data_S2A
#

_chem_comp.id                                   S2A
_chem_comp.name                                 "(1R,3A'S,10'S,10A'R)-7-METHOXY-2-OXO-10',10A'-DIHYDRO-2H,3A'H-SPIRO[NAPHTHALENE-1,3'-PENTALENO[1,2-B]NAPHTHALEN]-10'-YL 2,6-DIDEOXY-2-(METHYLAMINO)-ALPHA-D-GALACTOPYRANOSIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H33 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "SPIROCYCLIC ALKENE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-01-10
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       539.618
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S2A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S2A  C10   C10   C  0  1  Y  N  N   -5.952  -0.867   1.799  -3.598  -0.015   0.896  C10   S2A   1  
S2A  C11   C11   C  0  1  N  N  R   -4.310   1.141   1.048  -1.727   0.379   2.684  C11   S2A   2  
S2A  CW9   CW9   C  0  1  N  N  S   -4.477  -0.392   1.436  -2.688  -0.623   1.959  CW9   S2A   3  
S2A  C22   C22   C  0  1  Y  N  N   -6.134   2.628   2.304  -2.815   2.724   2.718  C22   S2A   4  
S2A  C25   C25   C  0  1  N  N  N   -3.970  -1.097   0.141  -1.724  -1.631   1.374  C25   S2A   5  
S2A  C12   C12   C  0  1  N  N  S   -3.994   1.186  -0.489  -0.278   0.017   2.242  C12   S2A   6  
S2A  C23   C23   C  0  1  Y  N  N   -5.497   2.134   1.152  -1.807   1.840   2.360  C23   S2A   7  
S2A  CW5   CW5   C  0  1  Y  N  N   -6.282  -1.271   3.101  -4.969   0.166   1.155  CW5   S2A   8  
S2A  C24   C24   C  0  1  N  N  N   -3.731  -0.231  -0.874  -0.442  -1.284   1.526  C24   S2A   9  
S2A  CW8   CW8   C  0  1  N  N  N   -3.443  -0.660   2.582  -3.464  -1.376   3.054  CW8   S2A  10  
S2A  C14   C14   C  0  1  Y  N  N   -5.965   2.499  -0.112  -0.702   2.273   1.627  C14   S2A  11  
S2A  CW1   CW1   C  0  1  Y  N  N   -6.943  -0.839   0.808  -3.092   0.422  -0.344  CW1   S2A  12  
S2A  CW2   CW2   C  0  1  Y  N  N   -8.258  -1.192   1.101  -3.919   1.031  -1.289  CW2   S2A  13  
S2A  C16   C16   C  0  1  Y  N  N   -7.696   3.840   0.863  -1.614   4.503   1.549  C16   S2A  14  
S2A  CW3   CW3   C  0  1  Y  N  N   -8.582  -1.599   2.403  -5.268   1.215  -1.015  CW3   S2A  15  
S2A  CW4   CW4   C  0  1  Y  N  N   -7.599  -1.640   3.396  -5.793   0.785   0.202  CW4   S2A  16  
S2A  C21   C21   C  0  1  Y  N  N   -7.232   3.488   2.163  -2.731   4.065   2.311  C21   S2A  17  
S2A  CW7   CW7   C  0  1  N  N  N   -3.914  -1.056   3.957  -4.880  -1.018   3.301  CW7   S2A  18  
S2A  C15   C15   C  0  1  Y  N  N   -7.063   3.332  -0.257  -0.599   3.592   1.210  C15   S2A  19  
S2A  C20   C20   C  0  1  Y  N  N   -7.880   3.999   3.286  -3.738   4.984   2.643  C20   S2A  20  
S2A  C13   C13   C  0  1  N  N  S   -5.170   1.869  -1.229   0.247   1.152   1.339  C13   S2A  21  
S2A  CW6   CW6   C  0  1  N  N  N   -5.227  -1.328   4.206  -5.558  -0.286   2.415  CW6   S2A  22  
S2A  C18   C18   C  0  1  Y  N  N   -9.423   5.207   1.842  -2.557   6.744   1.484  C18   S2A  23  
S2A  C17   C17   C  0  1  Y  N  N   -8.784   4.695   0.717  -1.545   5.845   1.145  C17   S2A  24  
