data_T6A
#

_chem_comp.id                                   T6A
_chem_comp.name                                 "N-[N-(9-B-D-RIBOFURANOSYLPURIN-6-YL)CARBAMOYL]THREONINE-5'-MONOPHOSPHATE"
_chem_comp.type                                 "RNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C15 H21 N6 O11 P"
_chem_comp.mon_nstd_parent_comp_id              A
_chem_comp.pdbx_synonyms                        "N-(NEBULARIN-6-YLCARBAMOYL)-L-THREONINE-5'-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       492.335
_chem_comp.one_letter_code                      A
_chem_comp.three_letter_code                    T6A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1FL8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T6A  P       P     P  0  1  N  N  N   -2.670  -2.509  20.510   1.990   0.017  -7.150  P       T6A   1  
T6A  OP1     O1P   O  0  1  N  N  N   -1.688  -1.444  20.812   2.598   1.266  -6.640  OP1     T6A   2  
T6A  OP2     O2P   O  0  1  N  N  N   -2.369  -3.505  19.457   3.151  -1.040  -7.502  OP2     T6A   3  
T6A  OP3     O3P   O  0  1  N  Y  N   -2.976  -3.305  21.881   1.136   0.338  -8.477  OP3     T6A   4  
T6A  "O5'"   O5*   O  0  1  N  N  N   -4.071  -1.804  20.141   1.020  -0.605  -6.026  "O5'"   T6A   5  
T6A  "C5'"   C5*   C  0  1  N  N  N   -5.089  -2.513  19.469   0.015   0.375  -5.758  "C5'"   T6A   6  
T6A  "C4'"   C4*   C  0  1  N  N  R   -6.326  -1.628  19.383  -0.944  -0.156  -4.692  "C4'"   T6A   7  
T6A  "O4'"   O4*   O  0  1  N  N  N   -6.569  -1.011  20.645  -0.235  -0.412  -3.459  "O4'"   T6A   8  
T6A  "C3'"   C3*   C  0  1  N  N  S   -6.185  -0.486  18.387  -1.994   0.916  -4.327  "C3'"   T6A   9  
T6A  "O3'"   O3*   O  0  1  N  N  N   -6.563  -0.911  17.072  -3.215   0.680  -5.031  "O3'"   T6A  10  
T6A  "C2'"   C2*   C  0  1  N  N  R   -7.127   0.566  18.968  -2.202   0.737  -2.805  "C2'"   T6A  11  
T6A  "O2'"   O2*   O  0  1  N  N  N   -8.416   0.432  18.414  -3.559   0.388  -2.523  "O2'"   T6A  12  
T6A  "C1'"   C1*   C  0  1  N  N  R   -7.185   0.262  20.460  -1.250  -0.419  -2.431  "C1'"   T6A  13  
T6A  N9      N9    N  0  1  Y  N  N   -6.492   1.294  21.204  -0.647  -0.180  -1.118  N9      T6A  14  
T6A  C8      C8    C  0  1  Y  N  N   -5.140   1.384  21.372   0.503   0.508  -0.872  C8      T6A  15  
T6A  N7      N7    N  0  1  Y  N  N   -4.811   2.484  21.997   0.745   0.527   0.405  N7      T6A  16  
T6A  C5      C5    C  0  1  Y  N  N   -6.030   3.135  22.224  -0.233  -0.140   1.061  C5      T6A  17  
T6A  C6      C6    C  0  1  Y  N  N   -6.366   4.359  22.815  -0.491  -0.445   2.407  C6      T6A  18  
T6A  N6      N6    N  0  1  N  N  N   -5.316   5.218  23.349   0.367  -0.015   3.409  N6      T6A  19  
T6A  N1      N1    N  0  1  Y  N  N   -7.668   4.684  22.847  -1.579  -1.149   2.699  N1      T6A  20  
T6A  C2      C2    C  0  1  Y  N  N   -8.646   3.909  22.345  -2.402  -1.562   1.753  C2      T6A  21  
T6A  N3      N3    N  0  1  Y  N  N   -8.391   2.729  21.756  -2.198  -1.305   0.478  N3      T6A  22  
T6A  C4      C4    C  0  1  Y  N  N   -7.078   2.410  21.731  -1.136  -0.607   0.089  C4      T6A  23  
T6A  C10     C10   C  0  1  N  N  N   -5.529   6.461  23.931   0.102  -0.312   4.697  C10     T6A  24  
T6A  O10     O10   O  0  1  N  N  N   -4.558   7.099  24.336  -0.889  -0.955   4.981  O10     T6A  25  
T6A  N11     N11   N  0  1  N  N  N   -6.793   7.005  24.065   0.935   0.105   5.670  N11     T6A  26  
