data_RQA
#

_chem_comp.id                                   RQA
_chem_comp.name                                 "5'-O-sulfocytidine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H13 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-20
_chem_comp.pdbx_modified_date                   2021-01-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       323.280
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RQA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VWD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RQA  C1   C2   C  0  1  N  N  N  -232.187  257.990  286.192  -2.262   0.865  -0.514  C1   RQA   1  
RQA  C2   C4   C  0  1  N  N  N  -232.275  260.308  286.704  -4.355   1.709  -0.020  C2   RQA   2  
RQA  C3   C5   C  0  1  N  N  N  -233.652  260.190  286.933  -4.521   0.716   0.967  C3   RQA   3  
RQA  C4   C6   C  0  1  N  N  N  -234.237  258.921  286.766  -3.524  -0.178   1.171  C4   RQA   4  
RQA  C5   C1*  C  0  1  N  N  R  -234.154  256.483  286.255  -1.304  -1.055   0.632  C5   RQA   5  
RQA  C6   C2*  C  0  1  N  N  R  -234.684  255.887  287.569  -1.106  -1.941  -0.624  C6   RQA   6  
RQA  C7   C3*  C  0  1  N  N  S  -235.790  254.931  287.081   0.371  -2.380  -0.482  C7   RQA   7  
RQA  C8   C4*  C  0  1  N  N  R  -236.299  255.607  285.800   0.989  -1.329   0.460  C8   RQA   8  
RQA  C9   C5*  C  0  1  N  N  N  -237.611  256.326  285.938   2.159  -0.631  -0.235  C9   RQA   9  
RQA  N1   N1   N  0  1  N  N  N  -233.514  257.829  286.398  -2.390  -0.095   0.421  N1   RQA  10  
RQA  N2   N3   N  0  1  N  N  N  -231.603  259.223  286.343  -3.233   1.751  -0.727  N2   RQA  11  
RQA  N3   N4   N  0  1  N  N  N  -231.595  261.541  286.834  -5.352   2.629  -0.249  N3   RQA  12  
RQA  O1   O1S  O  0  1  N  N  N  -240.209  257.718  286.845   4.612   1.679   1.181  O1   RQA  13  
RQA  O2   O2   O  0  1  N  N  N  -231.496  257.078  285.864  -1.238   0.927  -1.173  O2   RQA  14  
RQA  O3   O2*  O  0  1  N  N  N  -233.655  255.299  288.350  -1.980  -3.071  -0.594  O3   RQA  15  
RQA  O4   O2S  O  0  1  N  N  N  -238.541  259.948  287.581   4.663   0.091  -0.748  O4   RQA  16  
RQA  O5   O3*  O  0  1  N  N  N  -235.253  253.642  286.748   0.452  -3.684   0.097  O5   RQA  17  
RQA  O6   O4*  O  0  1  N  N  N  -235.276  256.569  285.391  -0.039  -0.372   0.765  O6   RQA  18  
RQA  O7   O5*  O  0  1  N  N  N  -237.426  257.622  286.501   2.798   0.258   0.684  O7   RQA  19  
RQA  S1   S    S  0  1  N  N  N  -238.754  258.548  286.666   3.984   1.010   0.097  S1   RQA  20  
RQA  H1   H1   H  0  1  N  N  N  -234.244  261.044  287.228  -5.428   0.669   1.551  H1   RQA  21  
RQA  H2   H2   H  0  1  N  N  N  -235.298  258.810  286.936  -3.627  -0.948   1.922  H2   RQA  22  
RQA  H3   H3   H  0  1  N  N  N  -233.415  255.785  285.835  -1.504  -1.672   1.509  H3   RQA  23  
RQA  H4   H4   H  0  1  N  N  N  -235.163  256.696  288.140  -1.255  -1.361  -1.536  H4   RQA  24  
RQA  H5   H5   H  0  1  N  N  N  -236.595  254.862  287.827   0.869  -2.363  -1.452  H5   RQA  25  
RQA  H6   H6   H  0  1  N  N  N  -236.401  254.836  285.022   1.335  -1.809   1.376  H6   RQA  26  
