1  N  N  N  16.086  9.051  16.806   6.284  -1.382   0.628  C    W0A  12  
W0A  N    N2   N  0  1  N  N  N  14.150  8.624  12.644   1.597   0.101  -0.048  N    W0A  13  
W0A  N2   N3   N  0  1  Y  N  N  14.923  6.973   9.412  -1.419  -0.078  -1.130  N2   W0A  14  
W0A  C11  C11  C  0  1  Y  N  N  15.058  5.603   9.306  -2.661  -0.303  -0.630  C11  W0A  15  
W0A  C9   C12  C  0  1  Y  N  N  15.426  3.414   8.480  -4.907  -1.071  -0.336  C9   W0A  16  
W0A  H1   H1   H  0  1  N  N  N  14.536  6.117  12.465  -1.244   1.533   1.528  H1   W0A  17  
W0A  H2   H2   H  0  1  N  N  N  15.486  9.195  11.147   0.841   1.311  -1.585  H2   W0A  18  
W0A  H3   H3   H  0  1  N  N  N  13.755  9.167  10.669   0.844   2.056   0.031  H3   W0A  19  
W0A  H4   H4   H  0  1  N  N  N  14.933  3.351  11.842  -3.968   0.836   2.293  H4   W0A  20  
W0A  H5   H5   H  0  1  N  N  N  15.400  1.847   9.937  -5.891  -0.447   1.459  H5   W0A  21  
W0A  H6   H6   H  0  1  N  N  N  15.395  5.165   7.228  -3.720  -1.548  -2.031  H6   W0A  22  
W0A  H7   H7   H  0  1  N  N  N  14.329  9.755  15.370   3.710  -0.946   1.412  H7   W0A  23  
W0A  H8   H8   H  0  1  N  N  N  13.532  8.189  15.001   3.707  -1.692  -0.204  H8   W0A  24  
W0A  H9   H9   H  0  1  N  N  N  14.800  7.377  16.615   5.487  -0.126  -0.930  H9   W0A  25  
W0A  H10  H10  H  0  1  N  N  N  16.132  7.455  15.411   5.490   0.620   0.686  H10  W0A  26  
W0A  H11  H11  H  0  1  N  N  N  16.756  8.540  17.513   6.116  -1.559   1.691  H11  W0A  27  
W0A  H12  H12  H  0  1  N  N  N  16.675  9.719  16.161   6.114  -2.305   0.074  H12  W0A  28  
W0A  H13  H13  H  0  1  N  N  N  15.344  9.641  17.364   7.311  -1.049   0.473  H13  W0A  29  
W0A  H14  H14  H  0  1  N  N  N  13.188  8.489  12.882   1.251  -0.722   0.333  H14  W0A  30  
W0A  H16  H16  H  0  1  N  N  N  15.625  2.738   7.662  -5.760  -1.629  -0.693  H16  W0A  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W0A  C10  C9   DOUB  Y  N   1  
W0A  C10  C11  SING  Y  N   2  
W0A  C9   C8   SING  Y  N   3  
W0A  C11  N2   SING  Y  N   4  
W0A  C11  C6   DOUB  Y  N   5  
W0A  N2   C5   DOUB  Y  N   6  
W0A  C8   C7   DOUB  Y  N   7  
W0A  C6   C7   SING  Y  N   8  
W0A  C6   N1   SING  Y  N   9  
W0A  C5   C4   SING  N  N  10  
W0A  C5   N1   SING  Y  N  11  
W0A  C4   N    SING  N  N  12  
W0A  N    C3   SING  N  N  13  
W0A  O    C3   DOUB  N  N  14  
W0A  C3   C2   SING  N  N  15  
W0A  C2   C1   SING  N  N  16  
W0A  C1   C    SING  N  N  17  
W0A  N1   H1   SING  N  N  18  
W0A  C4   H2   SING  N  N  19  
W0A  C4   H3   SING  N  N  20  
W0A  C7   H4   SING  N  N  21  
W0A  C8   H5   SING  N  N  22  
W0A  C10  H6   SING  N  N  23  
W0A  C2   H7   SING  N  N  24  
W0A  C2   H8   SING  N  N  25  
W0A  C1   H9   SING  N  N  26  
W0A  C1   H10  SING  N  N  27  
W0A  C    H11  SING  N  N  28  
W0A  C    H12  SING  N  N  29  
W0A  C    H13  SING  N  N  30  
W0A  N    H14  SING  N  N  31  
W0A  C9   H16  SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W0A  SMILES            ACDLabs               12.01  "n1c(CNC(=O)CCC)nc2c1cccc2"  
W0A  InChI             InChI                 1.03   "InChI=1S/C12H15N3O/c1-2-5-12(16)13-8-11-14-9-6-3-4-7-10(9)15-11/h3-4,6-7H,2,5,8H2,1H3,(H,13,16)(H,14,15)"  
W0A  InChIKey          InChI                 1.03   MXDONONSXPZRMO-UHFFFAOYSA-N  
W0A  SMILES_CANONICAL  CACTVS                3.385  "CCCC(=O)NCc1[nH]c2ccccc2n1"  
W0A  SMILES            CACTVS                3.385  "CCCC(=O)NCc1[nH]c2ccccc2n1"  
W0A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCC(=O)NCc1[nH]c2ccccc2n1"  
W0A  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCC(=O)NCc1[nH]c2ccccc2n1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W0A  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(1H-benzimidazol-2-yl)methyl]butanamide"  
W0A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-(1~{H}-benzimidazol-2-ylmethyl)butanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W0A  "Create component"  2020-09-24  RCSB  
W0A  "Initial release"   2021-01-13  RCSB  
##