T6A  C12     C12   C  0  1  N  N  S   -6.915   8.315  24.674   0.647  -0.217   7.070  C12     T6A  27  
T6A  C13     C13   C  0  1  N  N  N   -6.442   8.254  26.120  -0.197   0.875   7.673  C13     T6A  28  
T6A  ODA     O13A  O  0  1  N  N  N   -6.149   9.338  26.667  -0.979   0.616   8.557  ODA     T6A  29  
T6A  ODB     O13B  O  0  1  N  N  N   -6.384   7.123  26.650  -0.081   2.136   7.228  ODB     T6A  30  
T6A  C14     C14   C  0  1  N  N  R   -8.374   8.767  24.602   1.959  -0.334   7.847  C14     T6A  31  
T6A  O14     O14   O  0  1  N  N  N   -9.199   7.668  24.914   2.666   0.905   7.780  O14     T6A  32  
T6A  C15     C15   C  0  1  N  N  N   -8.744   9.288  23.214   2.817  -1.444   7.235  C15     T6A  33  
T6A  HOP2    2HOP  H  0  0  N  N  N   -2.999  -4.188  19.263   3.708  -0.629  -8.177  HOP2    T6A  34  
T6A  HOP3    3HOP  H  0  0  N  N  N   -3.606  -3.988  21.687   0.758  -0.499  -8.776  HOP3    T6A  35  
T6A  "H5'"   1H5*  H  0  1  N  N  N   -4.765  -2.777  18.463  -0.538   0.587  -6.672  "H5'"   T6A  36  
T6A  "H5''"  2H5*  H  0  0  N  N  N   -5.339  -3.418  20.020   0.487   1.289  -5.398  "H5''"  T6A  37  
T6A  "H4'"   H4*   H  0  1  N  N  N   -7.209  -2.227  19.120  -1.435  -1.064  -5.043  "H4'"   T6A  38  
T6A  "H3'"   H3*   H  0  1  N  N  N   -5.145  -0.133  18.415  -1.614   1.913  -4.548  "H3'"   T6A  39  
T6A  "HO3'"  H3T   H  0  0  N  Y  N   -6.475  -0.198  16.450  -3.830   1.378  -4.766  "HO3'"  T6A  40  
T6A  "H2'"   H2*   H  0  1  N  N  N   -6.727   1.577  18.820  -1.924   1.646  -2.272  "H2'"   T6A  41  
T6A  "HO2'"  2HO*  H  0  0  N  N  N   -8.743  -0.469  18.576  -4.107   1.122  -2.833  "HO2'"  T6A  42  
T6A  "H1'"   H1*   H  0  1  N  N  N   -8.233   0.194  20.784  -1.786  -1.368  -2.435  "H1'"   T6A  43  
T6A  H8      H8    H  0  1  N  N  N   -4.431   0.645  21.031   1.122   0.969  -1.627  H8      T6A  44  
T6A  HN6     HN6   H  0  1  N  N  N   -4.363   4.891  23.280   1.158   0.497   3.183  HN6     T6A  45  
T6A  H2      H2    H  0  1  N  N  N   -9.669   4.248  22.414  -3.275  -2.132   2.035  H2      T6A  46  
T6A  HN1     HN1   H  0  1  N  N  N   -7.574   6.460  23.728   1.727   0.618   5.444  HN1     T6A  47  
T6A  H12     H12   H  0  1  N  N  N   -6.286   9.004  24.110   0.108  -1.163   7.121  H12     T6A  48  
T6A  H13     H13   H  0  1  N  N  N   -6.088   7.084  27.552  -0.623   2.837   7.615  H13     T6A  49  
T6A  H14     H14   H  0  1  N  N  N   -8.548   9.539  25.352   1.745  -0.574   8.889  H14     T6A  50  
T6A  HO4     HO4   H  0  1  N  N  N  -10.114   7.957  24.890   2.836   1.079   6.844  HO4     T6A  51  
T6A  H151    1H15  H  0  0  N  N  N   -8.527   8.525  22.467   3.752  -1.528   7.789  H151    T6A  52  
T6A  H152    2H15  H  0  0  N  N  N   -9.810   9.516  23.192   2.278  -2.390   7.286  H152    T6A  53  
T6A  H153    3H15  H  0  0  N  N  N   -8.184  10.196  22.985   3.032  -1.204   6.194  H153    T6A  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T6A  P      OP1     DOUB  N  N   1  
T6A  P      OP2     SING  N  N   2  
T6A  P      OP3     SING  N  N   3  
T6A  P      "O5'"   SING  N  N   4  
T6A  OP2    HOP2    SING  N  N   5  
T6A  OP3    HOP3    SING  N  N   6  
T6A  "O5'"  "C5'"   SING  N  N   7  
T6A  "C5'"  "C4'"   SING  N  N   8  
T6A  "C5'"  "H5'"   SING  N  N   9  
T6A  "C5'"  "H5''"  SING  N  N  10  
T6A  "C4'"  "O4'"   SING  N  N  11  
T6A  "C4'"  "C3'"   SING  N  N  12  
T6A  "C4'"  "H4'"   SING  N  N  13  