S2A  C19   C19   C  0  1  Y  N  N   -8.979   4.861   3.124  -3.651   6.315   2.231  C19   S2A  25  
S2A  C26   C26   C  0  1  N  N  R   -4.827   2.941  -3.577   2.539   0.826   0.913  C26   S2A  26  
S2A  OW7   OW7   O  0  1  N  N  N   -5.879   2.077  -4.154   2.347   1.076  -0.482  OW7   S2A  27  
S2A  C30   C30   C  0  1  N  N  R   -7.264   2.364  -3.780   2.521   2.452  -0.852  C30   S2A  28  
S2A  C29   C29   C  0  1  N  N  R   -7.578   3.819  -4.168   3.941   2.925  -0.516  C29   S2A  29  
S2A  OW5   OW5   O  0  1  N  N  N   -7.492   3.981  -5.557   4.895   2.197  -1.293  OW5   S2A  30  
S2A  C28   C28   C  0  1  N  N  R   -6.591   4.767  -3.542   4.239   2.686   0.969  C28   S2A  31  
S2A  OW4   OW4   O  0  1  N  N  N   -6.899   6.089  -3.954   5.604   2.995   1.240  OW4   S2A  32  
S2A  C27   C27   C  0  1  N  N  R   -5.146   4.404  -3.927   3.958   1.226   1.343  C27   S2A  33  
S2A  NW1   NW1   N  0  1  N  N  N   -4.219   5.283  -3.234   4.159   0.997   2.756  NW1   S2A  34  
S2A  C31   C31   C  0  1  N  N  N   -8.219   1.377  -4.467   2.193   2.565  -2.337  C31   S2A  35  
S2A  OW3   OW3   O  0  1  N  N  N   -4.707   2.887  -2.124   1.570   1.507   1.708  OW3   S2A  36  
S2A  CN    CN    C  0  1  N  N  N   -3.506   6.461  -3.785   3.878  -0.389   3.096  CN    S2A  37  
S2A  OW2   OW2   O  0  1  N  N  N   -9.196  -1.108   0.072  -3.401   1.450  -2.476  OW2   S2A  38  
S2A  CM    CM    C  0  1  N  N  N   -9.278   0.028  -0.819  -4.301   2.070  -3.394  CM    S2A  39  
S2A  OW1   OW1   O  0  1  N  N  N   -2.242  -0.494   2.362  -2.940  -2.215   3.789  OW1   S2A  40  
S2A  H11   H11   H  0  1  N  N  N   -3.567   1.469   1.790  -1.787   0.272   3.777  H11   S2A  41  
S2A  H22   H22   H  0  1  N  N  N   -5.782   2.348   3.286  -3.661   2.370   3.303  H22   S2A  42  
S2A  H25   H25   H  0  1  N  N  N   -3.824  -2.164   0.061  -2.038  -2.537   0.872  H25   S2A  43  
S2A  H12   H12   H  0  1  N  N  N   -3.115   1.788  -0.761   0.364  -0.126   3.122  H12   S2A  44  
S2A  H24   H24   H  0  1  N  N  N   -3.388  -0.533  -1.853   0.389  -1.873   1.163  H24   S2A  45  
S2A  HW1   HW1   H  0  1  N  N  N   -6.683  -0.540  -0.197  -2.039   0.301  -0.583  HW1   S2A  46  
S2A  HW3   HW3   H  0  1  N  N  N   -9.597  -1.882   2.640  -5.919   1.692  -1.743  HW3   S2A  47  
S2A  HW4   HW4   H  0  1  N  N  N   -7.857  -1.958   4.395  -6.853   0.933   0.396  HW4   S2A  48  
S2A  HW7   HW7   H  0  1  N  N  N   -3.197  -1.126   4.762  -5.347  -1.378   4.210  HW7   S2A  49  
S2A  H15   H15   H  0  1  N  N  N   -7.424   3.584  -1.243   0.260   3.908   0.623  H15   S2A  50  
S2A  H20   H20   H  0  1  N  N  N   -7.540   3.734   4.276  -4.603   4.672   3.224  H20   S2A  51  
S2A  H13   H13   H  0  1  N  N  N   -5.744   1.159  -1.842   0.227   0.900   0.273  H13   S2A  52  
S2A  HW6   HW6   H  0  1  N  N  N   -5.529  -1.590   5.209  -6.597  -0.039   2.611  HW6   S2A  53  
S2A  H18   H18   H  0  1  N  N  N  -10.265   5.874   1.726  -2.492   7.780   1.165  H18   S2A  54  
S2A  H17   H17   H  0  1  N  N  N   -9.133   4.961  -0.270  -0.701   6.205   0.560  H17   S2A  55  
