data_PUA
#

_chem_comp.id                                   PUA
_chem_comp.name                                 "ADENYLATE-3'-PHOSPHATE-[[2'-DEOXY-URIDINE-5'-PHOSPHATE]-3'-PHOSPHATE]"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H27 N7 O20 P4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        U-PI-A-PI
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       797.348
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PUA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1QHC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PUA  PA      PA    P  0  1  N  N  S   9.177   9.853   2.100  -0.420   0.018    0.501  PA      PUA   1  
PUA  O1A     O1A   O  0  1  N  N  N   9.684  11.138   2.755  -1.964   0.226    0.094  O1A     PUA   2  
PUA  O2A     O2A   O  0  1  N  N  N   7.721   9.884   1.608   0.257   1.333    0.549  O2A     PUA   3  
PUA  "O5'"   O5*   O  0  1  N  N  N  10.149   9.539   0.881  -0.336  -0.681    1.948  "O5'"   PUA   4  
PUA  PB      PB    P  0  1  N  N  R   8.926   7.139   3.235   0.179  -0.160   -2.006  PB      PUA   5  
PUA  O1B     O1B   O  0  1  N  N  N   8.880   6.614   1.849  -1.374   0.050   -2.371  O1B     PUA   6  
PUA  O2B     O2B   O  0  1  N  N  N   9.764   6.440   4.235   0.848   1.156   -1.920  O2B     PUA   7  
PUA  O3A     O3A   O  0  1  N  N  N   9.399   8.659   3.136   0.300  -0.918   -0.591  O3A     PUA   8  
PUA  PG      PG    P  0  1  N  N  N  13.137  13.708   1.076  -3.850   1.427    5.159  PG      PUA   9  
PUA  O1G     O1G   O  0  1  N  N  N  13.831  12.514   1.733  -5.396   1.074    5.439  O1G     PUA  10  
PUA  O2G     O2G   O  0  1  N  N  N  14.119  14.669   0.409  -3.427   2.713    6.030  O2G     PUA  11  
PUA  O3G     O3G   O  0  1  N  N  N  12.137  14.385   2.014  -3.665   1.724    3.720  O3G     PUA  12  
PUA  N9A     N9A   N  0  1  Y  N  N  11.263  10.464  -3.412   1.654  -0.347    6.741  N9A     PUA  13  
PUA  C4A     C4A   C  0  1  Y  N  N   9.995  10.007  -3.658   2.133  -0.802    7.943  C4A     PUA  14  
PUA  N3A     N3A   N  0  1  Y  N  N   8.936  10.058  -2.818   1.666  -1.600    8.898  N3A     PUA  15  
PUA  C2A     C2A   C  0  1  Y  N  N   7.848   9.531  -3.391   2.385  -1.856    9.970  C2A     PUA  16  
PUA  N1A     N1A   N  0  1  Y  N  N   7.717   8.993  -4.627   3.588  -1.343   10.155  N1A     PUA  17  
PUA  C6A     C6A   C  0  1  Y  N  N   8.806   8.959  -5.449   4.137  -0.534    9.255  C6A     PUA  18  
PUA  N6A     N6A   N  0  1  N  N  N   8.670   8.429  -6.667   5.399  -0.001    9.458  N6A     PUA  19  
PUA  C5A     C5A   C  0  1  Y  N  N  10.024   9.492  -4.954   3.405  -0.226    8.096  C5A     PUA  20  
PUA  N7A     N7A   N  0  1  Y  N  N  11.295   9.621  -5.509   3.637   0.528    6.995  N7A     PUA  21  
PUA  C8A     C8A   C  0  1  Y  N  N  11.992  10.197  -4.556   2.609   0.461    6.200  C8A     PUA  22  
PUA  "C5'"   C5*   C  0  1  N  N  N  11.544   9.688   1.052  -0.990   0.193    2.869  "C5'"   PUA  23  
PUA  "C4'"   C4*   C  0  1  N  N  R  12.099  10.687   0.068  -0.945  -0.416    4.272  "C4'"   PUA  24  
PUA  "O4'"   O4*   O  0  1  N  N  N  12.147  10.133  -1.277   0.422  -0.575    4.707  "O4'"   PUA  25  
PUA  "C1'"   C1*   C  0  1  N  N  R  11.712  11.116  -2.184   0.354  -0.671    6.147  "C1'"   PUA  26  
PUA  "C2'"   C2*   C  0  1  N  N  R  10.649  11.881  -1.399  -0.703   0.374    6.565  "C2'"   PUA  27  
