data_VJA
# 
_chem_comp.id                                    VJA 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H40 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        504.619 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VJA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7JP0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VJA C1  C1  C 0 1 Y N N N N N -16.621 10.502 -2.588 10.133 1.679  1.020  C1  VJA 1  
VJA C10 C2  C 0 1 N N N N N N -12.931 -1.542 2.344  -4.839 -2.299 1.566  C10 VJA 2  
VJA C11 C3  C 0 1 N N S N N N -15.064 4.803  -0.471 2.115  -1.053 -0.428 C11 VJA 3  
VJA C12 C4  C 0 1 N N N N N N -15.224 3.525  0.297  0.933  -0.343 0.180  C12 VJA 4  
VJA C14 C5  C 0 1 N N S N N N -15.625 1.141  0.279  -1.429 0.255  0.181  C14 VJA 5  
VJA C15 C6  C 0 1 N N N N N N -14.242 0.603  0.537  -2.700 -0.533 -0.005 C15 VJA 6  
VJA C17 C7  C 0 1 N N R N N N -13.016 -0.053 2.701  -4.982 -1.087 0.643  C17 VJA 7  
VJA C19 C8  C 0 1 N N N N N N -11.640 0.537  2.994  -6.209 -0.272 1.059  C19 VJA 8  
VJA C2  C9  C 0 1 Y N N N N N -17.421 9.510  -3.158 9.854  0.342  1.235  C2  VJA 9  
VJA C20 C10 C 0 1 N N S N N N -11.626 2.037  2.760  -6.424 0.869  0.062  C20 VJA 10 
VJA C21 C11 C 0 1 N N N N N N -10.437 2.385  1.883  -7.642 1.727  0.477  C21 VJA 11 
VJA C22 C12 C 0 1 N N N N N N -9.812  3.615  2.531  -8.780 1.076  -0.339 C22 VJA 12 
VJA C24 C13 C 0 1 N N N N N N -11.394 2.818  4.014  -6.803 0.321  -1.296 C24 VJA 13 
VJA C3  C14 C 0 1 Y N N N N N -18.126 8.648  -2.321 8.783  -0.252 0.595  C3  VJA 14 
VJA C30 C15 C 0 1 N N N N N N -13.669 5.369  -0.305 2.055  -2.540 -0.073 C30 VJA 15 
VJA C31 C16 C 0 1 N N N N N N -13.614 6.733  -0.993 0.757  -3.141 -0.616 C31 VJA 16 
VJA C32 C17 C 0 1 N N N N N N -12.609 4.400  -0.816 3.251  -3.262 -0.696 C32 VJA 17 
VJA C34 C18 C 0 1 N N N N N N -16.434 0.166  -0.572 -1.538 1.583  -0.572 C34 VJA 18 
VJA C35 C19 C 0 1 N N N N N N -17.895 0.601  -0.693 -2.639 2.438  0.058  C35 VJA 19 
VJA C36 C20 C 0 1 N N N N N N -18.588 0.668  0.666  -2.222 2.845  1.473  C36 VJA 20 
VJA C37 C21 C 0 1 N N N N N N -18.662 -0.286 -1.684 -2.859 3.692  -0.790 C37 VJA 21 
VJA C4  C22 C 0 1 Y N N N N N -18.045 8.768  -0.937 7.989  0.491  -0.259 C4  VJA 22 
VJA C5  C23 C 0 1 Y N N N N N -17.238 9.751  -0.385 8.267  1.828  -0.473 C5  VJA 23 
VJA C6  C24 C 0 1 Y N N N N N -16.525 10.615 -1.205 9.340  2.421  0.166  C6  VJA 24 
VJA C7  C25 C 0 1 N N N N N N -18.819 7.842  -0.025 6.822  -0.158 -0.957 C7  VJA 25 
VJA C9  C26 C 0 1 N N N N N N -17.148 6.020  -0.355 4.494  -0.560 -0.617 C9  VJA 26 
VJA N10 N1  N 0 1 N N N N N N -15.928 5.798  0.096  3.355  -0.475 0.098  N10 VJA 27 
VJA N13 N2  N 0 1 N N N N N N -15.585 2.438  -0.381 -0.297 -0.512 -0.344 N13 VJA 28 
VJA N16 N3  N 0 1 N N N N N N -13.798 0.794  1.789  -3.783 -0.252 0.746  N16 VJA 29 
