data_SRA
# 
_chem_comp.id                                    SRA 
_chem_comp.name                                  
;ADENOSINE -5'-THIO-MONOPHOSPHATE
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 N5 O6 P S" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-09-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        363.287 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     SRA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1D0T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SRA P      P    P 0 1 N N N -3.082 -1.866 2.917  0.770  -0.392 -4.550 P      SRA 1  
SRA OP1    O1P  O 0 1 N N N -2.608 -1.280 4.272  1.789  -1.486 -5.148 OP1    SRA 2  
SRA S2P    S2P  S 0 1 N N N -4.432 -0.811 1.668  1.662  1.227  -4.322 S2P    SRA 3  
SRA OP3    O3P  O 0 1 N Y N -3.703 -3.323 3.203  -0.458 -0.189 -5.570 OP3    SRA 4  
SRA "O5'"  O5*  O 0 1 N N N -1.772 -2.218 2.048  0.209  -0.901 -3.129 "O5'"  SRA 5  
SRA "C5'"  C5*  C 0 1 N N N -0.651 -2.871 2.652  -0.683 0.106  -2.652 "C5'"  SRA 6  
SRA "C4'"  C4*  C 0 1 N N R 0.306  -3.435 1.603  -1.254 -0.317 -1.297 "C4'"  SRA 7  
SRA "O4'"  O4*  O 0 1 N N N -0.372 -4.294 0.680  -0.194 -0.462 -0.328 "O4'"  SRA 8  
SRA "C3'"  C3*  C 0 1 N N S 0.904  -2.328 0.746  -2.164 0.791  -0.724 "C3'"  SRA 9  
SRA "O3'"  O3*  O 0 1 N N N 2.065  -1.742 1.351  -3.537 0.500  -0.990 "O3'"  SRA 10 
SRA "C2'"  C2*  C 0 1 N N R 1.254  -3.073 -0.528 -1.887 0.756  0.797  "C2'"  SRA 11 
SRA "C1'"  C1*  C 0 1 N N R 0.145  -4.112 -0.645 -0.840 -0.367 0.959  "C1'"  SRA 12 
SRA N9     N9   N 0 1 Y N N -0.908 -3.655 -1.574 0.133  -0.011 1.994  N9     SRA 13 
SRA C8     C8   C 0 1 Y N N -2.090 -3.044 -1.314 1.288  0.689  1.807  C8     SRA 14 
SRA N7     N7   N 0 1 Y N N -2.839 -2.742 -2.322 1.913  0.825  2.941  N7     SRA 15 
SRA C5     C5   C 0 1 Y N N -2.069 -3.205 -3.393 1.199  0.227  3.924  C5     SRA 16 
SRA C6     C6   C 0 1 Y N N -2.274 -3.204 -4.776 1.377  0.049  5.307  C6     SRA 17 
SRA N6     N6   N 0 1 N N N -3.367 -2.704 -5.351 2.491  0.562  5.949  N6     SRA 18 
SRA N1     N1   N 0 1 Y N N -1.310 -3.740 -5.545 0.449  -0.617 5.984  N1     SRA 19 
SRA C2     C2   C 0 1 Y N N -0.210 -4.250 -4.991 -0.616 -1.110 5.380  C2     SRA 20 
SRA N3     N3   N 0 1 Y N N 0.086  -4.304 -3.696 -0.821 -0.974 4.087  N3     SRA 21 
SRA C4     C4   C 0 1 Y N N -0.893 -3.761 -2.946 0.051  -0.321 3.328  C4     SRA 22 
SRA "O2'"  O2*  O 0 1 N N N 2.541  -3.694 -0.434 -3.082 0.444  1.516  "O2'"  SRA 23 
SRA HOP1   1HOP H 0 0 N N N -2.003 -1.752 4.831  2.100  -1.143 -5.997 HOP1   SRA 24 
SRA HOP3   3HOP H 0 0 N N N -3.993 -3.682 2.372  -0.892 -1.049 -5.660 HOP3   SRA 25 
SRA "H5'"  1H5* H 0 1 N N N -1.009 -3.687 3.279  -1.498 0.236  -3.365 "H5'"  SRA 26 
SRA "H5''" 2H5* H 0 0 N N N -0.114 -2.154 3.273  -0.144 1.047  -2.541 "H5''" SRA 27 
SRA "H4'"  H4*  H 0 1 N N N 1.102  -3.990 2.095  -1.809 -1.250 -1.395 "H4'"  SRA 28 
SRA "H3'"  H3*  H 0 1 N N N 0.145  -1.568 0.538  -1.893 1.761  -1.140 "H3'"  SRA 29 
SRA "HO3'" *HO3 H 0 0 N Y N 2.438  -1.051 0.816  -4.055 1.223  -0.611 "HO3'" SRA 30 
SRA "H2'"  1H2* H 0 1 N N N 1.215  -2.391 -1.379 -1.478 1.709  1.132  "H2'"  SRA 31 
SRA "H1'"  H1*  H 0 1 N N N 0.565  -5.052 -1.004 -1.330 -1.309 1.208  "H1'"  SRA 32 
SRA H8     H8   H 0 1 N N N -2.395 -2.811 -0.294 1.633  1.074  0.859  H8     SRA 33 
