data_ONA
#

_chem_comp.id                                   ONA
_chem_comp.name                                 "3'-O-[2-(METHYLAMINO)BENZOYL]ADENOSINE 5'-(TETRAHYDROGEN TRIPHOSPHATE)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H23 N6 O14 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2'(3')-O-(N-METHYLANTHRANILOYL)-ADENOSINE 5'-TRIPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-05-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       640.328
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ONA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2GVZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ONA  CA7     CA7   C  0  1  N  N  N  66.475  -13.831  54.267  -6.273   5.409   2.065  CA7     ONA   1  
ONA  NA1     NA1   N  0  1  N  N  N  65.090  -14.260  54.589  -5.491   4.378   1.379  NA1     ONA   2  
ONA  CA6     CA6   C  0  1  Y  N  N  64.628  -15.497  54.949  -5.136   4.546   0.047  CA6     ONA   3  
ONA  CA5     CA5   C  0  1  Y  N  N  65.633  -16.721  55.068  -5.620   5.633  -0.672  CA5     ONA   4  
ONA  CA4     CA4   C  0  1  Y  N  N  65.005  -18.167  55.288  -5.266   5.798  -1.995  CA4     ONA   5  
ONA  CA3     CA3   C  0  1  Y  N  N  63.510  -18.206  55.756  -4.428   4.885  -2.618  CA3     ONA   6  
ONA  CA2     CA2   C  0  1  Y  N  N  62.708  -16.875  55.575  -3.939   3.802  -1.921  CA2     ONA   7  
ONA  CA1     CA1   C  0  1  Y  N  N  63.225  -15.628  55.204  -4.283   3.624  -0.578  CA1     ONA   8  
ONA  CA      CA    C  0  1  N  N  N  62.201  -14.479  55.109  -3.758   2.471   0.174  CA      ONA   9  
ONA  OA      OA    O  0  1  N  N  N  62.203  -13.399  56.061  -4.141   2.260   1.308  OA      ONA  10  
ONA  "O3'"   O3*   O  0  1  N  N  N  61.307  -14.582  54.078  -2.852   1.651  -0.394  "O3'"   ONA  11  
ONA  "C3'"   C3*   C  0  1  N  N  S  60.313  -13.554  53.683  -2.379   0.536   0.406  "C3'"   ONA  12  
ONA  "C2'"   C2*   C  0  1  N  N  R  59.556  -14.096  52.481  -3.252  -0.715   0.161  "C2'"   ONA  13  
ONA  "O2'"   O2*   O  0  1  N  N  N  60.447  -14.710  51.547  -4.284  -0.429  -0.786  "O2'"   ONA  14  
ONA  "C4'"   C4*   C  0  1  N  N  R  59.171  -13.413  54.686  -0.967   0.104  -0.049  "C4'"   ONA  15  
ONA  "C5'"   C5*   C  0  1  N  N  N  58.405  -12.048  54.874   0.097   0.710   0.868  "C5'"   ONA  16  
ONA  "O5'"   O5*   O  0  1  N  N  N  58.783  -10.919  54.395   1.396   0.395   0.363  "O5'"   ONA  17  
ONA  PA      PA    P  0  1  N  N  R  57.536   -9.879  54.544   2.755   0.875   1.080  PA      ONA  18  
ONA  O3A     O3A   O  0  1  N  N  N  58.055   -8.788  53.543   2.733   2.346   1.246  O3A     ONA  19  
ONA  O2A     O2A   O  0  1  N  N  N  56.228  -10.484  54.233   2.876   0.174   2.524  O2A     ONA  20  
ONA  O1A     O1A   O  0  1  N  N  N  57.773   -9.635  56.079   4.017   0.456   0.173  O1A     ONA  21  
ONA  PB      PB    P  0  1  N  N  R  56.789   -8.960  57.077   5.569   0.884   0.150  PB      ONA  22  