T6A  "O4'"  "C1'"   SING  N  N  14  
T6A  "C3'"  "O3'"   SING  N  N  15  
T6A  "C3'"  "C2'"   SING  N  N  16  
T6A  "C3'"  "H3'"   SING  N  N  17  
T6A  "O3'"  "HO3'"  SING  N  N  18  
T6A  "C2'"  "O2'"   SING  N  N  19  
T6A  "C2'"  "C1'"   SING  N  N  20  
T6A  "C2'"  "H2'"   SING  N  N  21  
T6A  "O2'"  "HO2'"  SING  N  N  22  
T6A  "C1'"  N9      SING  N  N  23  
T6A  "C1'"  "H1'"   SING  N  N  24  
T6A  N9     C8      SING  Y  N  25  
T6A  N9     C4      SING  Y  N  26  
T6A  C8     N7      DOUB  Y  N  27  
T6A  C8     H8      SING  N  N  28  
T6A  N7     C5      SING  Y  N  29  
T6A  C5     C6      SING  Y  N  30  
T6A  C5     C4      DOUB  Y  N  31  
T6A  C6     N6      SING  N  N  32  
T6A  C6     N1      DOUB  Y  N  33  
T6A  N6     C10     SING  N  N  34  
T6A  N6     HN6     SING  N  N  35  
T6A  N1     C2      SING  Y  N  36  
T6A  C2     N3      DOUB  Y  N  37  
T6A  C2     H2      SING  N  N  38  
T6A  N3     C4      SING  Y  N  39  
T6A  C10    O10     DOUB  N  N  40  
T6A  C10    N11     SING  N  N  41  
T6A  N11    C12     SING  N  N  42  
T6A  N11    HN1     SING  N  N  43  
T6A  C12    C13     SING  N  N  44  
T6A  C12    C14     SING  N  N  45  
T6A  C12    H12     SING  N  N  46  
T6A  C13    ODA     DOUB  N  N  47  
T6A  C13    ODB     SING  N  N  48  
T6A  ODB    H13     SING  N  N  49  
T6A  C14    O14     SING  N  N  50  
T6A  C14    C15     SING  N  N  51  
T6A  C14    H14     SING  N  N  52  
T6A  O14    HO4     SING  N  N  53  
T6A  C15    H151    SING  N  N  54  
T6A  C15    H152    SING  N  N  55  
T6A  C15    H153    SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T6A  SMILES            ACDLabs               10.04  "O=C(O)C(NC(=O)Nc3ncnc1c3ncn1C2OC(C(O)C2O)COP(=O)(O)O)C(O)C"  
T6A  SMILES_CANONICAL  CACTVS                3.341  "C[C@@H](O)[C@H](NC(=O)Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)C(O)=O"  
T6A  SMILES            CACTVS                3.341  "C[CH](O)[CH](NC(=O)Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)C(O)=O"  
T6A  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]([C@@H](C(=O)O)NC(=O)Nc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)O"  
T6A  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(C(C(=O)O)NC(=O)Nc1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)O"  
T6A  InChI             InChI                 1.03   "InChI=1S/C15H21N6O11P/c1-5(22)7(14(25)26)19-15(27)20-11-8-12(17-3-16-11)21(4-18-8)13-10(24)9(23)6(32-13)2-31-33(28,29)30/h3-7,9-10,13,22-24H,2H2,1H3,(H,25,26)(H2,28,29,30)(H2,16,17,19,20,27)/t5-,6-,7+,9-,10-,13-/m1/s1"  
T6A  InChIKey          InChI                 1.03   BHFCEFYJTLMMEQ-DWVDDHQFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T6A  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S,3R)-2-{[(9-{(2R,3R,4S,5R)-3,4-dihydroxy-5-[(phosphonooxy)methyl]tetrahydrofuran-2-yl}-9H-purin-6-yl)carbamoyl]amino}-3-hydroxybutanoic acid (non-preferred name)"  
T6A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3R)-2-[[9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]carbamoylamino]-3-hydroxy-butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T6A  "Create component"   1999-07-08  RCSB  
T6A  "Modify descriptor"  2011-06-04  RCSB  
T6A  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     T6A
_pdbx_chem_comp_synonyms.name        "N-(NEBULARIN-6-YLCARBAMOYL)-L-THREONINE-5'-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