SRA HN61   1HN6 H 0 0 N N N -3.466 -2.727 -6.355 2.601  0.437  6.904  HN61   SRA 34 
SRA HN62   2HN6 H 0 0 N N N -4.097 -2.302 -4.781 3.163  1.044  5.442  HN62   SRA 35 
SRA H2     H2   H 0 1 N N N 0.530  -4.666 -5.675 -1.345 -1.646 5.969  H2     SRA 36 
SRA "HO2'" *HO2 H 0 0 N N N 2.551  -4.427 -1.054 -3.715 1.150  1.326  "HO2'" SRA 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SRA P     OP1    SING N N 1  
SRA P     S2P    DOUB N N 2  
SRA P     OP3    SING N N 3  
SRA P     "O5'"  SING N N 4  
SRA OP1   HOP1   SING N N 5  
SRA OP3   HOP3   SING N N 6  
SRA "O5'" "C5'"  SING N N 7  
SRA "C5'" "C4'"  SING N N 8  
SRA "C5'" "H5'"  SING N N 9  
SRA "C5'" "H5''" SING N N 10 
SRA "C4'" "O4'"  SING N N 11 
SRA "C4'" "C3'"  SING N N 12 
SRA "C4'" "H4'"  SING N N 13 
SRA "O4'" "C1'"  SING N N 14 
SRA "C3'" "O3'"  SING N N 15 
SRA "C3'" "C2'"  SING N N 16 
SRA "C3'" "H3'"  SING N N 17 
SRA "O3'" "HO3'" SING N N 18 
SRA "C2'" "C1'"  SING N N 19 
SRA "C2'" "O2'"  SING N N 20 
SRA "C2'" "H2'"  SING N N 21 
SRA "C1'" N9     SING N N 22 
SRA "C1'" "H1'"  SING N N 23 
SRA N9    C8     SING Y N 24 
SRA N9    C4     SING Y N 25 
SRA C8    N7     DOUB Y N 26 
SRA C8    H8     SING N N 27 
SRA N7    C5     SING Y N 28 
SRA C5    C6     SING Y N 29 
SRA C5    C4     DOUB Y N 30 
SRA C6    N6     SING N N 31 
SRA C6    N1     DOUB Y N 32 
SRA N6    HN61   SING N N 33 
SRA N6    HN62   SING N N 34 
SRA N1    C2     SING Y N 35 
SRA C2    N3     DOUB Y N 36 
SRA C2    H2     SING N N 37 
SRA N3    C4     SING Y N 38 
SRA "O2'" "HO2'" SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SRA SMILES           ACDLabs              10.04 "S=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"                                                                                                                        
SRA SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=S)[C@@H](O)[C@H]3O"                                                                                                    
SRA SMILES           CACTVS               3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=S)[CH](O)[CH]3O"                                                                                                          
SRA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=S)(O)O)O)O)N"                                                                                                
SRA SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=S)(O)O)O)O)N"                                                                                                                  
SRA InChI            InChI                1.03  "InChI=1S/C10H14N5O6PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(21-10)1-20-22(18,19)23/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,23)/t4-,6-,7-,10-/m1/s1" 
SRA InChIKey         InChI                1.03  UBCPYVAQZGCDJO-KQYNXXCUSA-N                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SRA "SYSTEMATIC NAME" ACDLabs              10.04 "5'-O-thiophosphonoadenosine"                                                               
SRA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(dihydroxyphosphinothioyloxymethyl)oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SRA "Create component"  1999-09-15 RCSB 
SRA "Modify descriptor" 2011-06-04 RCSB 
# 
