data_RJA
# 
_chem_comp.id                                    RJA 
_chem_comp.name                                  "Ratjadone A, bound form" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H44 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        476.645 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RJA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HAU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RJA C1    C1    C 0 1 N N N N N N -34.340 76.057 28.738 5.408  -4.659 -1.040 C1    RJA 1  
RJA O1    O1    O 0 1 N N N N N N -35.559 76.097 28.998 6.150  -5.518 -1.758 O1    RJA 2  
RJA C2    C2    C 0 1 N N N N N N -33.330 76.121 29.870 5.812  -3.210 -0.948 C2    RJA 3  
RJA O2    O2    O 0 1 N N N N N N -30.430 72.861 29.297 4.271  -0.724 2.225  O2    RJA 4  
RJA C3    C3    C 0 1 N N N N N N -32.131 75.204 29.648 4.806  -2.455 -0.078 C3    RJA 5  
RJA O3    O3    O 0 1 N N N N N N -43.689 72.367 28.516 -4.936 1.967  -0.808 O3    RJA 6  
RJA C4    C4    C 0 1 N N N N N N -32.640 73.827 29.219 5.215  -0.984 0.016  C4    RJA 7  
RJA O4    O4    O 0 1 N N N N N N -43.977 72.573 33.728 -7.046 -2.612 -0.568 O4    RJA 8  
RJA C5    C5    C 0 1 N N R N N N -31.575 73.044 28.465 4.209  -0.228 0.886  C5    RJA 9  
RJA O5    O5    O 0 1 N N N N N N -43.935 71.020 30.550 -3.504 -0.477 -0.317 O5    RJA 10 
RJA C6    C6    C 0 1 N N N N N N -32.054 71.693 27.983 4.542  1.242  0.879  C6    RJA 11 
RJA C7    C7    C 0 1 N N N N N N -33.327 71.323 27.933 3.653  2.122  0.430  C7    RJA 12 
RJA C8    C8    C 0 1 N N N N N N -33.671 69.979 27.430 3.978  3.556  0.423  C8    RJA 13 
RJA C9    C9    C 0 1 N N N N N N -34.930 69.550 27.438 3.133  4.426  -0.119 C9    RJA 14 
RJA "O1'" "O1'" O 0 1 N N N N N N -33.931 75.978 27.567 4.415  -5.047 -0.473 "O1'" RJA 15 
RJA C10   C10   C 0 1 N N R N N N -36.042 70.407 27.968 1.782  3.964  -0.602 C10   RJA 16 
RJA C11   C11   C 0 1 N N N N N N -37.036 70.718 26.859 0.690  4.818  0.044  C11   RJA 17 
RJA C12   C12   C 0 1 N N N N N N -38.028 71.704 27.409 -0.664 4.279  -0.342 C12   RJA 18 
RJA C13   C13   C 0 1 N N N N N N -39.211 71.264 27.826 -1.294 3.430  0.463  C13   RJA 19 
RJA C14   C14   C 0 1 N N N N N N -40.205 72.151 28.404 -2.615 2.903  0.087  C14   RJA 20 
RJA C15   C15   C 0 1 N N N N N N -41.394 71.636 28.658 -3.246 2.054  0.891  C15   RJA 21 
RJA C16   C16   C 0 1 N N R N N N -42.490 72.443 29.293 -4.599 1.515  0.506  C16   RJA 22 
RJA C17   C17   C 0 1 N N R N N N -42.712 71.723 30.611 -4.563 -0.015 0.525  C17   RJA 23 
RJA C18   C18   C 0 1 N N N N N N -42.670 72.686 31.770 -5.897 -0.563 0.013  C18   RJA 24 
RJA C19   C19   C 0 1 N N R N N N -42.886 71.945 33.073 -5.831 -2.093 -0.022 C19   RJA 25 
RJA C20   C20   C 0 1 N N S N N N -43.281 70.503 32.843 -4.651 -2.523 -0.899 C20   RJA 26 
RJA C21   C21   C 0 1 N N S N N N -44.352 70.420 31.767 -3.365 -1.899 -0.351 C21   RJA 27 
RJA C22   C22   C 0 1 N N N N N N -44.729 68.985 31.513 -3.110 -2.412 1.042  C22   RJA 28 
RJA C23   C23   C 0 1 N N N N N N -46.006 68.688 31.368 -2.007 -3.068 1.308  C23   RJA 29 
RJA C24   C24   C 0 1 N N N N N N -46.463 67.278 31.116 -1.753 -3.582 2.701  C24   RJA 30 
