data_N2A
# 
_chem_comp.id                                    N2A 
_chem_comp.name                                  "N-[2-chloro-5-(1-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-6-oxo-1,6-dihydropyrimidin-5-yl)benzyl]-4-fluorobenzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H33 Cl2 F N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-04-29 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        663.569 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N2A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3MPE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N2A C1   C1   C  0 1 Y N N -10.481 9.278  -79.524 10.109  2.395  -0.633 C1   N2A 1  
N2A C2   C2   C  0 1 Y N N -9.612  8.539  -80.314 9.017   1.549  -0.668 C2   N2A 2  
N2A C3   C3   C  0 1 Y N N -8.353  8.215  -79.824 8.679   0.812  0.457  C3   N2A 3  
N2A C4   C4   C  0 1 Y N N -7.958  8.665  -78.460 9.443   0.928  1.620  C4   N2A 4  
N2A C5   C5   C  0 1 Y N N -8.865  9.401  -77.709 10.537  1.780  1.646  C5   N2A 5  
N2A C6   C6   C  0 1 Y N N -10.116 9.703  -78.248 10.867  2.510  0.521  C6   N2A 6  
N2A N13  N13  N  0 1 N N N -6.717  8.221  -78.249 8.869   0.079  2.564  N13  N2A 7  
N2A C14  C14  C  0 1 N N N -6.385  7.571  -79.365 7.805   -0.524 2.001  C14  N2A 8  
N2A N15  N15  N  0 1 N N N -7.319  7.544  -80.327 7.665   -0.102 0.730  N15  N2A 9  
N2A C20  C20  C  0 1 N N N -7.285  6.918  -81.676 6.623   -0.532 -0.205 C20  N2A 10 
N2A C22  C22  C  0 1 N N N -5.894  8.409  -77.032 9.342   -0.122 3.936  C22  N2A 11 
N2A CL24 CL24 CL 0 0 N N N -12.100 9.697  -80.169 10.538  3.314  -2.043 CL24 N2A 12 
N2A C26  C26  C  0 1 N N N -5.934  7.098  -82.362 6.716   -2.046 -0.415 C26  N2A 13 
N2A C27  C27  C  0 1 N N N -6.013  6.542  -83.776 5.588   -2.498 -1.345 C27  N2A 14 
N2A N28  N28  N  0 1 N N N -6.526  5.175  -83.689 4.292   -2.147 -0.751 N28  N2A 15 
N2A C29  C29  C  0 1 N N N -6.790  4.522  -82.405 4.160   -0.694 -0.584 C29  N2A 16 
N2A C30  C30  C  0 1 N N N -7.657  5.445  -81.559 5.246   -0.189 0.369  C30  N2A 17 
N2A C37  C37  C  0 1 N N N -6.794  4.480  -84.932 3.183   -2.688 -1.549 C37  N2A 18 
N2A C39  C39  C  0 1 N N N -6.077  3.132  -84.892 1.872   -2.522 -0.778 C39  N2A 19 
N2A C41  C41  C  0 1 N N N -6.304  2.375  -86.194 0.717   -3.086 -1.609 C41  N2A 20 
N2A N43  N43  N  0 1 N N N -7.732  2.104  -86.440 -0.538  -2.927 -0.871 N43  N2A 21 
N2A C45  C45  C  0 1 N N N -8.414  1.112  -85.704 -1.273  -1.804 -1.025 C45  N2A 22 
N2A C46  C46  C  0 1 N N N -9.858  0.875  -86.018 -2.485  -1.684 -0.294 C46  N2A 23 
N2A C47  C47  C  0 1 N N N -10.429 1.657  -87.018 -2.853  -2.725 0.540  C47  N2A 24 
N2A N48  N48  N  0 1 N N N -9.689  2.573  -87.657 -2.071  -3.800 0.636  N48  N2A 25 
N2A C49  C49  C  0 1 N N N -8.389  2.791  -87.387 -0.960  -3.903 -0.045 C49  N2A 26 
