data_V7A
#

_chem_comp.id                                   V7A
_chem_comp.name                                 Sarecycline
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H29 N3 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-10
_chem_comp.pdbx_modified_date                   2020-07-31
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       487.502
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V7A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XQE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V7A  CAA  C1   C  0  1  Y  N  N  120.681  27.287  23.983  -4.285  -0.350   0.631  CAA  V7A   1  
V7A  CAB  C2   C  0  1  Y  N  N  120.807  27.415  25.366  -5.438   0.403   0.489  CAB  V7A   2  
V7A  CAC  C3   C  0  1  Y  N  N  121.499  28.492  25.905  -5.371   1.713   0.055  CAC  V7A   3  
V7A  CAD  C4   C  0  1  Y  N  N  122.049  29.444  25.056  -4.141   2.285  -0.235  CAD  V7A   4  
V7A  CAE  C5   C  0  1  Y  N  N  121.930  29.333  23.677  -2.973   1.529  -0.085  CAE  V7A   5  
V7A  CAF  C6   C  0  1  Y  N  N  121.250  28.248  23.137  -3.055   0.201   0.340  CAF  V7A   6  
V7A  CAG  C7   C  0  1  N  N  N  121.098  28.144  21.754  -1.807  -0.632   0.460  CAG  V7A   7  
V7A  CAH  C8   C  0  1  N  N  N  122.500  30.290  22.844  -1.654   2.116  -0.392  CAH  V7A   8  
V7A  CAI  C9   C  0  1  N  N  N  122.653  30.008  21.489  -0.478   1.426   0.026  CAI  V7A   9  
V7A  CAJ  C10  C  0  1  N  N  R  122.271  28.759  20.990  -0.637   0.231   0.929  CAJ  V7A  10  
V7A  CAK  C11  C  0  1  N  N  N  121.945  28.866  19.502   0.646  -0.603   0.935  CAK  V7A  11  
V7A  CAL  C12  C  0  1  N  N  N  123.279  30.940  20.658   0.708   1.861  -0.406  CAL  V7A  12  
V7A  CAM  C13  C  0  1  N  N  S  123.483  30.793  19.275   2.024   1.235  -0.030  CAM  V7A  13  
V7A  CAN  C14  C  0  1  N  N  S  123.229  29.331  18.880   1.821   0.337   1.192  CAN  V7A  14  
V7A  CAO  C15  C  0  1  N  N  S  123.241  29.151  17.357   3.086  -0.420   1.547  CAO  V7A  15  
V7A  CAP  C16  C  0  1  N  N  N  122.662  31.684  18.585   2.465   0.360  -1.188  CAP  V7A  16  
V7A  CAQ  C17  C  0  1  N  N  N  122.206  31.392  17.312   3.406  -0.729  -0.929  CAQ  V7A  17  
V7A  CAR  C18  C  0  1  N  N  N  122.487  30.164  16.736   3.689  -1.108   0.360  CAR  V7A  18  
V7A  CAS  C19  C  0  1  N  N  N  119.984  26.196  23.443  -4.373  -1.775   1.112  CAS  V7A  19  
V7A  CAV  C20  C  0  1  N  N  N  120.601  22.535  22.744  -2.745  -4.664   0.119  CAV  V7A  20  
V7A  CAW  C21  C  0  1  N  N  N  122.107  24.950  23.365  -5.219  -2.574  -1.011  CAW  V7A  21  
V7A  CBC  C22  C  0  1  N  N  N  121.422  32.327  16.632   4.051  -1.422  -2.056  CBC  V7A  22  
