data_UGA
#

_chem_comp.id                                   UGA
_chem_comp.name                                 "URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H22 N2 O18 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "UDP-GLUCURONIC ACID"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-12-13
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       580.285
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UGA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1DLJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UGA  "C1'"   "C1'"   C  0  1  N  N  R  -16.924  14.694  55.748   0.767   0.386   4.945  "C1'"   UGA   1  
UGA  "C2'"   "C2'"   C  0  1  N  N  R  -18.004  14.883  54.666   1.013  -0.445   6.205  "C2'"   UGA   2  
UGA  "O2'"   "O2'"   O  0  1  N  N  N  -17.897  16.200  54.150   2.225  -1.188   6.061  "O2'"   UGA   3  
UGA  "C3'"   "C3'"   C  0  1  N  N  S  -19.398  14.685  55.264  -0.159  -1.411   6.404  "C3'"   UGA   4  
UGA  "O3'"   "O3'"   O  0  1  N  N  N  -20.406  14.802  54.248  -0.019  -2.086   7.655  "O3'"   UGA   5  
UGA  "C4'"   "C4'"   C  0  1  N  N  S  -19.474  13.310  55.919  -1.466  -0.609   6.396  "C4'"   UGA   6  
UGA  "O4'"   "O4'"   O  0  1  N  N  N  -20.759  13.143  56.512  -2.582  -1.501   6.427  "O4'"   UGA   7  
UGA  "C5'"   "C5'"   C  0  1  N  N  S  -18.375  13.242  56.991  -1.523   0.237   5.122  "C5'"   UGA   8  
UGA  "O5'"   "O5'"   O  0  1  N  N  N  -17.083  13.444  56.385  -0.427   1.150   5.096  "O5'"   UGA   9  
UGA  "C6'"   "C6'"   C  0  1  N  N  N  -18.346  11.867  57.651  -2.817   1.008   5.092  "C6'"   UGA  10  
UGA  "O'P"   "O6'1"  O  0  1  N  N  N  -18.688  10.853  56.983  -2.801   2.215   5.052  "O'P"   UGA  11  
UGA  "O'Q"   "O6'2"  O  0  1  N  N  N  -17.979  11.798  58.850  -3.989   0.352   5.110  "O'Q"   UGA  12  
UGA  PB      PB      P  0  1  N  N  S  -15.764  16.080  57.620   1.166   0.328   2.536  PB      UGA  13  
UGA  O1B     O1B     O  0  1  N  N  N  -15.017  14.825  57.911   2.582   0.705   2.743  O1B     UGA  14  
UGA  O2B     O2B     O  0  1  N  N  N  -16.298  16.901  58.764   0.280   1.658   2.338  O2B     UGA  15  
UGA  O3B     O3B     O  0  1  N  N  N  -16.990  15.746  56.660   0.633  -0.484   3.820  O3B     UGA  16  
UGA  O3A     O3A     O  0  1  N  N  N  -14.765  17.002  56.797   1.043  -0.598   1.225  O3A     UGA  17  
UGA  PA      PA      P  0  1  N  N  R  -14.620  17.701  55.363   1.590   0.273  -0.012  PA      UGA  18  
UGA  O1A     O1A     O  0  1  N  N  N  -14.970  19.128  55.494   3.000   0.650   0.233  O1A     UGA  19  
UGA  O2A     O2A     O  0  1  N  N  N  -15.302  16.864  54.350   0.698   1.603  -0.168  O2A     UGA  20  
UGA  O5D     O5*     O  0  1  N  N  N  -13.045  17.572  55.105   1.496  -0.597  -1.364  O5D     UGA  21  
UGA  C5D     C5*     C  0  1  N  N  N  -12.428  16.273  55.128   1.993   0.226  -2.421  C5D     UGA  22  
UGA  C4D     C4*     C  0  1  N  N  R  -10.922  16.375  54.974   1.931  -0.545  -3.740  C4D     UGA  23  
UGA  O4D     O4*     O  0  1  N  N  N  -10.588  16.739  53.602   0.568  -0.880  -4.047  O4D     UGA  24  
UGA  C3D     C3*     C  0  1  N  N  S  -10.363  17.471  55.875   2.458   0.337  -4.889  C3D     UGA  25  
UGA  O3D     O3*     O  0  1  N  N  N   -9.106  17.031  56.418   3.592  -0.267  -5.513  O3D     UGA  26  
UGA  C2D     C2*     C  0  1  N  N  R  -10.195  18.656  54.924   1.268   0.413  -5.881  C2D     UGA  27  
UGA  O2D     O2*     O  0  1  N  N  N   -9.130  19.545  55.349   1.724   0.311  -7.231  O2D     UGA  28  
UGA  C1D     C1*     C  0  1  N  N  R   -9.827  17.973  53.610   0.434  -0.830  -5.483  C1D     UGA  29  