RJA C25   C25   C 0 1 N N N N N N -32.615 69.069 26.883 5.270  4.040  1.031  C25   RJA 31 
RJA C26   C26   C 0 1 N N N N N N -36.715 69.671 29.112 1.708  4.106  -2.124 C26   RJA 32 
RJA C27   C27   C 0 1 N N N N N N -37.675 73.153 27.490 -1.302 4.702  -1.639 C27   RJA 33 
RJA C28   C28   C 0 1 N N N N N N -42.081 69.627 32.536 -4.529 -4.048 -0.880 C28   RJA 34 
RJA HO1   HO1   H 0 1 N N N N N N -36.057 76.058 28.190 5.851  -6.437 -1.787 HO1   RJA 35 
RJA H2    H2    H 0 1 N N N N N N -32.968 77.156 29.960 6.804  -3.137 -0.503 H2    RJA 36 
RJA H2A   H2A   H 0 1 N N N N N N -33.830 75.825 30.804 5.828  -2.773 -1.947 H2A   RJA 37 
RJA HO2   HO2   H 0 1 N N N N N N -29.768 72.372 28.822 5.138  -0.626 2.641  HO2   RJA 38 
RJA H3    H3    H 0 1 N N N N N N -31.486 75.622 28.861 3.813  -2.528 -0.523 H3    RJA 39 
RJA H3A   H3A   H 0 1 N N N N N N -31.557 75.112 30.582 4.789  -2.891 0.921  H3A   RJA 40 
RJA HO3   HO3   H 0 1 N N N N N N -44.370 72.882 28.932 -4.312 1.688  -1.492 HO3   RJA 41 
RJA H4    H4    H 0 1 N N N N N N -32.932 73.260 30.115 6.208  -0.910 0.461  H4    RJA 42 
RJA H4A   H4A   H 0 1 N N N N N N -33.516 73.958 28.566 5.232  -0.547 -0.983 H4A   RJA 43 
RJA HO4   HO4   H 0 1 N N N N N N -44.145 72.135 34.554 -7.837 -2.372 -0.066 HO4   RJA 44 
RJA H5    H5    H 0 1 N N N N N N -31.286 73.634 27.583 3.204  -0.375 0.491  H5    RJA 45 
RJA H6    H6    H 0 1 N N N N N N -31.310 70.981 27.658 5.503  1.579  1.238  H6    RJA 46 
RJA H7    H7    H 0 1 N N N N N N -34.104 71.999 28.257 2.692  1.784  0.071  H7    RJA 47 
RJA H9    H9    H 0 1 N N N N N N -35.156 68.566 27.056 3.414  5.465  -0.214 H9    RJA 48 
RJA H10   H10   H 0 1 N N N N N N -35.623 71.351 28.347 1.637  2.919  -0.327 H10   RJA 49 
RJA H11   H11   H 0 1 N N N N N N -36.512 71.154 25.996 0.798  4.787  1.128  H11   RJA 50 
RJA H11A  H11A  H 0 0 N N N N N N -37.553 69.798 26.548 0.782  5.848  -0.301 H11A  RJA 51 
RJA H13   H13   H 0 1 N N N N N N -39.440 70.213 27.732 -0.837 3.126  1.393  H13   RJA 52 
RJA H14   H14   H 0 1 N N N N N N -39.982 73.186 28.617 -3.073 3.207  -0.844 H14   RJA 53 
RJA H15   H15   H 0 1 N N N N N N -41.584 70.604 28.402 -2.789 1.751  1.821  H15   RJA 54 
RJA H16   H16   H 0 1 N N N N N N -42.170 73.482 29.463 -5.347 1.869  1.215  H16   RJA 55 
RJA H17   H17   H 0 1 N N N N N N -41.890 71.004 30.741 -4.394 -0.362 1.544  H17   RJA 56 
RJA H18   H18   H 0 1 N N N N N N -41.689 73.184 31.793 -6.700 -0.248 0.678  H18   RJA 57 
RJA H18A  H18A  H 0 0 N N N N N N -43.461 73.440 31.645 -6.085 -0.184 -0.992 H18A  RJA 58 
RJA H19   H19   H 0 1 N N N N N N -41.973 71.990 33.685 -5.694 -2.476 0.989  H19   RJA 59 
RJA H20   H20   H 0 1 N N N N N N -43.727 70.132 33.777 -4.814 -2.183 -1.921 H20   RJA 60 
RJA H21   H21   H 0 1 N N N N N N -45.244 70.944 32.140 -2.528 -2.166 -0.996 H21   RJA 61 
RJA H22   H22   H 0 1 N N N N N N -43.972 68.217 31.451 -3.837 -2.241 1.822  H22   RJA 62 
RJA H23   H23   H 0 1 N N N N N N -46.741 69.477 31.432 -1.281 -3.240 0.528  H23   RJA 63 
RJA H24   H24   H 0 1 N N N N N N -47.559 67.258 31.028 -0.793 -4.097 2.729  H24   RJA 64 
RJA H24A  H24A  H 0 0 N N N N N N -46.013 66.908 30.183 -1.737 -2.745 3.400  H24A  RJA 65 