V7A  CBG  C23  C  0  1  N  N  N  124.509  28.316  15.581   3.604   1.081   3.375  CBG  V7A  23  
V7A  CBH  C24  C  0  1  N  N  N  125.427  28.222  17.730   5.384  -0.110   2.246  CBH  V7A  24  
V7A  NAT  N1   N  0  1  N  N  N  120.664  24.899  23.667  -4.144  -2.688  -0.016  NAT  V7A  25  
V7A  NBD  N2   N  0  1  N  N  N  121.208  33.472  17.290   3.597  -2.627  -2.455  NBD  V7A  26  
V7A  NBF  N3   N  0  1  N  N  N  124.611  29.066  16.838   4.068   0.525   2.097  NBF  V7A  27  
V7A  OAU  O1   O  0  1  N  N  N  120.037  23.851  22.808  -4.002  -4.068   0.447  OAU  V7A  28  
V7A  OAX  O2   O  0  1  N  N  N  122.741  30.518  25.520  -4.071   3.571  -0.662  OAX  V7A  29  
V7A  OAY  O3   O  0  1  N  N  N  122.904  31.354  23.308  -1.571   3.173  -0.993  OAY  V7A  30  
V7A  OAZ  O4   O  0  1  N  N  N  123.670  32.109  21.237   0.729   2.927  -1.231  OAZ  V7A  31  
V7A  OBA  O5   O  0  1  N  N  N  124.820  31.145  18.911   2.997   2.244   0.248  OBA  V7A  32  
V7A  OBB  O6   O  0  1  N  N  N  122.395  32.780  19.069   2.045   0.561  -2.309  OBB  V7A  33  
V7A  OBE  O7   O  0  1  N  N  N  120.974  32.078  15.509   4.995  -0.909  -2.626  OBE  V7A  34  
V7A  OBI  O8   O  0  1  N  N  N  121.955  29.943  15.497   4.535  -2.129   0.564  OBI  V7A  35  
V7A  H1   H1   H  0  1  N  N  N  120.366  26.676  26.019  -6.398  -0.037   0.719  H1   V7A  36  
V7A  H2   H2   H  0  1  N  N  N  121.609  28.588  26.975  -6.276   2.291  -0.059  H2   V7A  37  
V7A  H3   H3   H  0  1  N  N  N  120.174  28.664  21.460  -1.975  -1.433   1.181  H3   V7A  38  
V7A  H4   H4   H  0  1  N  N  N  121.021  27.080  21.486  -1.567  -1.065  -0.511  H4   V7A  39  
V7A  H5   H5   H  0  1  N  N  N  123.119  28.065  21.087  -0.829   0.574   1.946  H5   V7A  40  
V7A  H6   H6   H  0  1  N  N  N  121.141  29.596  19.330   0.595  -1.352   1.725  H6   V7A  41  
V7A  H7   H7   H  0  1  N  N  N  121.646  27.888  19.096   0.771  -1.094  -0.030  H7   V7A  42  
V7A  H8   H8   H  0  1  N  N  N  124.049  28.726  19.295   1.568   0.972   2.041  H8   V7A  43  
V7A  H9   H9   H  0  1  N  N  N  122.753  28.187  17.152   2.850  -1.166   2.306  H9   V7A  44  
V7A  H10  H10  H  0  1  N  N  N  119.877  26.352  22.359  -3.618  -1.948   1.878  H10  V7A  45  
V7A  H11  H11  H  0  1  N  N  N  118.988  26.153  23.908  -5.363  -1.957   1.531  H11  V7A  46  
V7A  H12  H12  H  0  1  N  N  N  120.002  21.912  22.064  -2.718  -5.687   0.497  H12  V7A  47  
V7A  H13  H13  H  0  1  N  N  N  121.634  22.597  22.371  -2.618  -4.673  -0.963  H13  V7A  48  
V7A  H14  H14  H  0  1  N  N  N  120.600  22.086  23.748  -1.940  -4.088   0.574  H14  V7A  49  
V7A  H15  H15  H  0  1  N  N  N  122.586  25.718  23.990  -5.193  -1.582  -1.462  H15  V7A  50  
