data_VLA
#

_chem_comp.id                                   VLA
_chem_comp.name                                 "N-(4-{[(2,4-diamino-7,8-dihydropyrido[3,2-d]pyrimidin-6-yl)methyl]amino}benzene-1-carbonyl)-L-glutamic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H23 N7 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-27
_chem_comp.pdbx_modified_date                   2021-04-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       441.441
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VLA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JX1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VLA  C    C1   C  0  1  N  N  N  -13.888  13.073  -19.055  -3.615  -1.314   0.530  C    VLA   1  
VLA  N    N1   N  0  1  N  N  N  -14.238  12.387  -20.182  -4.507  -0.529  -0.107  N    VLA   2  
VLA  CA   C2   C  0  1  N  N  S  -13.294  12.163  -21.342  -5.941  -0.804   0.011  CA   VLA   3  
VLA  O    O1   O  0  1  N  N  N  -12.719  13.537  -18.957  -4.002  -2.250   1.204  O    VLA   4  
VLA  CB   C3   C  0  1  N  N  N  -12.953  10.593  -21.439  -6.729   0.484  -0.235  CB   VLA   5  
VLA  CG   C4   C  0  1  N  N  N  -13.638   9.673  -20.339  -6.417   1.492   0.873  CG   VLA   6  
VLA  CD   C5   C  0  1  N  N  N  -13.134   8.190  -20.212  -7.194   2.760   0.632  CD   VLA   7  
VLA  OE1  O2   O  0  1  N  N  N  -13.309   7.340  -21.157  -7.921   2.850  -0.329  OE1  VLA   8  
VLA  OE2  O3   O  0  1  N  N  N  -12.527   7.748  -19.161  -7.076   3.792   1.483  OE2  VLA   9  
VLA  C12  C6   C  0  1  Y  N  N  -14.800  13.322  -17.762  -2.171  -1.041   0.407  C12  VLA  10  
VLA  C13  C7   C  0  1  Y  N  N  -16.103  12.769  -17.571  -1.245  -1.857   1.063  C13  VLA  11  
VLA  C14  C8   C  0  1  Y  N  N  -16.863  13.000  -16.383   0.102  -1.600   0.945  C14  VLA  12  
VLA  C15  C9   C  0  1  Y  N  N  -16.355  13.788  -15.322   0.542  -0.528   0.174  C15  VLA  13  
VLA  C16  C10  C  0  1  Y  N  N  -15.049  14.326  -15.510  -0.377   0.287  -0.481  C16  VLA  14  
VLA  C17  C11  C  0  1  Y  N  N  -14.294  14.087  -16.704  -1.725   0.031  -0.372  C17  VLA  15  
VLA  C2   C12  C  0  1  Y  N  N  -12.344  19.425  -13.714   8.559   0.117   0.202  C2   VLA  16  
VLA  C4   C13  C  0  1  Y  N  N  -13.943  18.139  -15.013   6.602  -1.080   0.462  C4   VLA  17  
VLA  C4A  C14  C  0  1  Y  N  N  -14.471  17.542  -13.771   5.881   0.056   0.050  C4A  VLA  18  
VLA  C6   C15  C  0  1  N  N  N  -15.660  15.661  -12.602   3.874   0.916  -0.716  C6   VLA  19  
VLA  C7   C16  C  0  1  N  N  N  -15.085  16.042  -11.214   4.584   1.999  -1.482  C7   VLA  20  
VLA  C8   C17  C  0  1  N  N  N  -14.339  17.412  -11.195   5.842   2.434  -0.731  C8   VLA  21  
VLA  C8A  C18  C  0  1  Y  N  N  -13.863  17.963  -12.568   6.592   1.207  -0.282  C8A  VLA  22  
VLA  C9   C19  C  0  1  N  N  N  -16.373  14.247  -12.775   2.369   0.857  -0.755  C9   VLA  23  
VLA  CT   C20  C  0  1  N  N  N  -13.906  12.745  -22.672  -6.339  -1.839  -1.009  CT   VLA  24  
VLA  N1   N2   N  0  1  Y  N  N  -12.814  18.891  -12.528   7.909   1.204  -0.196  N1   VLA  25  