RJA H24B  H24B  H 0 0 N N N N N N -46.151 66.636 31.953 -2.546 -4.275 2.983  H24B  RJA 66 
RJA H25   H25   H 0 1 N N N N N N -33.075 68.122 26.564 6.050  4.045  0.269  H25   RJA 67 
RJA H25A  H25A  H 0 0 N N N N N N -32.128 69.549 26.021 5.134  5.049  1.419  H25A  RJA 68 
RJA H25B  H25B  H 0 0 N N N N N N -31.865 68.867 27.662 5.560  3.374  1.843  H25B  RJA 69 
RJA H26   H26   H 0 1 N N N N N N -37.534 70.286 29.513 2.486  3.498  -2.584 H26   RJA 70 
RJA H26A  H26A  H 0 0 N N N N N N -37.119 68.716 28.746 0.731  3.772  -2.473 H26A  RJA 71 
RJA H26B  H26B  H 0 0 N N N N N N -35.979 69.477 29.906 1.854  5.151  -2.398 H26B  RJA 72 
RJA H27   H27   H 0 1 N N N N N N -38.520 73.714 27.916 -1.005 4.015  -2.432 H27   RJA 73 
RJA H27A  H27A  H 0 0 N N N N N N -36.791 73.280 28.132 -2.386 4.687  -1.533 H27A  RJA 74 
RJA H27B  H27B  H 0 0 N N N N N N -37.454 73.533 26.482 -0.976 5.711  -1.892 H27B  RJA 75 
RJA H28   H28   H 0 1 N N N N N N -42.414 68.591 32.376 -5.447 -4.491 -1.265 H28   RJA 76 
RJA H28A  H28A  H 0 0 N N N N N N -41.581 69.995 31.628 -3.688 -4.353 -1.504 H28A  RJA 77 
RJA H28B  H28B  H 0 0 N N N N N N -41.377 69.660 33.381 -4.363 -4.387 0.143  H28B  RJA 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RJA "O1'" C1   DOUB N N 1  
RJA C1    O1   SING N N 2  
RJA C1    C2   SING N N 3  
RJA O1    HO1  SING N N 4  
RJA C3    C2   SING N N 5  
RJA C2    H2   SING N N 6  
RJA C2    H2A  SING N N 7  
RJA C5    O2   SING N N 8  
RJA O2    HO2  SING N N 9  
RJA C4    C3   SING N N 10 
RJA C3    H3   SING N N 11 
RJA C3    H3A  SING N N 12 
RJA O3    C16  SING N N 13 
RJA O3    HO3  SING N N 14 
RJA C5    C4   SING N N 15 
RJA C4    H4   SING N N 16 
RJA C4    H4A  SING N N 17 
RJA C19   O4   SING N N 18 
RJA O4    HO4  SING N N 19 
RJA C6    C5   SING N N 20 
RJA C5    H5   SING N N 21 
RJA O5    C17  SING N N 22 
RJA O5    C21  SING N N 23 
RJA C7    C6   DOUB N E 24 
RJA C6    H6   SING N N 25 
RJA C8    C7   SING N N 26 
RJA C7    H7   SING N N 27 
RJA C25   C8   SING N N 28 
RJA C8    C9   DOUB N Z 29 
RJA C9    C10  SING N N 30 
RJA C9    H9   SING N N 31 
RJA C11   C10  SING N N 32 
RJA C10   C26  SING N N 33 
RJA C10   H10  SING N N 34 
RJA C11   C12  SING N N 35 
RJA C11   H11  SING N N 36 
RJA C11   H11A SING N N 37 
RJA C12   C27  SING N N 38 
RJA C12   C13  DOUB N E 39 
RJA C13   C14  SING N N 40 
RJA C13   H13  SING N N 41 
RJA C14   C15  DOUB N E 42 
RJA C14   H14  SING N N 43 
RJA C15   C16  SING N N 44 
RJA C15   H15  SING N N 45 
RJA C16   C17  SING N N 46 
RJA C16   H16  SING N N 47 
RJA C17   C18  SING N N 48 
RJA C17   H17  SING N N 49 
RJA C18   C19  SING N N 50 
RJA C18   H18  SING N N 51 
RJA C18   H18A SING N N 52 
RJA C20   C19  SING N N 53 
RJA C19   H19  SING N N 54 
RJA C21   C20  SING N N 55 
RJA C28   C20  SING N N 56 
RJA C20   H20  SING N N 57 
RJA C22   C21  SING N N 58 
RJA C21   H21  SING N N 59 
RJA C23   C22  DOUB N E 60 
RJA C22   H22  SING N N 61 
RJA C24   C23  SING N N 62 
RJA C23   H23  SING N N 63 
RJA C24   H24  SING N N 64 
RJA C24   H24A SING N N 65 
RJA C24   H24B SING N N 66 
RJA C25   H25  SING N N 67 