ONA  O3B     O3B   O  0  1  N  N  N  55.616  -10.068  56.929   6.098   0.895   1.532  O3B     ONA  23  
ONA  O2B     O2B   O  0  1  N  N  N  56.128   -7.593  56.890   5.712   2.353  -0.491  O2B     ONA  24  
ONA  O1B     O1B   O  0  1  N  N  N  57.688   -9.353  58.265   6.404  -0.171  -0.735  O1B     ONA  25  
ONA  PG      PG    P  0  1  N  N  N  58.456   -8.158  58.876   7.962  -0.565  -0.832  PG      ONA  26  
ONA  O3G     O3G   O  0  1  N  N  N  58.949   -7.155  57.684   8.520  -0.707   0.531  O3G     ONA  27  
ONA  O1G     O1G   O  0  1  N  N  N  57.355   -7.464  59.843   8.115  -1.959  -1.623  O1G     ONA  28  
ONA  O2G     O2G   O  0  1  N  N  N  59.630   -8.654  59.639   8.759   0.590  -1.621  O2G     ONA  29  
ONA  "O4'"   O4*   O  0  1  N  N  N  58.163  -14.444  54.343  -0.968  -1.336   0.064  "O4'"   ONA  30  
ONA  "C1'"   C1*   C  0  1  N  N  R  58.619  -15.115  53.132  -2.264  -1.755  -0.414  "C1'"   ONA  31  
ONA  N9      N9    N  0  1  Y  N  N  57.475  -15.550  52.253  -2.585  -3.094   0.088  N9      ONA  32  
ONA  C8      C8    C  0  1  Y  N  N  57.203  -16.836  51.936  -2.022  -3.706   1.169  C8      ONA  33  
ONA  N7      N7    N  0  1  Y  N  N  56.140  -16.894  51.130  -2.541  -4.889   1.329  N7      ONA  34  
ONA  C5      C5    C  0  1  Y  N  N  55.723  -15.653  50.925  -3.466  -5.111   0.365  C5      ONA  35  
ONA  C4      C4    C  0  1  Y  N  N  56.574  -14.778  51.644  -3.510  -3.959  -0.439  C4      ONA  36  
ONA  N3      N3    N  0  1  Y  N  N  56.395  -13.419  51.625  -4.353  -3.920  -1.465  N3      ONA  37  
ONA  C2      C2    C  0  1  Y  N  N  55.410  -12.808  50.933  -5.141  -4.942  -1.726  C2      ONA  38  
ONA  N1      N1    N  0  1  Y  N  N  54.516  -13.624  50.183  -5.138  -6.043  -0.998  N1      ONA  39  
ONA  C6      C6    C  0  1  Y  N  N  54.675  -15.060  50.177  -4.322  -6.177   0.043  C6      ONA  40  
ONA  N6      N6    N  0  1  N  N  N  53.836  -15.819  49.470  -4.328  -7.334   0.802  N6      ONA  41  
ONA  HA71    1HA7  H  0  0  N  N  N  67.187  -14.585  54.634  -5.721   6.349   2.056  HA71    ONA  42  
ONA  HA72    2HA7  H  0  0  N  N  N  66.681  -12.865  54.751  -7.226   5.543   1.554  HA72    ONA  43  
ONA  HA73    3HA7  H  0  0  N  N  N  66.583  -13.725  53.177  -6.453   5.103   3.095  HA73    ONA  44  
ONA  HA1     HA1   H  0  1  N  N  N  64.847  -13.686  55.371  -5.221   3.577   1.855  HA1     ONA  45  
ONA  HA5     HA5   H  0  1  N  N  N  66.701  -16.578  55.002  -6.273   6.348  -0.195  HA5     ONA  46  
ONA  HA4     HA4   H  0  1  N  N  N  65.576  -19.069  55.124  -5.645   6.643  -2.550  HA4     ONA  47  
ONA  HA3     HA3   H  0  1  N  N  N  63.062  -19.094  56.176  -4.158   5.024  -3.654  HA3     ONA  48  
ONA  HA2     HA2   H  0  1  N  N  N  61.644  -16.923  55.755  -3.287   3.094  -2.411  HA2     ONA  49  
ONA  "H3'"   H3*   H  0  1  N  N  N  60.876  -12.618  53.553  -2.378   0.799   1.464  "H3'"   ONA  50  