VLA  N10  N3   N  0  1  N  N  N  -17.112  14.040  -14.071   1.904  -0.271   0.057  N10  VLA  26  
VLA  N3   N4   N  0  1  Y  N  N  -12.887  19.070  -14.975   7.928  -1.003   0.522  N3   VLA  27  
VLA  N5   N5   N  0  1  N  N  N  -15.585  16.556  -13.732   4.518   0.040  -0.028  N5   VLA  28  
VLA  NA2  N6   N  0  1  N  N  N  -11.258  20.382  -13.650   9.940   0.153   0.280  NA2  VLA  29  
VLA  NA4  N7   N  0  1  N  N  N  -14.469  17.797  -16.302   5.946  -2.251   0.797  NA4  VLA  30  
VLA  O1   O4   O  0  1  N  N  N  -13.172  12.935  -23.688  -5.511  -2.300  -1.758  O1   VLA  31  
VLA  O2   O5   O  0  1  N  N  N  -15.155  13.044  -22.738  -7.615  -2.250  -1.086  O2   VLA  32  
VLA  H1   H1   H  0  1  N  N  N  -15.164  12.014  -20.244  -4.199   0.217  -0.645  H1   VLA  33  
VLA  H2   H2   H  0  1  N  N  N  -12.353  12.696  -21.140  -6.158  -1.178   1.012  H2   VLA  34  
VLA  H3   H3   H  0  1  N  N  N  -13.277  10.237  -22.428  -6.445   0.905  -1.199  H3   VLA  35  
VLA  H4   H4   H  0  1  N  N  N  -13.484  10.157  -19.363  -6.701   1.070   1.838  H4   VLA  36  
VLA  H5   H5   H  0  1  N  N  N  -12.309   6.831  -19.282  -7.594   4.584   1.286  H5   VLA  37  
VLA  H6   H6   H  0  1  N  N  N  -16.528  12.155  -18.351  -1.586  -2.688   1.662  H6   VLA  38  
VLA  H7   H7   H  0  1  N  N  N  -17.847  12.564  -16.292   0.818  -2.230   1.452  H7   VLA  39  
VLA  H8   H8   H  0  1  N  N  N  -14.615  14.932  -14.729  -0.032   1.118  -1.078  H8   VLA  40  
VLA  H9   H9   H  0  1  N  N  N  -13.304  14.510  -16.791  -2.438   0.661  -0.883  H9   VLA  41  
VLA  H10  H10  H  0  1  N  N  N  -15.917  16.090  -10.496   4.863   1.623  -2.466  H10  VLA  42  
VLA  H11  H11  H  0  1  N  N  N  -14.378  15.258  -10.905   3.919   2.855  -1.597  H11  VLA  43  
VLA  H12  H12  H  0  1  N  N  N  -13.452  17.300  -10.554   6.474   3.028  -1.391  H12  VLA  44  
VLA  H13  H13  H  0  1  N  N  N  -15.018  18.156  -10.754   5.562   3.028   0.138  H13  VLA  45  
VLA  H14  H14  H  0  1  N  N  N  -17.094  14.130  -11.953   1.959   1.785  -0.356  H14  VLA  46  
VLA  H15  H15  H  0  1  N  N  N  -17.660  14.862  -14.226   2.545  -0.837   0.512  H15  VLA  47  
VLA  H17  H17  H  0  1  N  N  N  -11.023  20.683  -14.574  10.418   0.964   0.045  H17  VLA  48  
VLA  H18  H18  H  0  1  N  N  N  -11.541  21.171  -13.104  10.430  -0.632   0.569  H18  VLA  49  
VLA  H19  H19  H  0  1  N  N  N  -13.975  18.302  -17.009   6.454  -3.028   1.079  H19  VLA  50  
VLA  H20  H20  H  0  1  N  N  N  -14.360  16.815  -16.456   4.978  -2.295   0.749  H20  VLA  51  
VLA  H21  H21  H  0  1  N  N  N  -15.354  13.387  -23.601  -7.823  -2.915  -1.756  H21  VLA  52  
VLA  H22  H22  H  0  1  N  N  N  -11.863  10.477  -21.346  -7.796   0.262  -0.235  H22  VLA  53  
VLA  H23  H23  H  0  1  N  N  N  -14.714   9.636  -20.565  -5.350   1.713   0.874  H23  VLA  54  
VLA  H24  H24  H  0  1  N  N  N  -15.600  13.468  -12.699   2.037   0.725  -1.784  H24  VLA  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VLA  O1   CT   DOUB  N  N   1  
VLA  O2   CT   SING  N  N   2  
VLA  CT   CA   SING  N  N   3  
VLA  CB   CA   SING  N  N   4  
VLA  CB   CG   SING  N  N   5  