PUA  "O2'"   O2*   O  0  1  N  N  N  10.397  13.130  -2.002  -1.490  -0.109    7.655  "O2'"   PUA  28  
PUA  "C3'"   C3*   C  0  1  N  N  S  11.332  12.008  -0.042  -1.577   0.546    5.300  "C3'"   PUA  29  
PUA  "O3'"   O3*   O  0  1  N  N  N  12.258  13.105  -0.163  -2.930   0.173    5.571  "O3'"   PUA  30  
PUA  O5      O5    O  0  1  N  N  N   3.588   6.425   2.036  -2.133  -1.543   -6.508  O5      PUA  31  
PUA  C5      C5    C  0  1  N  N  N   3.818   7.388   3.086  -1.482  -0.791   -5.481  C5      PUA  32  
PUA  C4      C4    C  0  1  N  N  R   4.998   6.958   3.936  -0.003  -1.178   -5.425  C4      PUA  33  
PUA  O4      O4    O  0  1  N  N  N   4.717   5.660   4.521   0.645  -0.869   -6.680  O4      PUA  34  
PUA  C1      C1    C  0  1  N  N  R   5.678   4.699   4.100   2.055  -0.796   -6.374  C1      PUA  35  
PUA  C2      C2    C  0  1  N  N  N   6.374   5.300   2.891   2.126  -0.067   -5.015  C2      PUA  36  
PUA  C3      C3    C  0  1  N  N  S   6.304   6.794   3.151   0.743  -0.324   -4.377  C3      PUA  37  
PUA  O3      O3    O  0  1  N  N  N   7.448   7.248   3.893   0.883  -1.046   -3.151  O3      PUA  38  
PUA  PD      PD    P  0  1  N  N  N   2.961   6.862   0.596  -3.677  -1.088   -6.511  PD      PUA  39  
PUA  O1D     O1D   O  0  1  N  N  N   1.456   6.894   0.835  -4.474  -1.900   -7.649  O1D     PUA  40  
PUA  O2D     O2D   O  0  1  N  N  N   3.398   5.769  -0.381  -4.331  -1.399   -5.073  O2D     PUA  41  
PUA  O3D     O3D   O  0  1  N  N  N   3.517   8.246   0.269  -3.763   0.362   -6.788  O3D     PUA  42  
PUA  N1U     N1U   N  0  1  N  N  N   4.973   3.443   3.785   2.763  -0.030   -7.402  N1U     PUA  43  
PUA  C6U     C6U   C  0  1  N  N  N   3.826   3.434   2.981   3.825  -0.594   -8.057  C6U     PUA  44  
PUA  C2U     C2U   C  0  1  N  N  N   5.502   2.255   4.294   2.361   1.218   -7.698  C2U     PUA  45  
PUA  O2U     O2U   O  0  1  N  N  N   6.474   2.217   5.009   1.416   1.700   -7.104  O2U     PUA  46  
PUA  N3U     N3U   N  0  1  N  N  N   4.831   1.113   3.917   2.997   1.946   -8.635  N3U     PUA  47  
PUA  C4U     C4U   C  0  1  N  N  N   3.699   1.028   3.094   4.047   1.427   -9.302  C4U     PUA  48  
PUA  O4U     O4U   O  0  1  N  N  N   3.264  -0.087   2.775   4.620   2.083  -10.154  O4U     PUA  49  
PUA  C5U     C5U   C  0  1  N  N  N   3.191   2.299   2.626   4.477   0.111   -9.005  C5U     PUA  50  
PUA  H1A     H1A   H  0  1  N  N  N  10.583  11.118   3.059  -2.369  -0.651    0.075  H1A     PUA  51  
PUA  H1B     H1B   H  0  1  N  N  N   8.342   7.062   1.207  -1.772  -0.830   -2.417  H1B     PUA  52  
PUA  H1G     H1G   H  0  1  N  N  N  13.220  11.916   2.147  -5.912   1.849    5.179  H1G     PUA  53  
PUA  H2G     H2G   H  0  1  N  N  N  13.687  15.410   0.000  -3.563   2.478    6.959  H2G     PUA  54  
PUA  H2A     H2A   H  0  1  N  N  N   6.941   9.541  -2.762   1.977  -2.509   10.727  H2A     PUA  55  
PUA  H6A1    1H6A  H  0  0  N  N  N   9.483   8.403  -7.281   5.893  -0.218   10.265  H6A1    PUA  56  
PUA  H6A2    2H6A  H  0  0  N  N  N   7.905   8.900  -7.149   5.790   0.584    8.792  H6A2    PUA  57  
PUA  H8A     H8A   H  0  1  N  N  N  13.060  10.428  -4.699   2.524   0.971    5.252  H8A     PUA  58  
PUA  "H5'1"  1H5*  H  0  0  N  N  N  11.805   9.954   2.102  -2.028   0.330    2.566  "H5'1"  PUA  59  
PUA  "H5'2"  2H5*  H  0  0  N  N  N  12.074   8.709   0.990  -0.482   1.158    2.876  "H5'2"  PUA  60  
