data_U3A
#

_chem_comp.id                                   U3A
_chem_comp.name                                 "5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H17 F3 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-10
_chem_comp.pdbx_modified_date                   2021-04-09
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       434.369
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U3A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6WIJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U3A  C11  C1   C  0  1  N  N  N  -14.599  -40.619  -16.303  -0.701  -1.367   0.184  C11  U3A   1  
U3A  C12  C2   C  0  1  N  N  N  -15.464  -40.383  -17.485  -1.488  -2.477   0.040  C12  U3A   2  
U3A  C25  C3   C  0  1  N  N  N  -15.348  -35.832  -14.905  -5.499   0.317  -0.264  C25  U3A   3  
U3A  C29  C4   C  0  1  Y  N  N  -12.628  -41.124  -11.225   5.810   0.647   1.682  C29  U3A   4  
U3A  F27  F1   F  0  1  N  N  N  -15.796  -35.543  -16.172  -5.118  -0.388  -1.411  F27  U3A   5  
U3A  F28  F2   F  0  1  N  N  N  -15.732  -34.823  -14.060  -5.376  -0.512   0.855  F28  U3A   6  
U3A  C01  C5   C  0  1  N  N  N   -8.635  -39.083  -13.277   9.394   0.371  -1.629  C01  U3A   7  
U3A  C03  C6   C  0  1  Y  N  N  -10.639  -39.413  -12.048   7.247   0.549  -0.628  C03  U3A   8  
U3A  C04  C7   C  0  1  Y  N  N  -10.784  -40.646  -12.675   5.866   0.684  -0.699  C04  U3A   9  
U3A  C05  C8   C  0  1  Y  N  N  -11.794  -41.537  -12.274   5.132   0.729   0.473  C05  U3A  10  
U3A  C06  C9   C  0  1  N  N  N  -11.980  -42.928  -12.965   3.632   0.864   0.438  C06  U3A  11  
U3A  C07  C10  C  0  1  N  N  N  -13.417  -43.118  -13.537   2.995  -0.527   0.401  C07  U3A  12  
U3A  C09  C11  C  0  1  N  N  N  -14.390  -41.993  -15.637   0.762  -1.498   0.331  C09  U3A  13  
U3A  C14  C12  C  0  1  N  N  N  -15.579  -38.982  -18.041  -2.940  -2.282  -0.109  C14  U3A  14  
U3A  C17  C13  C  0  1  N  N  N  -13.992  -38.118  -16.245  -2.638   0.005   0.045  C17  U3A  15  
U3A  C19  C14  C  0  1  Y  N  N  -13.188  -36.965  -15.529  -3.230   1.359   0.051  C19  U3A  16  
U3A  C20  C15  C  0  1  Y  N  N  -11.831  -37.016  -15.506  -2.413   2.480   0.199  C20  U3A  17  
U3A  C21  C16  C  0  1  Y  N  N  -11.107  -36.009  -14.868  -2.972   3.742   0.205  C21  U3A  18  
U3A  C22  C17  C  0  1  Y  N  N  -11.778  -34.959  -14.251  -4.339   3.896   0.063  C22  U3A  19  
U3A  C23  C18  C  0  1  Y  N  N  -13.131  -34.912  -14.268  -5.155   2.789  -0.084  C23  U3A  20  
U3A  C24  C19  C  0  1  Y  N  N  -13.861  -35.913  -14.900  -4.609   1.522  -0.097  C24  U3A  21  
U3A  C30  C20  C  0  1  Y  N  N  -12.439  -39.886  -10.633   7.185   0.524   1.678  C30  U3A  22  
U3A  F26  F3   F  0  1  N  N  N  -15.902  -36.980  -14.470  -6.828   0.734  -0.393  F26  U3A  23  
U3A  N08  N1   N  0  1  N  N  N  -13.731  -41.950  -14.341   1.537  -0.396   0.367  N08  U3A  24  
U3A  N16  N2   N  0  1  N  N  N  -14.843  -37.867  -17.416  -3.432  -1.037  -0.097  N16  U3A  25  
U3A  N18  N3   N  0  1  N  N  N  -13.873  -39.496  -15.690  -1.297  -0.125   0.185  N18  U3A  26  
U3A  N31  N4   N  0  1  Y  N  N  -11.460  -39.062  -11.047   7.857   0.479   0.544  N31  U3A  27  
U3A  O02  O1   O  0  1  N  N  N   -9.622  -38.525  -12.457   7.977   0.499  -1.770  O02  U3A  28  
U3A  O10  O2   O  0  1  N  N  N  -14.741  -43.035  -16.152   1.268  -2.600   0.420  O10  U3A  29  
U3A  O13  O3   O  0  1  N  N  N  -16.185  -41.487  -18.101  -0.946  -3.720   0.033  O13  U3A  30  
U3A  O15  O4   O  0  1  N  N  N  -16.258  -38.761  -18.981  -3.684  -3.241  -0.242  O15  U3A  31  
U3A  H1   H1   H  0  1  N  N  N  -13.419  -41.772  -10.878   5.268   0.684   2.615  H1   U3A  32  
U3A  H2   H2   H  0  1  N  N  N   -7.895  -38.312  -13.537   9.782   1.222  -1.070  H2   U3A  33  
U3A  H3   H3   H  0  1  N  N  N   -8.136  -39.905  -12.742   9.624  -0.550  -1.094  H3   U3A  34  
U3A  H4   H4   H  0  1  N  N  N   -9.098  -39.472  -14.196   9.856   0.343  -2.616  H4   U3A  35  
U3A  H5   H5   H  0  1  N  N  N  -10.115  -40.921  -13.477   5.371   0.746  -1.657  H5   U3A  36  
