data_RCA
#

_chem_comp.id                                   RCA
_chem_comp.name                                 "6-{[4-(HYDROXYMETHYL)-5-METHYL-2,6-DIOXOHEXAHYDROPYRIMIDIN-5-YL]METHYL}-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H16 N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "HYDROXYMETHYL-HYDROTHYMYL-THYMINE; 5-[THYMIN-6-YL]METHYL-6-HYDRO-6-HYDROXYMETHYL-THYMINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2000-05-24
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       296.279
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RCA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1E2N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RCA  O2    O2    O  0  1  N  N  N  42.934  35.023   1.953   1.374  -1.124   4.306  O2    RCA   1  
RCA  C3    C3    C  0  1  Y  N  N  45.278  35.549   1.500   1.160  -0.147   2.250  C3    RCA   2  
RCA  C4    C4    C  0  1  N  N  N  45.340  36.685   2.457   2.541  -0.566   1.818  C4    RCA   3  
RCA  C5    C5    C  0  1  Y  N  N  46.369  35.185   0.761   0.365   0.555   1.415  C5    RCA   4  
RCA  C1    C1    C  0  1  Y  N  N  45.099  33.361  -0.309  -1.332   0.599   3.050  C1    RCA   5  
RCA  N1    N1    N  0  1  Y  N  N  46.296  34.107  -0.138  -0.886   0.927   1.823  N1    RCA   6  
RCA  C2    C2    C  0  1  Y  N  N  44.004  34.827   1.377   0.675  -0.490   3.536  C2    RCA   7  
RCA  N2    N2    N  0  1  Y  N  N  43.964  33.731   0.449  -0.561  -0.100   3.902  N2    RCA   8  
RCA  O1    O1    O  0  1  N  N  N  45.079  32.427  -1.103  -2.448   0.940   3.392  O1    RCA   9  
RCA  C11   C11   C  0  1  N  N  R  50.094  35.838   1.750   1.065   0.142  -2.323  C11   RCA  10  
RCA  O4    O4    O  0  1  N  N  N  52.317  32.959   1.719  -1.410  -1.563  -4.205  O4    RCA  11  
RCA  O3    O3    O  0  1  N  N  N  48.724  33.612  -0.821  -1.761   0.253  -0.190  O3    RCA  12  
RCA  N4    N4    N  0  1  N  N  N  51.155  34.887   2.222   0.423  -0.684  -3.347  N4    RCA  13  
RCA  C10   C10   C  0  1  N  N  N  51.457  33.772   1.401  -0.888  -0.963  -3.286  C10   RCA  14  
RCA  C12   C12   C  0  1  N  N  N  50.710  36.752   0.648   0.874   1.620  -2.668  C12   RCA  15  
RCA  O5    O5    O  0  1  N  N  N  50.660  38.072   1.132   1.464   1.893  -3.940  O5    RCA  16  
RCA  C7    C7    C  0  1  N  N  R  48.896  34.979   1.220   0.433  -0.150  -0.960  C7    RCA  17  
RCA  N3    N3    N  0  1  N  N  N  50.696  33.557   0.205  -1.637  -0.595  -2.234  N3    RCA  18  
RCA  C9    C9    C  0  1  N  N  N  49.424  34.159   0.024  -1.068  -0.149  -1.099  C9    RCA  19  
RCA  C6    C6    C  0  1  N  N  N  47.709  35.884   0.852   0.855   0.928   0.039  C6    RCA  20  
RCA  C8    C8    C  0  1  N  N  N  48.508  33.995   2.321   0.900  -1.519  -0.463  C8    RCA  21  
RCA  H43   3H4   H  0  1  N  N  N  44.450  36.981   3.059   3.058  -1.033   2.656  H43   RCA  22  
RCA  H42   2H4   H  0  1  N  N  N  46.185  36.498   3.159   2.465  -1.278   0.996  H42   RCA  23  
RCA  H41   1H4   H  0  1  N  N  N  45.696  37.584   1.902   3.100   0.309   1.489  H41   RCA  24  
RCA  H1    H1    H  0  1  N  N  N  47.042  33.452   0.096  -1.457   1.432   1.223  H1    RCA  25  
RCA  H2    H2    H  0  1  N  N  N  43.102  33.198   0.324  -0.899  -0.328   4.783  H2    RCA  26  
RCA  H11   H11   H  0  1  N  N  N  49.718  36.501   2.563   2.130  -0.087  -2.286  H11   RCA  27  
RCA  H4    H4    H  0  1  N  N  N  50.919  34.559   3.158   0.953  -1.034  -4.080  H4    RCA  28  
RCA  H122  2H12  H  0  0  N  N  N  51.734  36.437   0.340  -0.190   1.850  -2.704  H122  RCA  29  