RJA C25   H25A SING N N 68 
RJA C25   H25B SING N N 69 
RJA C26   H26  SING N N 70 
RJA C26   H26A SING N N 71 
RJA C26   H26B SING N N 72 
RJA C27   H27  SING N N 73 
RJA C27   H27A SING N N 74 
RJA C27   H27B SING N N 75 
RJA C28   H28  SING N N 76 
RJA C28   H28A SING N N 77 
RJA C28   H28B SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RJA SMILES           ACDLabs              12.01 "O=C(O)CCCC(O)/C=C/C(=C\C(C)CC(=C\C=C\C(O)C1OC(/C=C/C)C(C(O)C1)C)\C)C"                                                                                                                                                                                      
RJA InChI            InChI                1.03  "InChI=1S/C28H44O6/c1-6-9-26-22(5)25(31)18-27(34-26)24(30)12-7-10-19(2)16-21(4)17-20(3)14-15-23(29)11-8-13-28(32)33/h6-7,9-10,12,14-15,17,21-27,29-31H,8,11,13,16,18H2,1-5H3,(H,32,33)/b9-6+,12-7+,15-14+,19-10+,20-17-/t21-,22+,23-,24-,25-,26+,27-/m1/s1" 
RJA InChIKey         InChI                1.03  SSWVBXXPYARFKL-PUAIALDQSA-N                                                                                                                                                                                                                                 
RJA SMILES_CANONICAL CACTVS               3.370 "C\C=C\[C@@H]1O[C@H](C[C@@H](O)[C@@H]1C)[C@H](O)/C=C/C=C(C)/C[C@@H](C)/C=C(C)\C=C\[C@H](O)CCCC(O)=O"                                                                                                                                                        
RJA SMILES           CACTVS               3.370 "CC=C[CH]1O[CH](C[CH](O)[CH]1C)[CH](O)C=CC=C(C)C[CH](C)C=C(C)C=C[CH](O)CCCC(O)=O"                                                                                                                                                                           
RJA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C/C=C/[C@H]1[C@H]([C@@H](C[C@@H](O1)[C@@H](/C=C/C=C(\C)/C[C@@H](C)/C=C(/C)\C=C\[C@@H](CCCC(=O)O)O)O)O)C"                                                                                                                                                   
RJA SMILES           "OpenEye OEToolkits" 1.7.6 "CC=CC1C(C(CC(O1)C(C=CC=C(C)CC(C)C=C(C)C=CC(CCCC(=O)O)O)O)O)C"                                                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RJA "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,5R)-1,5-anhydro-5-[(1R,2E,4E,7R,8Z,10E,12R)-15-carboxy-1,12-dihydroxy-5,7,9-trimethylpentadeca-2,4,8,10-tetraen-1-yl]-2,4-dideoxy-2-methyl-1-[(1E)-prop-1-en-1-yl]-D-threo-pentitol" 
RJA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(5R,6E,8Z,10R,12E,14E,16R)-8,10,12-trimethyl-16-[(2R,4R,5S,6S)-5-methyl-4-oxidanyl-6-[(E)-prop-1-enyl]oxan-2-yl]-5,16-bis(oxidanyl)hexadeca-6,8,12,14-tetraenoic acid"                   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RJA "Create component"   2012-10-11 RCSB 
RJA "Other modification" 2012-11-14 RCSB 
RJA "Initial release"    2013-01-04 RCSB 
RJA "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            RJA 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