VLA  CA   N    SING  N  N   6  
VLA  OE1  CD   DOUB  N  N   7  
VLA  CG   CD   SING  N  N   8  
VLA  CD   OE2  SING  N  N   9  
VLA  N    C    SING  N  N  10  
VLA  C    O    DOUB  N  N  11  
VLA  C    C12  SING  N  N  12  
VLA  C12  C13  DOUB  Y  N  13  
VLA  C12  C17  SING  Y  N  14  
VLA  C13  C14  SING  Y  N  15  
VLA  C17  C16  DOUB  Y  N  16  
VLA  C14  C15  DOUB  Y  N  17  
VLA  NA4  C4   SING  N  N  18  
VLA  C16  C15  SING  Y  N  19  
VLA  C15  N10  SING  N  N  20  
VLA  C4   N3   DOUB  Y  N  21  
VLA  C4   C4A  SING  Y  N  22  
VLA  N3   C2   SING  Y  N  23  
VLA  N10  C9   SING  N  N  24  
VLA  C4A  N5   SING  N  N  25  
VLA  C4A  C8A  DOUB  Y  N  26  
VLA  N5   C6   DOUB  N  N  27  
VLA  C2   NA2  SING  N  N  28  
VLA  C2   N1   DOUB  Y  N  29  
VLA  C9   C6   SING  N  N  30  
VLA  C6   C7   SING  N  N  31  
VLA  C8A  N1   SING  Y  N  32  
VLA  C8A  C8   SING  N  N  33  
VLA  C7   C8   SING  N  N  34  
VLA  N    H1   SING  N  N  35  
VLA  CA   H2   SING  N  N  36  
VLA  CB   H3   SING  N  N  37  
VLA  CG   H4   SING  N  N  38  
VLA  OE2  H5   SING  N  N  39  
VLA  C13  H6   SING  N  N  40  
VLA  C14  H7   SING  N  N  41  
VLA  C16  H8   SING  N  N  42  
VLA  C17  H9   SING  N  N  43  
VLA  C7   H10  SING  N  N  44  
VLA  C7   H11  SING  N  N  45  
VLA  C8   H12  SING  N  N  46  
VLA  C8   H13  SING  N  N  47  
VLA  C9   H14  SING  N  N  48  
VLA  N10  H15  SING  N  N  49  
VLA  NA2  H17  SING  N  N  50  
VLA  NA2  H18  SING  N  N  51  
VLA  NA4  H19  SING  N  N  52  
VLA  NA4  H20  SING  N  N  53  
VLA  O2   H21  SING  N  N  54  
VLA  CB   H22  SING  N  N  55  
VLA  CG   H23  SING  N  N  56  
VLA  C9   H24  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VLA  SMILES            ACDLabs               12.01  "C(=O)(c3ccc(NCC=2CCc1c(c(nc(N)n1)N)N=2)cc3)NC(CCC(O)=O)C(=O)O"  
VLA  InChI             InChI                 1.03   "InChI=1S/C20H23N7O5/c21-17-16-13(26-20(22)27-17)6-5-12(24-16)9-23-11-3-1-10(2-4-11)18(30)25-14(19(31)32)7-8-15(28)29/h1-4,14,23H,5-9H2,(H,25,30)(H,28,29)(H,31,32)(H4,21,22,26,27)/t14-/m0/s1"  
VLA  InChIKey          InChI                 1.03   QECVBNUHIUCZFO-AWEZNQCLSA-N  
VLA  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(N)c2N=C(CCc2n1)CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O"  
VLA  SMILES            CACTVS                3.385  "Nc1nc(N)c2N=C(CCc2n1)CNc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O"  
VLA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCC2=Nc3c(nc(nc3N)N)CC2"  
VLA  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NCC2=Nc3c(nc(nc3N)N)CC2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VLA  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(4-{[(2,4-diamino-7,8-dihydropyrido[3,2-d]pyrimidin-6-yl)methyl]amino}benzene-1-carbonyl)-L-glutamic acid"  
VLA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[4-[[2,4-bis(azanyl)-7,8-dihydropyrido[3,2-d]pyrimidin-6-yl]methylamino]phenyl]carbonylamino]pentanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VLA  "Create component"  2020-08-27  RCSB  
VLA  "Initial release"   2021-04-21  RCSB  
##