S2A  H19   H19   H  0  1  N  N  N   -9.483   5.258   3.993  -4.437   7.016   2.494  H19   S2A  56  
S2A  H26   H26   H  0  1  N  N  N   -3.884   2.569  -4.003   2.389  -0.247   1.071  H26   S2A  57  
S2A  H30   H30   H  0  1  N  N  N   -7.401   2.243  -2.695   1.788   3.058  -0.305  H30   S2A  58  
S2A  H29   H29   H  0  1  N  N  N   -8.595   4.040  -3.811   4.073   3.983  -0.765  H29   S2A  59  
S2A  HOW5  HOW5  H  0  0  N  N  N   -7.473   4.907  -5.768   5.708   2.168  -0.769  HOW5  S2A  60  
S2A  H28   H28   H  0  1  N  N  N   -6.667   4.691  -2.447   3.624   3.362   1.575  H28   S2A  61  
S2A  HOW4  HOW4  H  0  0  N  N  N   -6.968   6.651  -3.191   5.891   3.612   0.549  HOW4  S2A  62  
S2A  H27   H27   H  0  1  N  N  N   -5.039   4.530  -5.015   4.676   0.593   0.807  H27   S2A  63  
S2A  HNW1  HNW1  H  0  0  N  N  N   -4.763   5.662  -2.485   5.124   1.217   2.989  HNW1  S2A  64  
S2A  H311  1H31  H  0  0  N  N  N   -8.447   1.733  -5.482   1.534   1.749  -2.648  H311  S2A  65  
S2A  H312  2H31  H  0  0  N  N  N   -7.744   0.387  -4.524   1.692   3.514  -2.549  H312  S2A  66  
S2A  H313  3H31  H  0  0  N  N  N   -9.150   1.304  -3.886   3.107   2.517  -2.936  H313  S2A  67  
S2A  HN1   1HN   H  0  1  N  N  N   -3.329   7.192  -2.982   2.894  -0.676   2.718  HN1   S2A  68  
S2A  HN2   2HN   H  0  1  N  N  N   -2.542   6.141  -4.208   3.892  -0.522   4.181  HN2   S2A  69  
S2A  HN3   3HN   H  0  1  N  N  N   -4.118   6.924  -4.574   4.631  -1.046   2.652  HN3   S2A  70  
S2A  HM1   1HM   H  0  1  N  N  N   -9.299   0.956  -0.229  -4.009   1.820  -4.417  HM1   S2A  71  
S2A  HM2   2HM   H  0  1  N  N  N   -8.402   0.036  -1.484  -4.277   3.154  -3.252  HM2   S2A  72  
S2A  HM3   3HM   H  0  1  N  N  N  -10.196  -0.044  -1.421  -5.312   1.702  -3.205  HM3   S2A  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S2A  C10  CW1   SING  Y  N   1  
S2A  C10  CW9   SING  N  N   2  
S2A  C10  CW5   DOUB  Y  N   3  
S2A  C11  C12   SING  N  N   4  
S2A  C11  C23   SING  N  N   5  
S2A  C11  CW9   SING  N  N   6  
S2A  C11  H11   SING  N  N   7  
S2A  CW9  C25   SING  N  N   8  
S2A  CW9  CW8   SING  N  N   9  
S2A  C22  C23   DOUB  Y  N  10  
S2A  C22  C21   SING  Y  N  11  
S2A  C22  H22   SING  N  N  12  
S2A  C25  C24   DOUB  N  N  13  
S2A  C25  H25   SING  N  N  14  
S2A  C12  C13   SING  N  N  15  
S2A  C12  C24   SING  N  N  16  
S2A  C12  H12   SING  N  N  17  
S2A  C23  C14   SING  Y  N  18  
S2A  CW5  CW4   SING  Y  N  19  
S2A  CW5  CW6   SING  N  N  20  
S2A  C24  H24   SING  N  N  21  
S2A  CW8  OW1   DOUB  N  N  22  
S2A  CW8  CW7   SING  N  N  23  
S2A  C14  C13   SING  N  N  24  
S2A  C14  C15   DOUB  Y  N  25  
S2A  CW1  CW2   DOUB  Y  N  26  
S2A  CW1  HW1   SING  N  N  27  
S2A  CW2  OW2   SING  N  N  28  
S2A  CW2  CW3   SING  Y  N  29  
S2A  C16  C15   SING  Y  N  30  
S2A  C16  C17   DOUB  Y  N  31  
S2A  C16  C21   SING  Y  N  32  
S2A  CW3  CW4   DOUB  Y  N  33  
S2A  CW3  HW3   SING  N  N  34  
S2A  CW4  HW4   SING  N  N  35  
S2A  C21  C20   DOUB  Y  N  36  
S2A  CW7  CW6   DOUB  N  N  37  
S2A  CW7  HW7   SING  N  N  38  