UGA  N1      N1      N  0  1  Y  N  N  -10.181  18.878  52.514  -0.969  -0.657  -5.865  N1      UGA  30  
UGA  C6      C6      C  0  1  Y  N  N  -11.505  19.106  52.200  -1.574  -1.588  -6.664  C6      UGA  31  
UGA  C2      C2      C  0  1  Y  N  N   -9.161  19.512  51.826  -1.653   0.413  -5.421  C2      UGA  32  
UGA  O2      O2      O  0  1  N  N  N   -7.966  19.331  52.061  -1.096   1.228  -4.711  O2      UGA  33  
UGA  N3      N3      N  0  1  Y  N  N   -9.581  20.371  50.833  -2.943   0.599  -5.760  N3      UGA  34  
UGA  C4      C4      C  0  1  Y  N  N  -10.886  20.652  50.475  -3.575  -0.295  -6.546  C4      UGA  35  
UGA  O4      O4      O  0  1  N  N  N  -11.124  21.476  49.593  -4.743  -0.129  -6.849  O4      UGA  36  
UGA  C5      C5      C  0  1  Y  N  N  -11.872  19.945  51.230  -2.868  -1.428  -7.015  C5      UGA  37  
UGA  "H1'1"  "1H1'"  H  0  0  N  N  N  -15.914  14.703  55.275   1.609   1.059   4.784  "H1'1"  UGA  38  
UGA  "H2'1"  "1H2'"  H  0  0  N  N  N  -17.854  14.131  53.855   1.091   0.215   7.069  "H2'1"  UGA  39  
UGA  "HO'2"  "2HO'"  H  0  0  N  N  N  -18.563  16.316  53.482   2.936  -0.544   5.939  "HO'2"  UGA  40  
UGA  "H3'1"  "1H3'"  H  0  0  N  N  N  -19.580  15.475  56.029  -0.173  -2.141   5.594  "H3'1"  UGA  41  
UGA  "HO'3"  "3HO'"  H  0  0  N  N  N  -21.271  14.679  54.619   0.816  -2.572   7.618  "HO'3"  UGA  42  
UGA  "H4'1"  "1H4'"  H  0  0  N  N  N  -19.324  12.498  55.169  -1.495   0.042   7.269  "H4'1"  UGA  43  
UGA  "HO'4"  "4HO'"  H  0  0  N  N  N  -20.806  12.286  56.920  -3.378  -0.952   6.416  "HO'4"  UGA  44  
UGA  "H5'1"  "1H5'"  H  0  0  N  N  N  -18.595  14.032  57.746  -1.470  -0.416   4.252  "H5'1"  UGA  45  
UGA  "HO'6"  "6HO'"  H  0  0  N  N  N  -17.960  10.941  59.261  -4.820   0.847   5.090  "HO'6"  UGA  46  
UGA  HOB2    2HOB    H  0  0  N  N  N  -16.774  17.701  58.578  -0.632   1.368   2.206  HOB2    UGA  47  
UGA  HOA2    2HOA    H  0  0  N  N  N  -15.216  17.278  53.499  -0.210   1.313  -0.327  HOA2    UGA  48  
UGA  H5A1    1H5*    H  0  0  N  N  N  -12.707  15.703  56.044   1.384   1.126  -2.497  H5A1    UGA  49  
UGA  "H5'2"  2H5*    H  0  0  N  N  N  -12.872  15.595  54.362   3.026   0.503  -2.210  "H5'2"  UGA  50  
UGA  H4A1    1H4*    H  0  0  N  N  N  -10.486  15.385  55.246   2.529  -1.453  -3.667  H4A1    UGA  51  
UGA  H3A1    1H3*    H  0  0  N  N  N  -11.007  17.731  56.746   2.712   1.331  -4.520  H3A1    UGA  52  
UGA  HOA3    3HO*    H  0  0  N  N  N   -8.757  17.713  56.979   3.837   0.299  -6.258  HOA3    UGA  53  
UGA  H2A1    1H2*    H  0  0  N  N  N  -11.105  19.297  54.867   0.696   1.329  -5.734  H2A1    UGA  54  
UGA  HOC2    2HO*    H  0  0  N  N  N   -9.025  20.281  54.758   2.234   1.112  -7.415  HOC2    UGA  55  
UGA  H1A1    1H1*    H  0  0  N  N  N   -8.742  17.742  53.494   0.846  -1.730  -5.939  H1A1    UGA  56  
UGA  H61     1H6     H  0  1  N  N  N  -12.310  18.592  52.751  -1.019  -2.446  -7.013  H61     UGA  57  
UGA  HN3     HN3     H  0  1  N  N  N   -8.848  20.849  50.307  -3.420   1.378  -5.434  HN3     UGA  58  
UGA  H51     1H5     H  0  1  N  N  N  -12.956  20.050  51.057  -3.358  -2.155  -7.646  H51     UGA  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UGA  "C1'"  "C2'"   SING  N  N   1  
UGA  "C1'"  "O5'"   SING  N  N   2  
UGA  "C1'"  O3B     SING  N  N   3  
UGA  "C1'"  "H1'1"  SING  N  N   4  
UGA  "C2'"  "O2'"   SING  N  N   5  
UGA  "C2'"  "C3'"   SING  N  N   6  
UGA  "C2'"  "H2'1"  SING  N  N   7  
UGA  "O2'"  "HO'2"  SING  N  N   8  
UGA  "C3'"  "O3'"   SING  N  N   9  
UGA  "C3'"  "C4'"   SING  N  N  10  