ONA  H1      H1    H  0  1  N  N  N  59.028  -13.328  51.897  -3.682  -1.071   1.097  H1      ONA  51  
ONA  "H2'"   H2*   H  0  1  N  N  N  59.997  -14.846  50.722  -4.862  -1.180  -0.977  "H2'"   ONA  52  
ONA  "H4'"   H4*   H  0  1  N  N  N  59.694  -13.510  55.649  -0.793   0.404  -1.082  "H4'"   ONA  53  
ONA  "H5'1"  1H5*  H  0  0  N  N  N  58.547  -11.876  55.951  -0.027   1.793   0.902  "H5'1"  ONA  54  
ONA  "H5'2"  2H5*  H  0  0  N  N  N  57.416  -12.222  54.426  -0.012   0.300   1.872  "H5'2"  ONA  55  
ONA  H2A     H2A   H  0  1  N  N  N  55.740  -10.614  55.037   2.896  -0.792   2.492  H2A     ONA  56  
ONA  H2B     H2B   H  0  1  N  N  N  55.991   -7.188  57.738   5.384   2.420  -1.399  H2B     ONA  57  
ONA  H1G     H1G   H  0  1  N  N  N  57.731   -7.328  60.705   9.030  -2.258  -1.719  H1G     ONA  58  
ONA  H2G     H2G   H  0  1  N  N  N  60.369   -8.760  59.051   8.446   0.738  -2.524  H2G     ONA  59  
ONA  "H1'"   H1*   H  0  1  N  N  N  59.139  -16.063  53.334  -2.290  -1.742  -1.503  "H1'"   ONA  60  
ONA  H8      H8    H  0  1  N  N  N  57.764  -17.691  52.284  -1.259  -3.274   1.798  H8      ONA  61  
ONA  H2      H2    H  0  1  N  N  N  55.303  -11.733  50.948  -5.815  -4.877  -2.568  H2      ONA  62  
ONA  HN61    1HN6  H  0  0  N  N  N  53.575  -15.337  48.634  -3.736  -7.416   1.567  HN61    ONA  63  
ONA  HN62    2HN6  H  0  0  N  N  N  53.019  -16.009  50.014  -4.924  -8.064   0.570  HN62    ONA  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ONA  CA7    NA1     SING  N  N   1  
ONA  CA7    HA71    SING  N  N   2  
ONA  CA7    HA72    SING  N  N   3  
ONA  CA7    HA73    SING  N  N   4  
ONA  NA1    CA6     SING  N  N   5  
ONA  NA1    HA1     SING  N  N   6  
ONA  CA6    CA5     SING  Y  N   7  
ONA  CA6    CA1     DOUB  Y  N   8  
ONA  CA5    CA4     DOUB  Y  N   9  
ONA  CA5    HA5     SING  N  N  10  
ONA  CA4    CA3     SING  Y  N  11  
ONA  CA4    HA4     SING  N  N  12  
ONA  CA3    CA2     DOUB  Y  N  13  
ONA  CA3    HA3     SING  N  N  14  
ONA  CA2    CA1     SING  Y  N  15  
ONA  CA2    HA2     SING  N  N  16  
ONA  CA1    CA      SING  N  N  17  
ONA  CA     OA      DOUB  N  N  18  
ONA  CA     "O3'"   SING  N  N  19  
ONA  "O3'"  "C3'"   SING  N  N  20  
ONA  "C3'"  "C2'"   SING  N  N  21  
ONA  "C3'"  "C4'"   SING  N  N  22  
ONA  "C3'"  "H3'"   SING  N  N  23  
ONA  "C2'"  "O2'"   SING  N  N  24  
ONA  "C2'"  "C1'"   SING  N  N  25  
ONA  "C2'"  H1      SING  N  N  26  
ONA  "O2'"  "H2'"   SING  N  N  27  
ONA  "C4'"  "C5'"   SING  N  N  28  
ONA  "C4'"  "O4'"   SING  N  N  29  
ONA  "C4'"  "H4'"   SING  N  N  30  
ONA  "C5'"  "O5'"   SING  N  N  31  
ONA  "C5'"  "H5'1"  SING  N  N  32  
ONA  "C5'"  "H5'2"  SING  N  N  33  
ONA  "O5'"  PA      SING  N  N  34  
ONA  PA     O3A     DOUB  N  N  35  
ONA  PA     O2A     SING  N  N  36  
ONA  PA     O1A     SING  N  N  37  
ONA  O2A    H2A     SING  N  N  38  
ONA  O1A    PB      SING  N  N  39  
ONA  PB     O3B     DOUB  N  N  40  