N2A O56  O56  O  0 1 N N N -7.803  0.468  -84.815 -0.904  -0.915 -1.773 O56  N2A 27 
N2A O58  O58  O  0 1 N N N -5.235  7.006  -79.492 7.081   -1.328 2.557  O58  N2A 28 
N2A C60  C60  C  0 1 Y N N -10.680 -0.150 -85.303 -3.333  -0.475 -0.421 C60  N2A 29 
N2A C62  C62  C  0 1 Y N N -10.089 -1.350 -84.897 -2.857  0.762  0.011  C62  N2A 30 
N2A C63  C63  C  0 1 Y N N -10.818 -2.328 -84.234 -3.651  1.884  -0.110 C63  N2A 31 
N2A C64  C64  C  0 1 Y N N -12.160 -2.147 -83.964 -4.918  1.783  -0.659 C64  N2A 32 
N2A C65  C65  C  0 1 Y N N -12.808 -0.879 -84.397 -5.395  0.557  -1.090 C65  N2A 33 
N2A C66  C66  C  0 1 Y N N -12.038 0.073  -85.055 -4.607  -0.570 -0.980 C66  N2A 34 
N2A CL73 CL73 CL 0 0 N N N -13.050 -3.439 -83.095 -5.911  3.199  -0.807 CL73 N2A 35 
N2A C75  C75  C  0 1 N N N -14.272 -0.605 -84.143 -6.775  0.455  -1.686 C75  N2A 36 
N2A N77  N77  N  0 1 N N N -14.421 0.289  -83.012 -7.776  0.544  -0.620 N77  N2A 37 
N2A C79  C79  C  0 1 N N N -15.442 1.146  -82.899 -9.088  0.476  -0.920 C79  N2A 38 
N2A O81  O81  O  0 1 N N N -16.348 1.227  -83.726 -9.441  0.340  -2.075 O81  N2A 39 
N2A C83  C83  C  0 1 Y N N -15.472 2.069  -81.722 -10.097 0.566  0.155  C83  N2A 40 
N2A C85  C85  C  0 1 Y N N -16.690 2.375  -81.126 -11.457 0.495  -0.152 C85  N2A 41 
N2A C86  C86  C  0 1 Y N N -16.742 3.234  -80.033 -12.394 0.580  0.855  C86  N2A 42 
N2A C87  C87  C  0 1 Y N N -15.569 3.792  -79.543 -11.989 0.734  2.172  C87  N2A 43 
N2A C88  C88  C  0 1 Y N N -14.345 3.488  -80.134 -10.639 0.805  2.483  C88  N2A 44 
N2A C89  C89  C  0 1 Y N N -14.294 2.629  -81.226 -9.694  0.715  1.484  C89  N2A 45 
N2A F96  F96  F  0 1 N N N -15.624 4.621  -78.495 -12.911 0.816  3.155  F96  N2A 46 
N2A H2   H2   H  0 1 N N N -9.912  8.219  -81.301 8.429   1.463  -1.569 H2   N2A 47 
N2A H5   H5   H  0 1 N N N -8.604  9.737  -76.716 11.130  1.871  2.544  H5   N2A 48 
N2A H6   H6   H  0 1 N N N -10.817 10.279 -77.663 11.719  3.173  0.542  H6   N2A 49 
N2A H20  H20  H  0 1 N N N -8.023  7.428  -82.313 6.758   -0.023 -1.160 H20  N2A 50 
N2A H22  H22  H  0 1 N N N -4.917  7.923  -77.171 8.856   0.595  4.597  H22  N2A 51 
N2A H22A H22A H  0 0 N N N -5.746  9.484  -76.852 9.102   -1.135 4.258  H22A N2A 52 
N2A H22B H22B H  0 0 N N N -6.408  7.960  -76.169 10.422  0.024  3.973  H22B N2A 53 
N2A H26  H26  H  0 1 N N N -5.680  8.168  -82.400 7.679   -2.293 -0.864 H26  N2A 54 
N2A H26A H26A H  0 0 N N N -5.159  6.559  -81.797 6.621   -2.553 0.545  H26A N2A 55 
N2A H27  H27  H  0 1 N N N -6.687  7.160  -84.387 5.692   -2.001 -2.310 H27  N2A 56 
N2A H27A H27A H  0 0 N N N -5.015  6.542  -84.238 5.643   -3.578 -1.485 H27A N2A 57 
N2A H29  H29  H  0 1 N N N -7.315  3.570  -82.573 4.271   -0.206 -1.552 H29  N2A 58 
N2A H29A H29A H  0 0 N N N -5.840  4.325  -81.886 3.178   -0.464 -0.171 H29A N2A 59 