RCA  H121  1H12  H  0  0  N  N  N  50.219  36.631  -0.345   1.352   2.235  -1.906  H121  RCA  30  
RCA  H5    H5    H  0  1  N  N  N  51.035  38.629   0.460   1.322   2.833  -4.119  H5    RCA  31  
RCA  H3    H3    H  0  1  N  N  N  51.068  32.961  -0.534  -2.604  -0.652  -2.293  H3    RCA  32  
RCA  H62   2H6   H  0  1  N  N  N  47.922  36.429  -0.096   0.422   1.884  -0.253  H62   RCA  33  
RCA  H61   1H6   H  0  1  N  N  N  47.646  36.742   1.561   1.942   1.009   0.050  H61   RCA  34  
RCA  H83   3H8   H  0  1  N  N  N  47.655  33.383   1.943   0.574  -1.662   0.566  H83   RCA  35  
RCA  H82   2H8   H  0  1  N  N  N  49.366  33.373   2.669   0.472  -2.299  -1.092  H82   RCA  36  
RCA  H81   1H8   H  0  1  N  N  N  48.285  34.496   3.291   1.988  -1.571  -0.510  H81   RCA  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RCA  O2   C2    DOUB  N  N   1  
RCA  C3   C4    SING  N  N   2  
RCA  C3   C5    DOUB  Y  N   3  
RCA  C3   C2    SING  Y  N   4  
RCA  C4   H43   SING  N  N   5  
RCA  C4   H42   SING  N  N   6  
RCA  C4   H41   SING  N  N   7  
RCA  C5   N1    SING  Y  N   8  
RCA  C5   C6    SING  N  N   9  
RCA  C1   N1    SING  Y  N  10  
RCA  C1   N2    SING  Y  N  11  
RCA  C1   O1    DOUB  N  N  12  
RCA  N1   H1    SING  N  N  13  
RCA  C2   N2    SING  Y  N  14  
RCA  N2   H2    SING  N  N  15  
RCA  C11  N4    SING  N  N  16  
RCA  C11  C12   SING  N  N  17  
RCA  C11  C7    SING  N  N  18  
RCA  C11  H11   SING  N  N  19  
RCA  O4   C10   DOUB  N  N  20  
RCA  O3   C9    DOUB  N  N  21  
RCA  N4   C10   SING  N  N  22  
RCA  N4   H4    SING  N  N  23  
RCA  C10  N3    SING  N  N  24  
RCA  C12  O5    SING  N  N  25  
RCA  C12  H122  SING  N  N  26  
RCA  C12  H121  SING  N  N  27  
RCA  O5   H5    SING  N  N  28  
RCA  C7   C9    SING  N  N  29  
RCA  C7   C6    SING  N  N  30  
RCA  C7   C8    SING  N  N  31  
RCA  N3   C9    SING  N  N  32  
RCA  N3   H3    SING  N  N  33  
RCA  C6   H62   SING  N  N  34  
RCA  C6   H61   SING  N  N  35  
RCA  C8   H83   SING  N  N  36  
RCA  C8   H82   SING  N  N  37  
RCA  C8   H81   SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RCA  SMILES            ACDLabs               10.04  "O=C1NC(CO)C(C(=O)N1)(C)CC2=C(C(=O)NC(=O)N2)C"  
RCA  SMILES_CANONICAL  CACTVS                3.341  "CC1=C(C[C@]2(C)[C@H](CO)NC(=O)NC2=O)NC(=O)NC1=O"  
RCA  SMILES            CACTVS                3.341  "CC1=C(C[C]2(C)[CH](CO)NC(=O)NC2=O)NC(=O)NC1=O"  
RCA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC1=C(NC(=O)NC1=O)C[C@@]2([C@@H](NC(=O)NC2=O)CO)C"  
RCA  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1=C(NC(=O)NC1=O)CC2(C(NC(=O)NC2=O)CO)C"  
RCA  InChI             InChI                 1.03   "InChI=1S/C12H16N4O5/c1-5-6(13-10(20)15-8(5)18)3-12(2)7(4-17)14-11(21)16-9(12)19/h7,17H,3-4H2,1-2H3,(H2,13,15,18,20)(H2,14,16,19,21)/t7-,12+/m0/s1"  
RCA  InChIKey          InChI                 1.03   KBBKHMIEEMSXSM-JVXZTZIISA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RCA  "SYSTEMATIC NAME"  ACDLabs               10.04  "6-{[(4R,5R)-4-(hydroxymethyl)-5-methyl-2,6-dioxohexahydropyrimidin-5-yl]methyl}-5-methylpyrimidine-2,4(1H,3H)-dione"  
RCA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "6-[[(4R,5R)-4-(hydroxymethyl)-5-methyl-2,6-dioxo-1,3-diazinan-5-yl]methyl]-5-methyl-1H-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RCA  "Create component"   2000-05-24  EBI   
RCA  "Modify descriptor"  2011-06-04  RCSB  
RCA  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  RCA  HYDROXYMETHYL-HYDROTHYMYL-THYMINE                      ?  ?  
2  RCA  5-[THYMIN-6-YL]METHYL-6-HYDRO-6-HYDROXYMETHYL-THYMINE  ?  ?  
##