U3A  H6   H6   H  0  1  N  N  N  -11.786  -43.719  -12.225   3.294   1.395   1.328  H6   U3A  37  
U3A  H7   H7   H  0  1  N  N  N  -11.257  -43.013  -13.790   3.338   1.422  -0.451  H7   U3A  38  
U3A  H8   H8   H  0  1  N  N  N  -14.139  -43.210  -12.712   3.333  -1.057  -0.489  H8   U3A  39  
U3A  H9   H9   H  0  1  N  N  N  -13.455  -44.023  -14.161   3.290  -1.085   1.290  H9   U3A  40  
U3A  H10  H10  H  0  1  N  N  N  -11.313  -37.836  -15.981  -1.345   2.361   0.310  H10  U3A  41  
U3A  H11  H11  H  0  1  N  N  N  -10.028  -36.045  -14.853  -2.341   4.610   0.320  H11  U3A  42  
U3A  H12  H12  H  0  1  N  N  N  -11.218  -34.179  -13.757  -4.772   4.886   0.068  H12  U3A  43  
U3A  H13  H13  H  0  1  N  N  N  -13.646  -34.093  -13.788  -6.222   2.916  -0.194  H13  U3A  44  
U3A  H14  H14  H  0  1  N  N  N  -13.088  -39.578   -9.827   7.717   0.463   2.616  H14  U3A  45  
U3A  H15  H15  H  0  1  N  N  N  -13.476  -41.054  -13.978   1.129   0.484   0.371  H15  U3A  46  
U3A  H16  H16  H  0  1  N  N  N  -13.293  -39.659  -14.892  -0.748   0.669   0.283  H16  U3A  47  
U3A  H17  H17  H  0  1  N  N  N  -16.685  -41.165  -18.842  -1.593  -4.430  -0.075  H17  U3A  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U3A  O15  C14  DOUB  N  N   1  
U3A  O13  C12  SING  N  N   2  
U3A  C14  C12  SING  N  N   3  
U3A  C14  N16  SING  N  N   4  
U3A  C12  C11  DOUB  N  N   5  
U3A  N16  C17  DOUB  N  N   6  
U3A  C11  N18  SING  N  N   7  
U3A  C11  C09  SING  N  N   8  
U3A  C17  N18  SING  N  N   9  
U3A  C17  C19  SING  N  N  10  
U3A  F27  C25  SING  N  N  11  
U3A  O10  C09  DOUB  N  N  12  
U3A  C09  N08  SING  N  N  13  
U3A  C19  C20  DOUB  Y  N  14  
U3A  C19  C24  SING  Y  N  15  
U3A  C20  C21  SING  Y  N  16  
U3A  C25  C24  SING  N  N  17  
U3A  C25  F26  SING  N  N  18  
U3A  C25  F28  SING  N  N  19  
U3A  C24  C23  DOUB  Y  N  20  
U3A  C21  C22  DOUB  Y  N  21  
U3A  N08  C07  SING  N  N  22  
U3A  C23  C22  SING  Y  N  23  
U3A  C07  C06  SING  N  N  24  
U3A  C01  O02  SING  N  N  25  
U3A  C06  C05  SING  N  N  26  
U3A  C04  C05  DOUB  Y  N  27  
U3A  C04  C03  SING  Y  N  28  
U3A  O02  C03  SING  N  N  29  
U3A  C05  C29  SING  Y  N  30  
U3A  C03  N31  DOUB  Y  N  31  
U3A  C29  C30  DOUB  Y  N  32  
U3A  N31  C30  SING  Y  N  33  
U3A  C29  H1   SING  N  N  34  
U3A  C01  H2   SING  N  N  35  
U3A  C01  H3   SING  N  N  36  
U3A  C01  H4   SING  N  N  37  
U3A  C04  H5   SING  N  N  38  
U3A  C06  H6   SING  N  N  39  
U3A  C06  H7   SING  N  N  40  
U3A  C07  H8   SING  N  N  41  
U3A  C07  H9   SING  N  N  42  
U3A  C20  H10  SING  N  N  43  
U3A  C21  H11  SING  N  N  44  
U3A  C22  H12  SING  N  N  45  
U3A  C23  H13  SING  N  N  46  
U3A  C30  H14  SING  N  N  47  
U3A  N08  H15  SING  N  N  48  
U3A  N18  H16  SING  N  N  49  
U3A  O13  H17  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U3A  SMILES            ACDLabs               12.01  "C=2(NC(c1ccccc1C(F)(F)F)=NC(C=2O)=O)C(NCCc3ccnc(c3)OC)=O"  
U3A  InChI             InChI                 1.03   "InChI=1S/C20H17F3N4O4/c1-31-14-10-11(6-8-24-14)7-9-25-18(29)15-16(28)19(30)27-17(26-15)12-4-2-3-5-13(12)20(21,22)23/h2-6,8,10,28H,7,9H2,1H3,(H,25,29)(H,26,27,30)"  
U3A  InChIKey          InChI                 1.03   AUIOMZXCKKSZAA-UHFFFAOYSA-N  
U3A  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)N=C(N2)c3ccccc3C(F)(F)F)ccn1"  
U3A  SMILES            CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)N=C(N2)c3ccccc3C(F)(F)F)ccn1"  
U3A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)N=C(N2)c3ccccc3C(F)(F)F)O"  
U3A  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)N=C(N2)c3ccccc3C(F)(F)F)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U3A  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide"  
U3A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[2-(2-methoxypyridin-4-yl)ethyl]-5-oxidanyl-4-oxidanylidene-2-[2-(trifluoromethyl)phenyl]-1~{H}-pyrimidine-6-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U3A  "Create component"  2020-04-10  RCSB  
U3A  "Initial release"   2021-04-14  RCSB  
##