PUA  "H4'"   H4*   H  0  1  N  N  N  13.110  10.905   0.483  -1.461  -1.376    4.284  "H4'"   PUA  61  
PUA  "H1'"   H1*   H  0  1  N  N  N  12.486  11.834  -2.539   0.040  -1.670    6.446  "H1'"   PUA  62  
PUA  "H2'"   H2*   H  0  1  N  N  N   9.647  11.394  -1.345  -0.223   1.316    6.829  "H2'"   PUA  63  
PUA  "HO2'"  HO2*  H  0  0  N  N  N   9.735  13.606  -1.513  -0.894  -0.197    8.412  "HO2'"  PUA  64  
PUA  "H3'"   H3*   H  0  1  N  N  N  10.660  12.186   0.829  -1.531   1.574    4.940  "H3'"   PUA  65  
PUA  H51     1H5   H  0  1  N  N  N   3.946   8.420   2.685  -1.951  -1.006   -4.521  H51     PUA  66  
PUA  H52     2H5   H  0  1  N  N  N   2.903   7.563   3.699  -1.572   0.272   -5.699  H52     PUA  67  
PUA  H4      H4    H  0  1  N  N  N   5.132   7.767   4.690   0.102  -2.238   -5.194  H4      PUA  68  
PUA  H1      H1    H  0  1  N  N  N   6.438   4.459   4.879   2.477  -1.798   -6.290  H1      PUA  69  
PUA  H21     1H2   H  0  1  N  N  N   7.402   4.910   2.708   2.286   1.001   -5.163  H21     PUA  70  
PUA  H22     2H2   H  0  1  N  N  N   5.952   4.981   1.909   2.917  -0.490   -4.395  H22     PUA  71  
PUA  H3      H3    H  0  1  N  N  N   6.314   7.404   2.218   0.219   0.616   -4.207  H3      PUA  72  
PUA  HD1     HD1   H  0  1  N  N  N   1.090   7.148  -0.004  -5.392  -1.599   -7.617  HD1     PUA  73  
PUA  HD2     HD2   H  0  1  N  N  N   3.032   6.023  -1.220  -4.255  -2.353   -4.931  HD2     PUA  74  
PUA  H6U     H6U   H  0  1  N  N  N   3.396   4.377   2.604   4.139  -1.599   -7.816  H6U     PUA  75  
PUA  H3U     H3U   H  0  1  N  N  N   5.211   0.241   4.284   2.696   2.847   -8.833  H3U     PUA  76  
PUA  H5U     H5U   H  0  1  N  N  N   2.300   2.405   1.984   5.317  -0.321   -9.529  H5U     PUA  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PUA  PA     O1A     SING  N  N   1  
PUA  PA     O2A     DOUB  N  N   2  
PUA  PA     "O5'"   SING  N  N   3  
PUA  PA     O3A     SING  N  N   4  
PUA  O1A    H1A     SING  N  N   5  
PUA  "O5'"  "C5'"   SING  N  N   6  
PUA  PB     O1B     SING  N  N   7  
PUA  PB     O2B     DOUB  N  N   8  
PUA  PB     O3A     SING  N  N   9  
PUA  PB     O3      SING  N  N  10  
PUA  O1B    H1B     SING  N  N  11  
PUA  PG     O1G     SING  N  N  12  
PUA  PG     O2G     SING  N  N  13  
PUA  PG     O3G     DOUB  N  N  14  
PUA  PG     "O3'"   SING  N  N  15  
PUA  O1G    H1G     SING  N  N  16  
PUA  O2G    H2G     SING  N  N  17  
PUA  N9A    C4A     SING  Y  N  18  
PUA  N9A    C8A     SING  Y  N  19  
PUA  N9A    "C1'"   SING  N  N  20  
PUA  C4A    N3A     SING  Y  N  21  
PUA  C4A    C5A     DOUB  Y  N  22  
PUA  N3A    C2A     DOUB  Y  N  23  
PUA  C2A    N1A     SING  Y  N  24  
PUA  C2A    H2A     SING  N  N  25  
PUA  N1A    C6A     DOUB  Y  N  26  
PUA  C6A    N6A     SING  N  N  27  
PUA  C6A    C5A     SING  Y  N  28  
PUA  N6A    H6A1    SING  N  N  29  
PUA  N6A    H6A2    SING  N  N  30  
PUA  C5A    N7A     SING  Y  N  31  
PUA  N7A    C8A     DOUB  Y  N  32  
PUA  C8A    H8A     SING  N  N  33  
PUA  "C5'"  "C4'"   SING  N  N  34  
PUA  "C5'"  "H5'1"  SING  N  N  35  
PUA  "C5'"  "H5'2"  SING  N  N  36  
PUA  "C4'"  "O4'"   SING  N  N  37  
PUA  "C4'"  "C3'"   SING  N  N  38  
PUA  "C4'"  "H4'"   SING  N  N  39  
PUA  "O4'"  "C1'"   SING  N  N  40  
PUA  "C1'"  "C2'"   SING  N  N  41  
PUA  "C1'"  "H1'"   SING  N  N  42  
PUA  "C2'"  "O2'"   SING  N  N  43  
PUA  "C2'"  "C3'"   SING  N  N  44  