N2A H30  H30  H  0 1 N N N -7.544  5.148  -80.506 5.128   -0.666 1.342  H30  N2A 60 
N2A H30A H30A H  0 0 N N N -8.700  5.330  -81.889 5.157   0.892  0.481  H30A N2A 61 
N2A H37  H37  H  0 1 N N N -7.877  4.324  -85.047 3.120   -2.150 -2.494 H37  N2A 62 
N2A H37A H37A H  0 0 N N N -6.424  5.075  -85.780 3.359   -3.746 -1.744 H37A N2A 63 
N2A H39  H39  H  0 1 N N N -4.999  3.300  -84.754 1.936   -3.061 0.168  H39  N2A 64 
N2A H39A H39A H  0 0 N N N -6.471  2.537  -84.054 1.697   -1.464 -0.583 H39A N2A 65 
N2A H41  H41  H  0 1 N N N -5.915  2.982  -87.025 0.654   -2.547 -2.555 H41  N2A 66 
N2A H41A H41A H  0 0 N N N -5.770  1.415  -86.139 0.893   -4.144 -1.804 H41A N2A 67 
N2A H47  H47  H  0 1 N N N -11.469 1.525  -87.279 -3.768  -2.666 1.111  H47  N2A 68 
N2A H49  H49  H  0 1 N N N -7.857  3.543  -87.951 -0.361  -4.796 0.062  H49  N2A 69 
N2A H62  H62  H  0 1 N N N -9.043  -1.520 -85.104 -1.869  0.842  0.440  H62  N2A 70 
N2A H63  H63  H  0 1 N N N -10.330 -3.241 -83.926 -3.283  2.843  0.225  H63  N2A 71 
N2A H66  H66  H  0 1 N N N -12.494 0.997  -85.379 -4.979  -1.525 -1.321 H66  N2A 72 
N2A H75  H75  H  0 1 N N N -14.714 -0.138 -85.036 -6.926  1.269  -2.395 H75  N2A 73 
N2A H75A H75A H  0 0 N N N -14.787 -1.553 -83.927 -6.878  -0.500 -2.202 H75A N2A 74 
N2A HN77 HN77 H  0 0 N N N -13.733 0.264  -82.287 -7.494  0.652  0.302  HN77 N2A 75 
N2A H85  H85  H  0 1 N N N -17.601 1.943  -81.514 -11.774 0.375  -1.178 H85  N2A 76 
N2A H86  H86  H  0 1 N N N -17.689 3.465  -79.568 -13.447 0.526  0.618  H86  N2A 77 
N2A H88  H88  H  0 1 N N N -13.435 3.920  -79.744 -10.329 0.926  3.510  H88  N2A 78 
N2A H89  H89  H  0 1 N N N -13.346 2.396  -81.689 -8.643  0.766  1.728  H89  N2A 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N2A C1  C2   DOUB Y N 1  
N2A C1  C6   SING Y N 2  
N2A C1  CL24 SING N N 3  
N2A C2  C3   SING Y N 4  
N2A C3  C4   DOUB Y N 5  
N2A C3  N15  SING N N 6  
N2A C4  C5   SING Y N 7  
N2A C4  N13  SING N N 8  
N2A C5  C6   DOUB Y N 9  
N2A N13 C14  SING N N 10 
N2A N13 C22  SING N N 11 
N2A C14 N15  SING N N 12 
N2A C14 O58  DOUB N N 13 
N2A N15 C20  SING N N 14 
N2A C20 C26  SING N N 15 
N2A C20 C30  SING N N 16 
N2A C26 C27  SING N N 17 
N2A C27 N28  SING N N 18 
N2A N28 C29  SING N N 19 
N2A N28 C37  SING N N 20 
N2A C29 C30  SING N N 21 
N2A C37 C39  SING N N 22 
N2A C39 C41  SING N N 23 
N2A C41 N43  SING N N 24 
N2A N43 C45  SING N N 25 
N2A N43 C49  SING N N 26 
N2A C45 C46  SING N N 27 
N2A C45 O56  DOUB N N 28 
N2A C46 C47  DOUB N N 29 
N2A C46 C60  SING N N 30 
N2A C47 N48  SING N N 31 
N2A N48 C49  DOUB N N 32 
N2A C60 C62  DOUB Y N 33 
N2A C60 C66  SING Y N 34 
N2A C62 C63  SING Y N 35 
N2A C63 C64  DOUB Y N 36 
N2A C64 C65  SING Y N 37 
N2A C64 CL73 SING N N 38 
N2A C65 C66  DOUB Y N 39 
N2A C65 C75  SING N N 40 
N2A C75 N77  SING N N 41 
N2A N77 C79  SING N N 42 