S2A  C15  H15   SING  N  N  39  
S2A  C20  C19   SING  Y  N  40  
S2A  C20  H20   SING  N  N  41  
S2A  C13  OW3   SING  N  N  42  
S2A  C13  H13   SING  N  N  43  
S2A  CW6  HW6   SING  N  N  44  
S2A  C18  C17   SING  Y  N  45  
S2A  C18  C19   DOUB  Y  N  46  
S2A  C18  H18   SING  N  N  47  
S2A  C17  H17   SING  N  N  48  
S2A  C19  H19   SING  N  N  49  
S2A  C26  OW7   SING  N  N  50  
S2A  C26  C27   SING  N  N  51  
S2A  C26  OW3   SING  N  N  52  
S2A  C26  H26   SING  N  N  53  
S2A  OW7  C30   SING  N  N  54  
S2A  C30  C31   SING  N  N  55  
S2A  C30  C29   SING  N  N  56  
S2A  C30  H30   SING  N  N  57  
S2A  C29  OW5   SING  N  N  58  
S2A  C29  C28   SING  N  N  59  
S2A  C29  H29   SING  N  N  60  
S2A  OW5  HOW5  SING  N  N  61  
S2A  C28  OW4   SING  N  N  62  
S2A  C28  C27   SING  N  N  63  
S2A  C28  H28   SING  N  N  64  
S2A  OW4  HOW4  SING  N  N  65  
S2A  C27  NW1   SING  N  N  66  
S2A  C27  H27   SING  N  N  67  
S2A  NW1  CN    SING  N  N  68  
S2A  NW1  HNW1  SING  N  N  69  
S2A  C31  H311  SING  N  N  70  
S2A  C31  H312  SING  N  N  71  
S2A  C31  H313  SING  N  N  72  
S2A  CN   HN1   SING  N  N  73  
S2A  CN   HN2   SING  N  N  74  
S2A  CN   HN3   SING  N  N  75  
S2A  OW2  CM    SING  N  N  76  
S2A  CM   HM1   SING  N  N  77  
S2A  CM   HM2   SING  N  N  78  
S2A  CM   HM3   SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S2A  SMILES            ACDLabs               10.04  "O=C7C=Cc1ccc(OC)cc1C76C=CC5C(OC2OC(C(O)C(O)C2NC)C)c4cc3ccccc3cc4C56"  
S2A  SMILES_CANONICAL  CACTVS                3.341  "CN[C@@H]1[C@@H](O)[C@@H](O)[C@@H](C)O[C@@H]1O[C@H]2[C@@H]3C=C[C@]4([C@@H]3c5cc6ccccc6cc25)C(=O)C=Cc7ccc(OC)cc47"  
S2A  SMILES            CACTVS                3.341  "CN[CH]1[CH](O)[CH](O)[CH](C)O[CH]1O[CH]2[CH]3C=C[C]4([CH]3c5cc6ccccc6cc25)C(=O)C=Cc7ccc(OC)cc47"  
S2A  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O[C@@H]2c3cc4ccccc4cc3[C@@H]5[C@H]2C=C[C@]56c7cc(ccc7C=CC6=O)OC)NC)O)O"  
S2A  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(C(C(O1)OC2c3cc4ccccc4cc3C5C2C=CC56c7cc(ccc7C=CC6=O)OC)NC)O)O"  
S2A  InChI             InChI                 1.03   "InChI=1S/C33H33NO6/c1-17-29(36)30(37)28(34-2)32(39-17)40-31-22-12-13-33(25-16-21(38-3)10-8-18(25)9-11-26(33)35)27(22)23-14-19-6-4-5-7-20(19)15-24(23)31/h4-17,22,27-32,34,36-37H,1-3H3/t17-,22-,27+,28-,29+,30-,31+,32-,33-/m1/s1"  
S2A  InChIKey          InChI                 1.03   JDIJVHOCLRRXFM-ILPMIGAWSA-N  
#
_pdbx_chem_comp_identifier.comp_id          S2A
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  10.04
_pdbx_chem_comp_identifier.identifier       "(1R,3a'S,10'S,10a'R)-7-methoxy-2-oxo-10',10a'-dihydro-2H,3a'H-spiro[naphthalene-1,3'-pentaleno[1,2-b]naphthalen]-10'-yl 2,6-dideoxy-2-(methylamino)-alpha-D-galactopyranoside"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S2A  "Create component"   2007-01-10  RCSB  
S2A  "Modify descriptor"  2011-06-04  RCSB  
S2A  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     S2A
_pdbx_chem_comp_synonyms.name        "SPIROCYCLIC ALKENE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