V7A  H16  H16  H  0  1  N  N  N  122.561  23.970  23.576  -5.079  -3.329  -1.785  H16  V7A  51  
V7A  H17  H17  H  0  1  N  N  N  122.251  25.199  22.303  -6.182  -2.727  -0.525  H17  V7A  52  
V7A  H18  H18  H  0  1  N  N  N  125.508  28.213  15.133   3.357   0.267   4.057  H18  V7A  53  
V7A  H19  H19  H  0  1  N  N  N  124.093  27.318  15.783   4.392   1.695   3.812  H19  V7A  54  
V7A  H20  H20  H  0  1  N  N  N  123.849  28.855  14.885   2.719   1.694   3.205  H20  V7A  55  
V7A  H21  H21  H  0  1  N  N  N  125.548  28.724  18.701   5.290  -0.999   2.870  H21  V7A  56  
V7A  H22  H22  H  0  1  N  N  N  124.926  27.254  17.878   5.763  -0.394   1.264  H22  V7A  57  
V7A  H23  H23  H  0  1  N  N  N  126.416  28.058  17.277   6.075   0.591   2.713  H23  V7A  58  
V7A  H24  H24  H  0  1  N  N  N  120.654  34.192  16.873   2.798  -3.002  -2.052  H24  V7A  59  
V7A  H25  H25  H  0  1  N  N  N  121.602  33.607  18.199   4.068  -3.118  -3.146  H25  V7A  60  
V7A  H27  H27  H  0  1  N  N  N  122.966  31.088  24.794  -3.981   4.218   0.051  H27  V7A  61  
V7A  H28  H28  H  0  1  N  N  N  123.466  32.087  22.165   1.265   3.684  -0.957  H28  V7A  62  
V7A  H29  H29  H  0  1  N  N  N  124.858  32.070  18.699   3.129   2.873  -0.475  H29  V7A  63  
V7A  H30  H30  H  0  1  N  N  N  121.461  30.707  15.223   4.966  -2.505  -0.216  H30  V7A  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V7A  OBI  CAR  SING  N  N   1  
V7A  OBE  CBC  DOUB  N  N   2  
V7A  CBG  NBF  SING  N  N   3  
V7A  CBC  NBD  SING  N  N   4  
V7A  CBC  CAQ  SING  N  N   5  
V7A  CAR  CAQ  DOUB  N  N   6  
V7A  CAR  CAO  SING  N  N   7  
V7A  NBF  CAO  SING  N  N   8  
V7A  NBF  CBH  SING  N  N   9  
V7A  CAQ  CAP  SING  N  N  10  
V7A  CAO  CAN  SING  N  N  11  
V7A  CAP  OBB  DOUB  N  N  12  
V7A  CAP  CAM  SING  N  N  13  
V7A  CAN  CAM  SING  N  N  14  
V7A  CAN  CAK  SING  N  N  15  
V7A  OBA  CAM  SING  N  N  16  
V7A  CAM  CAL  SING  N  N  17  
V7A  CAK  CAJ  SING  N  N  18  
V7A  CAL  OAZ  SING  N  N  19  
V7A  CAL  CAI  DOUB  N  N  20  
V7A  CAJ  CAI  SING  N  N  21  
V7A  CAJ  CAG  SING  N  N  22  
V7A  CAI  CAH  SING  N  N  23  
V7A  CAG  CAF  SING  N  N  24  
V7A  CAV  OAU  SING  N  N  25  
V7A  OAU  NAT  SING  N  N  26  
V7A  CAH  OAY  DOUB  N  N  27  
V7A  CAH  CAE  SING  N  N  28  
V7A  CAF  CAE  DOUB  Y  N  29  
V7A  CAF  CAA  SING  Y  N  30  
V7A  CAW  NAT  SING  N  N  31  
V7A  CAS  NAT  SING  N  N  32  
V7A  CAS  CAA  SING  N  N  33  
V7A  CAE  CAD  SING  Y  N  34  
V7A  CAA  CAB  DOUB  Y  N  35  
V7A  CAD  OAX  SING  N  N  36  
V7A  CAD  CAC  DOUB  Y  N  37  
V7A  CAB  CAC  SING  Y  N  38  
V7A  CAB  H1   SING  N  N  39  
V7A  CAC  H2   SING  N  N  40  
V7A  CAG  H3   SING  N  N  41  
V7A  CAG  H4   SING  N  N  42  