PUA  "C2'"  "H2'"   SING  N  N  45  
PUA  "O2'"  "HO2'"  SING  N  N  46  
PUA  "C3'"  "O3'"   SING  N  N  47  
PUA  "C3'"  "H3'"   SING  N  N  48  
PUA  O5     C5      SING  N  N  49  
PUA  O5     PD      SING  N  N  50  
PUA  C5     C4      SING  N  N  51  
PUA  C5     H51     SING  N  N  52  
PUA  C5     H52     SING  N  N  53  
PUA  C4     O4      SING  N  N  54  
PUA  C4     C3      SING  N  N  55  
PUA  C4     H4      SING  N  N  56  
PUA  O4     C1      SING  N  N  57  
PUA  C1     C2      SING  N  N  58  
PUA  C1     N1U     SING  N  N  59  
PUA  C1     H1      SING  N  N  60  
PUA  C2     C3      SING  N  N  61  
PUA  C2     H21     SING  N  N  62  
PUA  C2     H22     SING  N  N  63  
PUA  C3     O3      SING  N  N  64  
PUA  C3     H3      SING  N  N  65  
PUA  PD     O1D     SING  N  N  66  
PUA  PD     O2D     SING  N  N  67  
PUA  PD     O3D     DOUB  N  N  68  
PUA  O1D    HD1     SING  N  N  69  
PUA  O2D    HD2     SING  N  N  70  
PUA  N1U    C6U     SING  N  N  71  
PUA  N1U    C2U     SING  N  N  72  
PUA  C6U    C5U     DOUB  N  N  73  
PUA  C6U    H6U     SING  N  N  74  
PUA  C2U    O2U     DOUB  N  N  75  
PUA  C2U    N3U     SING  N  N  76  
PUA  N3U    C4U     SING  N  N  77  
PUA  N3U    H3U     SING  N  N  78  
PUA  C4U    O4U     DOUB  N  N  79  
PUA  C4U    C5U     SING  N  N  80  
PUA  C5U    H5U     SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PUA  SMILES            ACDLabs               10.04  "O=C1C=CN(C(=O)N1)C5OC(COP(=O)(O)O)C(OP(=O)(O)OP(=O)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4OP(=O)(O)O)C5"  
PUA  SMILES_CANONICAL  CACTVS                3.341  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[C@H]4C[C@@H](O[C@@H]4CO[P](O)(O)=O)N5C=CC(=O)NC5=O)[C@@H](O[P](O)(O)=O)[C@H]3O"  
PUA  SMILES            CACTVS                3.341  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]4C[CH](O[CH]4CO[P](O)(O)=O)N5C=CC(=O)NC5=O)[CH](O[P](O)(O)=O)[CH]3O"  
PUA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)O[C@H]4C[C@@H](O[C@@H]4COP(=O)(O)O)N5C=CC(=O)NC5=O)OP(=O)(O)O)O)N"  
PUA  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OC4CC(OC4COP(=O)(O)O)N5C=CC(=O)NC5=O)OP(=O)(O)O)O)N"  
PUA  InChI             InChI                 1.03   "InChI=1S/C19H27N7O20P4/c20-16-13-17(22-6-21-16)26(7-23-13)18-14(28)15(45-48(33,34)35)10(43-18)5-41-49(36,37)46-50(38,39)44-8-3-12(25-2-1-11(27)24-19(25)29)42-9(8)4-40-47(30,31)32/h1-2,6-10,12,14-15,18,28H,3-5H2,(H,36,37)(H,38,39)(H2,20,21,22)(H,24,27,29)(H2,30,31,32)(H2,33,34,35)/t8-,9+,10+,12+,14+,15+,18+/m0/s1"  
PUA  InChIKey          InChI                 1.03   JIAJERGOUFOENU-LNAOLWRRSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PUA  "SYSTEMATIC NAME"  ACDLabs               10.04  "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (2R,3S,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2-[(phosphonooxy)methyl]tetrahydrofuran-3-yl dihydrogen diphosphate (non-preferred name)"  
PUA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methyl [[(2R,3S,5R)-5-(2,4-dioxopyrimidin-1-yl)-2-(phosphonooxymethyl)oxolan-3-yl]oxy-hydroxy-phosphoryl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PUA  "Create component"   1999-07-08  EBI   
PUA  "Modify descriptor"  2011-06-04  RCSB  
PUA  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PUA
_pdbx_chem_comp_synonyms.name        U-PI-A-PI
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