N2A C79 O81  DOUB N N 43 
N2A C79 C83  SING N N 44 
N2A C83 C85  DOUB Y N 45 
N2A C83 C89  SING Y N 46 
N2A C85 C86  SING Y N 47 
N2A C86 C87  DOUB Y N 48 
N2A C87 C88  SING Y N 49 
N2A C87 F96  SING N N 50 
N2A C88 C89  DOUB Y N 51 
N2A C2  H2   SING N N 52 
N2A C5  H5   SING N N 53 
N2A C6  H6   SING N N 54 
N2A C20 H20  SING N N 55 
N2A C22 H22  SING N N 56 
N2A C22 H22A SING N N 57 
N2A C22 H22B SING N N 58 
N2A C26 H26  SING N N 59 
N2A C26 H26A SING N N 60 
N2A C27 H27  SING N N 61 
N2A C27 H27A SING N N 62 
N2A C29 H29  SING N N 63 
N2A C29 H29A SING N N 64 
N2A C30 H30  SING N N 65 
N2A C30 H30A SING N N 66 
N2A C37 H37  SING N N 67 
N2A C37 H37A SING N N 68 
N2A C39 H39  SING N N 69 
N2A C39 H39A SING N N 70 
N2A C41 H41  SING N N 71 
N2A C41 H41A SING N N 72 
N2A C47 H47  SING N N 73 
N2A C49 H49  SING N N 74 
N2A C62 H62  SING N N 75 
N2A C63 H63  SING N N 76 
N2A C66 H66  SING N N 77 
N2A C75 H75  SING N N 78 
N2A C75 H75A SING N N 79 
N2A N77 HN77 SING N N 80 
N2A C85 H85  SING N N 81 
N2A C86 H86  SING N N 82 
N2A C88 H88  SING N N 83 
N2A C89 H89  SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N2A SMILES           ACDLabs              12.01 "Fc1ccc(cc1)C(=O)NCc2c(Cl)ccc(c2)C3=CN=CN(C3=O)CCCN6CCC(N5c4cc(Cl)ccc4N(C5=O)C)CC6" 
N2A SMILES_CANONICAL CACTVS               3.370 "CN1C(=O)N(C2CCN(CCCN3C=NC=C(C3=O)c4ccc(Cl)c(CNC(=O)c5ccc(F)cc5)c4)CC2)c6cc(Cl)ccc16" 
N2A SMILES           CACTVS               3.370 "CN1C(=O)N(C2CCN(CCCN3C=NC=C(C3=O)c4ccc(Cl)c(CNC(=O)c5ccc(F)cc5)c4)CC2)c6cc(Cl)ccc16" 
N2A SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CN1c2ccc(cc2N(C1=O)C3CCN(CC3)CCCN4C=NC=C(C4=O)c5ccc(c(c5)CNC(=O)c6ccc(cc6)F)Cl)Cl" 
N2A SMILES           "OpenEye OEToolkits" 1.7.0 "CN1c2ccc(cc2N(C1=O)C3CCN(CC3)CCCN4C=NC=C(C4=O)c5ccc(c(c5)CNC(=O)c6ccc(cc6)F)Cl)Cl" 
N2A InChI            InChI                1.03  
"InChI=1S/C34H33Cl2FN6O3/c1-40-30-10-6-25(35)18-31(30)43(34(40)46)27-11-15-41(16-12-27)13-2-14-42-21-38-20-28(33(42)45)23-5-9-29(36)24(17-23)19-39-32(44)22-3-7-26(37)8-4-22/h3-10,17-18,20-21,27H,2,11-16,19H2,1H3,(H,39,44)" 
N2A InChIKey         InChI                1.03  UUSUCXDJVSXCBL-UHFFFAOYSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N2A "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-chloro-5-(1-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-6-oxo-1,6-dihydropyrimidin-5-yl)benzyl]-4-fluorobenzamide" 
N2A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N-[[2-chloro-5-[1-[3-[4-(6-chloro-3-methyl-2-oxo-benzimidazol-1-yl)piperidin-1-yl]propyl]-6-oxo-pyrimidin-5-yl]phenyl]methyl]-4-fluoro-benzamide"                  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N2A "Create component"     2010-04-29 RCSB 
N2A "Modify aromatic_flag" 2011-06-04 RCSB 
N2A "Modify descriptor"    2011-06-04 RCSB 
# 