UGA  "C3'"  "H3'1"  SING  N  N  11  
UGA  "O3'"  "HO'3"  SING  N  N  12  
UGA  "C4'"  "O4'"   SING  N  N  13  
UGA  "C4'"  "C5'"   SING  N  N  14  
UGA  "C4'"  "H4'1"  SING  N  N  15  
UGA  "O4'"  "HO'4"  SING  N  N  16  
UGA  "C5'"  "O5'"   SING  N  N  17  
UGA  "C5'"  "C6'"   SING  N  N  18  
UGA  "C5'"  "H5'1"  SING  N  N  19  
UGA  "C6'"  "O'P"   DOUB  N  N  20  
UGA  "C6'"  "O'Q"   SING  N  N  21  
UGA  "O'Q"  "HO'6"  SING  N  N  22  
UGA  PB     O1B     DOUB  N  N  23  
UGA  PB     O2B     SING  N  N  24  
UGA  PB     O3B     SING  N  N  25  
UGA  PB     O3A     SING  N  N  26  
UGA  O2B    HOB2    SING  N  N  27  
UGA  O3A    PA      SING  N  N  28  
UGA  PA     O1A     DOUB  N  N  29  
UGA  PA     O2A     SING  N  N  30  
UGA  PA     O5D     SING  N  N  31  
UGA  O2A    HOA2    SING  N  N  32  
UGA  O5D    C5D     SING  N  N  33  
UGA  C5D    C4D     SING  N  N  34  
UGA  C5D    H5A1    SING  N  N  35  
UGA  C5D    "H5'2"  SING  N  N  36  
UGA  C4D    O4D     SING  N  N  37  
UGA  C4D    C3D     SING  N  N  38  
UGA  C4D    H4A1    SING  N  N  39  
UGA  O4D    C1D     SING  N  N  40  
UGA  C3D    O3D     SING  N  N  41  
UGA  C3D    C2D     SING  N  N  42  
UGA  C3D    H3A1    SING  N  N  43  
UGA  O3D    HOA3    SING  N  N  44  
UGA  C2D    O2D     SING  N  N  45  
UGA  C2D    C1D     SING  N  N  46  
UGA  C2D    H2A1    SING  N  N  47  
UGA  O2D    HOC2    SING  N  N  48  
UGA  C1D    N1      SING  N  N  49  
UGA  C1D    H1A1    SING  N  N  50  
UGA  N1     C6      SING  Y  N  51  
UGA  N1     C2      SING  Y  N  52  
UGA  C6     C5      DOUB  Y  N  53  
UGA  C6     H61     SING  N  N  54  
UGA  C2     O2      DOUB  N  N  55  
UGA  C2     N3      SING  Y  N  56  
UGA  N3     C4      SING  Y  N  57  
UGA  N3     HN3     SING  N  N  58  
UGA  C4     O4      DOUB  N  N  59  
UGA  C4     C5      SING  Y  N  60  
UGA  C5     H51     SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UGA  SMILES            ACDLabs               10.04  "O=C(O)C3OC(OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O)C(O)C(O)C3O"  
UGA  SMILES_CANONICAL  CACTVS                3.341  "O[C@@H]1[C@@H](O)[C@H](O[C@@H]([C@H]1O)C(O)=O)O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O"  
UGA  SMILES            CACTVS                3.341  "O[CH]1[CH](O)[CH](O[CH]([CH]1O)C(O)=O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O"  
UGA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)C(=O)O)O)O)O)O)O"  
UGA  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)C(=O)O)O)O)O)O)O"  
UGA  InChI             InChI                 1.03   "InChI=1S/C15H22N2O18P2/c18-5-1-2-17(15(26)16-5)12-9(22)6(19)4(32-12)3-31-36(27,28)35-37(29,30)34-14-10(23)7(20)8(21)11(33-14)13(24)25/h1-2,4,6-12,14,19-23H,3H2,(H,24,25)(H,27,28)(H,29,30)(H,16,18,26)/t4-,6-,7+,8+,9-,10-,11+,12-,14-/m1/s1"  
UGA  InChIKey          InChI                 1.03   HDYANYHVCAPMJV-LXQIFKJMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UGA  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S,3S,4S,5R,6R)-6-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-3,4,5-trihydroxytetrahydro-2H-pyran-2-carboxylic acid (non-preferred name)"  
UGA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3S,4S,5R,6R)-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4,5-trihydroxy-oxane-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UGA  "Create component"   1999-12-13  RCSB  
UGA  "Modify descriptor"  2011-06-04  RCSB  
UGA  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     UGA
_pdbx_chem_comp_synonyms.name        "UDP-GLUCURONIC ACID"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