VJA N23 N4  N 0 1 N N N N N N -10.415 3.697  3.846  -8.125 0.454  -1.497 N23 VJA 30 
VJA O11 O1  O 0 1 N N N N N N -11.781 -1.789 1.514  -4.799 -1.861 2.925  O11 VJA 31 
VJA O26 O2  O 0 1 N N N N N N -12.029 2.662  5.048  -6.026 -0.168 -2.089 O26 VJA 32 
VJA O29 O3  O 0 1 N N N N N N -17.556 5.593  -1.424 4.493  -1.115 -1.697 O29 VJA 33 
VJA O33 O4  O 0 1 N N N N N N -15.042 3.499  1.505  1.088  0.382  1.140  O33 VJA 34 
VJA O38 O5  O 0 1 N N N N N N -13.605 0.100  -0.375 -2.748 -1.420 -0.831 O38 VJA 35 
VJA O8  O6  O 0 1 N N N N N N -18.014 6.802  0.508  5.633  -0.029 -0.133 O8  VJA 36 
VJA H1  H1  H 0 1 N N N N N N -16.075 11.184 -3.223 10.967 2.144  1.523  H1  VJA 37 
VJA H2  H2  H 0 1 N N N N N N -13.841 -1.838 1.802  -5.690 -2.966 1.424  H2  VJA 38 
VJA H3  H3  H 0 1 N N N N N N -12.846 -2.133 3.268  -3.918 -2.831 1.327  H3  VJA 39 
VJA H4  H4  H 0 1 N N N N N N -15.284 4.641  -1.536 2.091  -0.936 -1.511 H4  VJA 40 
VJA H5  H5  H 0 1 N N N N N N -16.136 1.251  1.247  -1.275 0.451  1.242  H5  VJA 41 
VJA H6  H6  H 0 1 N N N N N N -13.549 -0.022 3.663  -5.103 -1.426 -0.386 H6  VJA 42 
VJA H7  H7  H 0 1 N N N N N N -11.379 0.335  4.043  -7.088 -0.917 1.068  H7  VJA 43 
VJA H8  H8  H 0 1 N N N N N N -10.898 0.064  2.334  -6.050 0.141  2.055  H8  VJA 44 
VJA H9  H9  H 0 1 N N N N N N -17.492 9.412  -4.231 10.474 -0.238 1.902  H9  VJA 45 
VJA H10 H10 H 0 1 N N N N N N -12.561 2.354  2.276  -5.528 1.485  -0.011 H10 VJA 46 
VJA H11 H11 H 0 1 N N N N N N -10.766 2.614  0.859  -7.832 1.643  1.547  H11 VJA 47 
VJA H12 H12 H 0 1 N N N N N N -9.718  1.553  1.860  -7.501 2.769  0.188  H12 VJA 48 
VJA H13 H13 H 0 1 N N N N N N -8.722  3.496  2.613  -9.287 0.318  0.259  H13 VJA 49 
VJA H14 H14 H 0 1 N N N N N N -10.039 4.518  1.945  -9.489 1.834  -0.669 H14 VJA 50 
VJA H15 H15 H 0 1 N N N N N N -18.745 7.875  -2.753 8.566  -1.297 0.762  H15 VJA 51 
VJA H16 H16 H 0 1 N N N N N N -13.492 5.527  0.769  2.083  -2.656 1.011  H16 VJA 52 
VJA H17 H17 H 0 1 N N N N N N -14.400 7.383  -0.582 0.712  -2.994 -1.695 H17 VJA 53 
VJA H18 H18 H 0 1 N N N N N N -12.630 7.192  -0.818 0.729  -4.208 -0.393 H18 VJA 54 
VJA H19 H19 H 0 1 N N N N N N -13.772 6.605  -2.074 -0.096 -2.650 -0.147 H19 VJA 55 
VJA H20 H20 H 0 1 N N N N N N -12.701 3.441  -0.284 4.176  -2.833 -0.309 H20 VJA 56 
VJA H21 H21 H 0 1 N N N N N N -12.752 4.236  -1.894 3.208  -4.321 -0.443 H21 VJA 57 
VJA H22 H22 H 0 1 N N N N N N -11.609 4.823  -0.639 3.222  -3.145 -1.779 H22 VJA 58 
VJA H23 H23 H 0 1 N N N N N N -16.396 -0.830 -0.107 -0.587 2.113  -0.512 H23 VJA 59 
VJA H24 H24 H 0 1 N N N N N N -15.991 0.118  -1.578 -1.781 1.390  -1.617 H24 VJA 60 
VJA H25 H25 H 0 1 N N N N N N -17.895 1.620  -1.107 -3.564 1.863  0.103  H25 VJA 61 