RQA  H7   H7   H  0  1  N  N  N  -238.072  256.428  284.944   2.877  -1.377  -0.576  H7   RQA  27  
RQA  H8   H8   H  0  1  N  N  N  -238.275  255.741  286.592   1.789  -0.064  -1.089  H8   RQA  28  
RQA  H9   H9   H  0  1  N  N  N  -230.613  261.592  286.654  -6.171   2.596   0.269  H9   RQA  29  
RQA  H10  H10  H  0  1  N  N  N  -232.096  262.362  287.106  -5.235   3.312  -0.929  H10  RQA  30  
RQA  H12  H12  H  0  1  N  N  N  -234.027  254.945  289.149  -1.893  -3.656  -1.360  H12  RQA  31  
RQA  H14  H14  H  0  1  N  N  N  -234.936  253.217  287.536   0.027  -4.375  -0.429  H14  RQA  32  
RQA  O3S  O3S  O  0  1  N  Y  N  -238.693  258.825  285.220   3.423   2.095  -0.812  O3S  RQA  33  
RQA  H15  H15  H  0  1  N  Y  N  -239.466  258.471  284.796   4.099   2.637  -1.241  H15  RQA  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RQA  O6   C8   SING  N  N   1  
RQA  O6   C5   SING  N  N   2  
RQA  C8   C9   SING  N  N   3  
RQA  C8   C7   SING  N  N   4  
RQA  O2   C1   DOUB  N  N   5  
RQA  C9   O7   SING  N  N   6  
RQA  C1   N2   SING  N  N   7  
RQA  C1   N1   SING  N  N   8  
RQA  C5   N1   SING  N  N   9  
RQA  C5   C6   SING  N  N  10  
RQA  N2   C2   DOUB  N  N  11  
RQA  N1   C4   SING  N  N  12  
RQA  O7   S1   SING  N  N  13  
RQA  S1   O1   DOUB  N  N  14  
RQA  S1   O4   DOUB  N  N  15  
RQA  C2   N3   SING  N  N  16  
RQA  C2   C3   SING  N  N  17  
RQA  O5   C7   SING  N  N  18  
RQA  C4   C3   DOUB  N  N  19  
RQA  C7   C6   SING  N  N  20  
RQA  C6   O3   SING  N  N  21  
RQA  C3   H1   SING  N  N  22  
RQA  C4   H2   SING  N  N  23  
RQA  C5   H3   SING  N  N  24  
RQA  C6   H4   SING  N  N  25  
RQA  C7   H5   SING  N  N  26  
RQA  C8   H6   SING  N  N  27  
RQA  C9   H7   SING  N  N  28  
RQA  C9   H8   SING  N  N  29  
RQA  N3   H9   SING  N  N  30  
RQA  N3   H10  SING  N  N  31  
RQA  O3   H12  SING  N  N  32  
RQA  O5   H14  SING  N  N  33  
RQA  S1   O3S  SING  N  N  34  
RQA  O3S  H15  SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RQA  SMILES            ACDLabs               12.01  "C1(N=C(N)C=CN1C2C(O)C(C(COS(=O)(=O)O)O2)O)=O"  
RQA  InChI             InChI                 1.03   "InChI=1S/C9H13N3O8S/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H,16,17,18)/t4-,6-,7-,8-/m1/s1"  
RQA  InChIKey          InChI                 1.03   GSRRMZKNGWBOAT-XVFCMESISA-N  
RQA  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[S](O)(=O)=O)[C@@H](O)[C@H]2O"  
RQA  SMILES            CACTVS                3.385  "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[S](O)(=O)=O)[CH](O)[CH]2O"  
RQA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COS(=O)(=O)O)O)O"  
RQA  SMILES            "OpenEye OEToolkits"  2.0.7  "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COS(=O)(=O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RQA  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-sulfocytidine"  
RQA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen sulfate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RQA  "Create component"  2020-02-20  RCSB  
RQA  "Initial release"   2021-02-03  RCSB  
##