V7A  CAJ  H5   SING  N  N  43  
V7A  CAK  H6   SING  N  N  44  
V7A  CAK  H7   SING  N  N  45  
V7A  CAN  H8   SING  N  N  46  
V7A  CAO  H9   SING  N  N  47  
V7A  CAS  H10  SING  N  N  48  
V7A  CAS  H11  SING  N  N  49  
V7A  CAV  H12  SING  N  N  50  
V7A  CAV  H13  SING  N  N  51  
V7A  CAV  H14  SING  N  N  52  
V7A  CAW  H15  SING  N  N  53  
V7A  CAW  H16  SING  N  N  54  
V7A  CAW  H17  SING  N  N  55  
V7A  CBG  H18  SING  N  N  56  
V7A  CBG  H19  SING  N  N  57  
V7A  CBG  H20  SING  N  N  58  
V7A  CBH  H21  SING  N  N  59  
V7A  CBH  H22  SING  N  N  60  
V7A  CBH  H23  SING  N  N  61  
V7A  NBD  H24  SING  N  N  62  
V7A  NBD  H25  SING  N  N  63  
V7A  OAX  H27  SING  N  N  64  
V7A  OAZ  H28  SING  N  N  65  
V7A  OBA  H29  SING  N  N  66  
V7A  OBI  H30  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V7A  SMILES            ACDLabs               12.01  "c1(ccc(O)c2c1CC3C(C2=O)=C(O)C4(C(C3)C(C(=C(C4=O)C(N)=O)O)N(C)C)O)CN(C)OC"  
V7A  InChI             InChI                 1.03   "InChI=1S/C24H29N3O8/c1-26(2)18-13-8-11-7-12-10(9-27(3)35-4)5-6-14(28)16(12)19(29)15(11)21(31)24(13,34)22(32)17(20(18)30)23(25)33/h5-6,11,13,18,28,30-31,34H,7-9H2,1-4H3,(H2,25,33)/t11-,13-,18-,24-/m0/s1"  
V7A  InChIKey          InChI                 1.03   PQJQFLNBMSCUSH-SBAJWEJLSA-N  
V7A  SMILES_CANONICAL  CACTVS                3.385  "CON(C)Cc1ccc(O)c2C(=O)C3=C(O)[C@@]4(O)[C@@H](C[C@@H]3Cc12)[C@H](N(C)C)C(=C(C(N)=O)C4=O)O"  
V7A  SMILES            CACTVS                3.385  "CON(C)Cc1ccc(O)c2C(=O)C3=C(O)[C]4(O)[CH](C[CH]3Cc12)[CH](N(C)C)C(=C(C(N)=O)C4=O)O"  
V7A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(ccc(c4C(=O)C3=C([C@@]2(C(=O)C(=C1O)C(=O)N)O)O)O)CN(C)OC"  
V7A  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(C)C1C2CC3Cc4c(ccc(c4C(=O)C3=C(C2(C(=O)C(=C1O)C(=O)N)O)O)O)CN(C)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V7A  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4S,4aS,5aR,12aS)-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-7-{[methoxy(methyl)amino]methyl}-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide"  
V7A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(4~{S},4~{a}~{S},5~{a}~{R},12~{a}~{S})-4-(dimethylamino)-7-[[methoxy(methyl)amino]methyl]-3,10,12,12~{a}-tetrakis(oxidanyl)-1,11-bis(oxidanylidene)-4~{a},5,5~{a},6-tetrahydro-4~{H}-tetracene-2-carboxamide"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     V7A
_pdbx_chem_comp_synonyms.name        "(4S,4aS,5aR,12aS)-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-7-{[methoxy(methyl)amino]methyl}-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V7A  "Create component"  2020-07-10  RCSB  
V7A  "Initial release"   2020-08-05  RCSB  
##