VJA H26 H26 H 0 1 N N N N N N -18.007 1.311  1.343  -1.338 3.481  1.422  H26 VJA 62 
VJA H27 H27 H 0 1 N N N N N N -19.599 1.084  0.542  -3.036 3.392  1.948  H27 VJA 63 
VJA H28 H28 H 0 1 N N N N N N -18.658 -0.344 1.092  -1.995 1.953  2.056  H28 VJA 64 
VJA H29 H29 H 0 1 N N N N N N -19.707 0.053  -1.748 -3.156 3.402  -1.798 H29 VJA 65 
VJA H30 H30 H 0 1 N N N N N N -18.193 -0.217 -2.677 -3.644 4.301  -0.341 H30 VJA 66 
VJA H31 H31 H 0 1 N N N N N N -18.636 -1.330 -1.338 -1.934 4.267  -0.835 H31 VJA 67 
VJA H32 H32 H 0 1 N N N N N N -17.164 9.845  0.688  7.647  2.408  -1.141 H32 VJA 68 
VJA H33 H33 H 0 1 N N N N N N -15.895 11.376 -0.769 9.555  3.467  0.001  H33 VJA 69 
VJA H34 H34 H 0 1 N N N N N N -19.231 8.431  0.808  6.654  0.333  -1.916 H34 VJA 70 
VJA H35 H35 H 0 1 N N N N N N -19.643 7.391  -0.598 7.037  -1.213 -1.122 H35 VJA 71 
VJA H36 H36 H 0 1 N N N N N N -15.593 6.345  0.863  3.355  -0.032 0.961  H36 VJA 72 
VJA H37 H37 H 0 1 N N N N N N -15.830 2.513  -1.348 -0.433 -1.143 -1.069 H37 VJA 73 
VJA H38 H38 H 0 1 N N N N N N -14.047 1.682  2.175  -3.769 0.504  1.354  H38 VJA 74 
VJA H39 H39 H 0 1 N N N N N N -10.125 4.345  4.550  -8.587 0.176  -2.303 H39 VJA 75 
VJA H40 H40 H 0 1 N N N N N N -11.738 -2.713 1.299  -4.709 -2.579 3.567  H40 VJA 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VJA C2  C1  DOUB Y N 1  
VJA C2  C3  SING Y N 2  
VJA C1  C6  SING Y N 3  
VJA C3  C4  DOUB Y N 4  
VJA C37 C35 SING N N 5  
VJA O29 C9  DOUB N N 6  
VJA C6  C5  DOUB Y N 7  
VJA C31 C30 SING N N 8  
VJA C4  C5  SING Y N 9  
VJA C4  C7  SING N N 10 
VJA C32 C30 SING N N 11 
VJA C35 C34 SING N N 12 
VJA C35 C36 SING N N 13 
VJA C34 C14 SING N N 14 
VJA C11 C30 SING N N 15 
VJA C11 N10 SING N N 16 
VJA C11 C12 SING N N 17 
VJA N13 C14 SING N N 18 
VJA N13 C12 SING N N 19 
VJA O38 C15 DOUB N N 20 
VJA C9  N10 SING N N 21 
VJA C9  O8  SING N N 22 
VJA C7  O8  SING N N 23 
VJA C14 C15 SING N N 24 
VJA C12 O33 DOUB N N 25 
VJA C15 N16 SING N N 26 
VJA O11 C10 SING N N 27 
VJA N16 C17 SING N N 28 
VJA C21 C22 SING N N 29 
VJA C21 C20 SING N N 30 
VJA C10 C17 SING N N 31 
VJA C22 N23 SING N N 32 
VJA C17 C19 SING N N 33 
VJA C20 C19 SING N N 34 
VJA C20 C24 SING N N 35 
VJA N23 C24 SING N N 36 
VJA C24 O26 DOUB N N 37 
VJA C1  H1  SING N N 38 
VJA C10 H2  SING N N 39 
VJA C10 H3  SING N N 40 
VJA C11 H4  SING N N 41 
VJA C14 H5  SING N N 42 
VJA C17 H6  SING N N 43 
VJA C19 H7  SING N N 44 
VJA C19 H8  SING N N 45 
VJA C2  H9  SING N N 46 
VJA C20 H10 SING N N 47 
VJA C21 H11 SING N N 48 
VJA C21 H12 SING N N 49 
VJA C22 H13 SING N N 50 
VJA C22 H14 SING N N 51 
VJA C3  H15 SING N N 52 
VJA C30 H16 SING N N 53 
VJA C31 H17 SING N N 54 
VJA C31 H18 SING N N 55 
VJA C31 H19 SING N N 56 
VJA C32 H20 SING N N 57 
VJA C32 H21 SING N N 58 
VJA C32 H22 SING N N 59 
VJA C34 H23 SING N N 60 