ONA  PB     O2B     SING  N  N  41  
ONA  PB     O1B     SING  N  N  42  
ONA  O2B    H2B     SING  N  N  43  
ONA  O1B    PG      SING  N  N  44  
ONA  PG     O3G     DOUB  N  N  45  
ONA  PG     O1G     SING  N  N  46  
ONA  PG     O2G     SING  N  N  47  
ONA  O1G    H1G     SING  N  N  48  
ONA  O2G    H2G     SING  N  N  49  
ONA  "O4'"  "C1'"   SING  N  N  50  
ONA  "C1'"  N9      SING  N  N  51  
ONA  "C1'"  "H1'"   SING  N  N  52  
ONA  N9     C8      SING  Y  N  53  
ONA  N9     C4      SING  Y  N  54  
ONA  C8     N7      DOUB  Y  N  55  
ONA  C8     H8      SING  N  N  56  
ONA  N7     C5      SING  Y  N  57  
ONA  C5     C4      SING  Y  N  58  
ONA  C5     C6      DOUB  Y  N  59  
ONA  C4     N3      DOUB  Y  N  60  
ONA  N3     C2      SING  Y  N  61  
ONA  C2     N1      DOUB  Y  N  62  
ONA  C2     H2      SING  N  N  63  
ONA  N1     C6      SING  Y  N  64  
ONA  C6     N6      SING  N  N  65  
ONA  N6     HN61    SING  N  N  66  
ONA  N6     HN62    SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ONA  SMILES            ACDLabs               10.04  "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC4OC(n2cnc1c(ncnc12)N)C(O)C4OC(=O)c3ccccc3NC"  
ONA  InChI             InChI                 1.03   "InChI=1S/C18H23N6O14P3/c1-20-10-5-3-2-4-9(10)18(26)36-14-11(6-34-40(30,31)38-41(32,33)37-39(27,28)29)35-17(13(14)25)24-8-23-12-15(19)21-7-22-16(12)24/h2-5,7-8,11,13-14,17,20,25H,6H2,1H3,(H,30,31)(H,32,33)(H2,19,21,22)(H2,27,28,29)/t11-,13-,14-,17-/m1/s1"  
ONA  InChIKey          InChI                 1.03   YAPJXKKTHXODSV-LSCFUAHRSA-N  
ONA  SMILES_CANONICAL  CACTVS                3.385  "CNc1ccccc1C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n3cnc4c(N)ncnc34"  
ONA  SMILES            CACTVS                3.385  "CNc1ccccc1C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n3cnc4c(N)ncnc34"  
ONA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "CNc1ccccc1C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3ncnc4N)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O"  
ONA  SMILES            "OpenEye OEToolkits"  1.7.5  "CNc1ccccc1C(=O)OC2C(OC(C2O)n3cnc4c3ncnc4N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ONA  "SYSTEMATIC NAME"  ACDLabs               10.04  "3'-O-{[2-(methylamino)phenyl]carbonyl}adenosine 5'-(tetrahydrogen triphosphate)"  
ONA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-[[hydroxy-(hydroxy-phosphonooxy-phosphoryl)oxy-phosphoryl]oxymethyl]oxolan-3-yl] 2-methylaminobenzoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ONA  "Create component"    2006-05-08  RCSB  
ONA  "Modify descriptor"   2011-06-04  RCSB  
ONA  "Modify descriptor"   2012-01-05  RCSB  
ONA  "Modify coordinates"  2012-01-05  RCSB  
ONA  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     ONA
_pdbx_chem_comp_synonyms.name        "2'(3')-O-(N-METHYLANTHRANILOYL)-ADENOSINE 5'-TRIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
