data_U2A
#

_chem_comp.id                                   U2A
_chem_comp.name                                 "methyl 2-thio-beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       210.248
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U2A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MD6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U2A  S2   S2   S  0  1  N  N  N  27.478  33.551  35.264  -2.968   0.281  -0.266  S2   U2A   1  
U2A  C2   C2   C  0  1  N  N  R  28.448  33.563  33.762  -1.258   0.244   0.339  C2   U2A   2  
U2A  C1   C1   C  0  1  N  N  R  28.416  34.918  32.975  -0.567  -1.028  -0.157  C1   U2A   3  
U2A  O1   O1   O  0  1  N  N  N  27.141  35.309  32.432  -1.235  -2.173   0.379  O1   U2A   4  
U2A  C7   C7   C  0  1  N  N  N  27.078  36.594  31.795  -0.737  -3.419  -0.113  C7   U2A   5  
U2A  O5   O5   O  0  1  N  N  N  29.435  34.932  31.927   0.796  -1.027   0.272  O5   U2A   6  
U2A  C3   C3   C  0  1  N  N  S  29.920  33.299  34.175  -0.502   1.466  -0.190  C3   U2A   7  
U2A  O3   O3   O  0  1  N  N  N  30.098  32.084  34.943  -1.096   2.658   0.328  O3   U2A   8  
U2A  C4   C4   C  0  1  N  N  S  30.938  33.383  33.012   0.959   1.384   0.262  C4   U2A   9  
U2A  O4   O4   O  0  1  N  N  N  32.275  33.087  33.464   1.692   2.481  -0.287  O4   U2A  10  
U2A  C5   C5   C  0  1  N  N  R  30.835  34.767  32.326   1.565   0.067  -0.231  C5   U2A  11  
U2A  C6   C6   C  0  1  N  N  N  31.885  34.937  31.165   3.006  -0.050   0.268  C6   U2A  12  
U2A  O6   O6   O  0  1  N  N  N  31.437  35.876  30.174   3.608  -1.222  -0.286  O6   U2A  13  
U2A  H2   H2   H  0  1  N  N  N  28.079  32.747  33.123  -1.257   0.259   1.429  H2   U2A  14  
U2A  H1   H1   H  0  1  N  N  N  28.703  35.689  33.705  -0.605  -1.062  -1.245  H1   U2A  15  
U2A  H14  H14  H  0  1  N  N  N  26.057  36.771  31.426  -0.856  -3.455  -1.196  H14  U2A  16  
U2A  H15  H15  H  0  1  N  N  N  27.346  37.376  32.520   0.318  -3.514   0.140  H15  U2A  17  
U2A  H16  H16  H  0  1  N  N  N  27.783  36.620  30.951  -1.296  -4.238   0.341  H16  U2A  18  
U2A  H3   H3   H  0  1  N  N  N  30.183  34.129  34.848  -0.547   1.480  -1.279  H3   U2A  19  
U2A  HO3  HO3  H  0  1  N  Y  N  29.462  32.059  35.648  -2.025   2.772   0.086  HO3  U2A  20  
U2A  H4   H4   H  0  1  N  N  N  30.645  32.628  32.268   1.006   1.423   1.351  H4   U2A  21  
U2A  HO4  HO4  H  0  1  N  Y  N  32.288  32.231  33.876   1.359   3.349  -0.019  HO4  U2A  22  
U2A  H5   H5   H  0  1  N  N  N  31.070  35.527  33.086   1.554   0.048  -1.321  H5   U2A  23  
U2A  H61  H61  H  0  1  N  N  N  32.045  33.961  30.684   3.571   0.830  -0.042  H61  U2A  24  
U2A  H62  H62  H  0  1  N  N  N  32.833  35.295  31.592   3.010  -0.120   1.356  H62  U2A  25  
U2A  HO6  HO6  H  0  1  N  Y  N  32.093  35.953  29.491   4.525  -1.360  -0.012  HO6  U2A  26  
U2A  HS2  HS2  H  0  1  N  Y  N  27.676  32.344  35.704  -3.502  -0.832   0.269  HS2  U2A  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U2A  O6  C6   SING  N  N   1  
U2A  C6  C5   SING  N  N   2  
U2A  C7  O1   SING  N  N   3  
U2A  O5  C5   SING  N  N   4  
U2A  O5  C1   SING  N  N   5  
U2A  C5  C4   SING  N  N   6  
U2A  O1  C1   SING  N  N   7  
U2A  C1  C2   SING  N  N   8  
U2A  C4  O4   SING  N  N   9  
U2A  C4  C3   SING  N  N  10  
U2A  C2  C3   SING  N  N  11  
U2A  C2  S2   SING  N  N  12  
U2A  C3  O3   SING  N  N  13  
U2A  C2  H2   SING  N  N  14  
U2A  C1  H1   SING  N  N  15  
U2A  C7  H14  SING  N  N  16  
U2A  C7  H15  SING  N  N  17  
U2A  C7  H16  SING  N  N  18  
U2A  C3  H3   SING  N  N  19  
U2A  O3  HO3  SING  N  N  20  
U2A  C4  H4   SING  N  N  21  
U2A  O4  HO4  SING  N  N  22  
U2A  C5  H5   SING  N  N  23  
U2A  C6  H61  SING  N  N  24  
U2A  C6  H62  SING  N  N  25  
U2A  O6  HO6  SING  N  N  26  
U2A  S2  HS2  SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U2A  SMILES            ACDLabs               12.01  "SC1C(O)C(O)C(OC1OC)CO"  
U2A  InChI             InChI                 1.03   "InChI=1S/C7H14O5S/c1-11-7-6(13)5(10)4(9)3(2-8)12-7/h3-10,13H,2H2,1H3/t3-,4-,5+,6-,7-/m1/s1"  
U2A  InChIKey          InChI                 1.03   VHSKYAXEXJLKPC-XUUWZHRGSA-N  
U2A  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1S"  
U2A  SMILES            CACTVS                3.385  "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1S"  
U2A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)S"  
U2A  SMILES            "OpenEye OEToolkits"  2.0.7  "COC1C(C(C(C(O1)CO)O)O)S"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U2A  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 2-thio-beta-D-glucopyranoside"  
U2A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-5-sulfanyl-oxane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
U2A  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
U2A  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
U2A  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
U2A  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U2A  "Create component"  2020-04-08  RCSB  
U2A  "Initial release"   2020-07-29  RCSB  
##