VJA C34 H24 SING N N 61 
VJA C35 H25 SING N N 62 
VJA C36 H26 SING N N 63 
VJA C36 H27 SING N N 64 
VJA C36 H28 SING N N 65 
VJA C37 H29 SING N N 66 
VJA C37 H30 SING N N 67 
VJA C37 H31 SING N N 68 
VJA C5  H32 SING N N 69 
VJA C6  H33 SING N N 70 
VJA C7  H34 SING N N 71 
VJA C7  H35 SING N N 72 
VJA N10 H36 SING N N 73 
VJA N13 H37 SING N N 74 
VJA N16 H38 SING N N 75 
VJA N23 H39 SING N N 76 
VJA O11 H40 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VJA SMILES           ACDLabs              12.01 "c1ccc(cc1)COC(NC(C(C)C)C(=O)NC(C(NC(CO)CC2C(=O)NCC2)=O)CC(C)C)=O"                                                                                                                                                             
VJA InChI            InChI                1.03  "InChI=1S/C26H40N4O6/c1-16(2)12-21(24(33)28-20(14-31)13-19-10-11-27-23(19)32)29-25(34)22(17(3)4)30-26(35)36-15-18-8-6-5-7-9-18/h5-9,16-17,19-22,31H,10-15H2,1-4H3,(H,27,32)(H,28,33)(H,29,34)(H,30,35)/t19-,20+,21-,22-/m0/s1" 
VJA InChIKey         InChI                1.03  GLZAWCKOCLSXEU-LRSLUSHPSA-N                                                                                                                                                                                                    
VJA SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)OCc1ccccc1)C(C)C)C(=O)N[C@@H](CO)C[C@@H]2CCNC2=O"                                                                                                                                              
VJA SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)OCc1ccccc1)C(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O"                                                                                                                                                     
VJA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@H](C[C@@H]1CCNC1=O)CO)NC(=O)[C@H](C(C)C)NC(=O)OCc2ccccc2"                                                                                                                                               
VJA SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)C(C(C)C)NC(=O)OCc2ccccc2"                                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VJA "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide"                                                                                                             
VJA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{R})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VJA "Create component" 2020-08-14 RCSB 
VJA "Initial release"  2021-10-13 RCSB 
VJA "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VJA 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C10 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
