data_M7A
#

_chem_comp.id                                   M7A
_chem_comp.name                                 "7-methyl, adenosine-5'-monophosphate"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C11 H18 N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              A
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-09-25
_chem_comp.pdbx_modified_date                   2019-05-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       363.264
_chem_comp.one_letter_code                      A
_chem_comp.three_letter_code                    M7A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6EK0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M7A  "C1'"  C1   C  0  1  N  N  R  236.658  251.762  238.961  -0.655  -0.504   0.308  "C1'"  M7A   1  
M7A  C2     C2   C  0  1  Y  N  N  236.784  250.381  243.247  -4.739  -1.521   0.036  C2     M7A   2  
M7A  "C2'"  C3   C  0  1  N  N  R  237.374  250.579  238.327  -0.604  -1.970  -0.166  "C2'"  M7A   3  
M7A  "C3'"  C4   C  0  1  N  N  S  236.613  250.438  237.022   0.882  -2.198  -0.534  "C3'"  M7A   4  
M7A  C4     C5   C  0  1  Y  N  N  235.878  250.955  241.200  -2.911  -0.161  -0.306  C4     M7A   5  
M7A  "C4'"  C6   C  0  1  N  N  R  236.357  251.880  236.646   1.590  -1.069   0.259  "C4'"  M7A   6  
M7A  C5     C7   C  0  1  Y  N  N  234.553  250.661  241.748  -3.744   0.955  -0.229  C5     M7A   7  
M7A  "C5'"  C8   C  0  1  N  N  N  235.191  252.098  235.734   2.929  -0.713  -0.390  "C5'"  M7A   8  
M7A  C6     C9   C  0  1  Y  N  N  234.442  250.196  243.130  -5.107   0.753  -0.017  C6     M7A   9  
M7A  C8     C10  C  0  1  N  N  N  234.252  251.346  239.546  -1.574   1.694  -0.172  C8     M7A  10  
M7A  C71    C11  C  0  1  N  N  N  232.223  250.767  240.635  -3.370   3.161   0.561  C71    M7A  11  
M7A  N1     N1   N  0  1  Y  N  N  235.599  250.094  243.786  -5.559  -0.493   0.114  N1     M7A  12  
M7A  N3     N2   N  0  1  Y  N  N  236.943  250.803  241.997  -3.445  -1.373  -0.169  N3     M7A  13  
M7A  N6     N3   N  0  1  N  N  N  233.281  249.889  243.725  -5.977   1.834   0.067  N6     M7A  14  
M7A  N7     N4   N  0  1  N  N  N  233.689  250.879  240.771  -2.975   2.121  -0.399  N7     M7A  15  
M7A  N9     N5   N  0  1  N  N  N  235.644  251.349  239.956  -1.599   0.256  -0.522  N9     M7A  16  
M7A  "O2'"  O1   O  0  1  N  N  N  238.711  250.960  238.082  -1.002  -2.850   0.887  "O2'"  M7A  17  
M7A  "O3'"  O2   O  0  1  N  N  N  237.277  249.685  236.036   1.324  -3.484  -0.096  "O3'"  M7A  18  
M7A  "O4'"  O3   O  0  1  N  N  N  236.062  252.502  237.920   0.668   0.040   0.167  "O4'"  M7A  19  
M7A  "O5'"  O4   O  0  1  N  N  N  234.047  251.457  236.259   3.612   0.244   0.423  "O5'"  M7A  20  
M7A  OP1    O5   O  0  1  N  N  N  231.630  250.905  236.433   6.014  -0.265  -0.164  OP1    M7A  21  
M7A  OP2    O6   O  0  1  N  N  N  232.741  251.545  234.180   4.939   1.710  -1.310  OP2    M7A  22  
M7A  P      P1   P  0  1  N  N  N  232.614  251.723  235.656   5.056   0.845   0.043  P      M7A  23  
M7A  H1     H1   H  0  1  N  N  N  237.411  252.383  239.467  -0.964  -0.463   1.352  H1     M7A  24  
M7A  H2     H2   H  0  1  N  N  N  237.665  250.264  243.861  -5.139  -2.518   0.147  H2     M7A  25  
M7A  H3     H3   H  0  1  N  N  N  237.286  249.674  238.947  -1.239  -2.110  -1.041  H3     M7A  26  
M7A  H4     H4   H  0  1  N  N  N  235.643  249.969  237.246   1.041  -2.078  -1.606  H4     M7A  27  
M7A  H5     H5   H  0  1  N  N  N  237.265  252.315  236.204   1.732  -1.362   1.299  H5     M7A  28  
M7A  H6     H6   H  0  1  N  N  N  235.420  251.681  234.742   3.538  -1.612  -0.482  H6     M7A  29  
M7A  H7     H7   H  0  1  N  N  N  234.996  253.177  235.642   2.752  -0.290  -1.379  H7     M7A  30  
M7A  H8     H8   H  0  1  N  N  N  233.894  252.351  239.278  -0.895   2.238  -0.828  H8     M7A  31  
M7A  H9     H9   H  0  1  N  N  N  231.793  250.407  241.581  -2.635   3.965   0.548  H9     M7A  32  
M7A  H10    H10  H  0  1  N  N  N  231.801  251.753  240.393  -4.348   3.557   0.285  H10    M7A  33  
M7A  H11    H11  H  0  1  N  N  N  231.983  250.057  239.830  -3.421   2.731   1.561  H11    M7A  34  
M7A  H12    H12  H  0  1  N  N  N  233.455  249.599  244.666  -5.671   2.722  -0.175  H12    M7A  35  
M7A  H13    H13  H  0  1  N  N  N  232.686  250.693  243.729  -6.890   1.700   0.366  H13    M7A  36  
M7A  H14    H14  H  0  1  N  N  N  239.173  251.044  238.908  -0.989  -3.786   0.643  H14    M7A  37  
M7A  H15    H15  H  0  1  N  N  N  237.400  248.795  236.346   0.847  -4.222  -0.499  H15    M7A  38  
M7A  H17    H17  H  0  1  N  N  N  232.131  250.878  233.887   4.327   2.456  -1.247  H17    M7A  39  
M7A  OP3    OP3  O  0  1  N  Y  N  232.351  253.269  235.961   5.577   1.787   1.239  OP3    M7A  40  
M7A  H18    H18  H  0  1  N  N  N  234.065  250.655  238.711  -1.295   1.830   0.873  H18    M7A  41  
M7A  H16    H16  H  0  1  N  N  N  231.627  253.353  236.570   6.444   2.184   1.078  H16    M7A  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M7A  OP2    P      SING  N  N   1  
M7A  P      "O5'"  SING  N  N   2  
M7A  P      OP1    DOUB  N  N   3  
M7A  "C5'"  "O5'"  SING  N  N   4  
M7A  "C5'"  "C4'"  SING  N  N   5  
M7A  "O3'"  "C3'"  SING  N  N   6  
M7A  "C4'"  "C3'"  SING  N  N   7  
M7A  "C4'"  "O4'"  SING  N  N   8  
M7A  "C3'"  "C2'"  SING  N  N   9  
M7A  "O4'"  "C1'"  SING  N  N  10  
M7A  "O2'"  "C2'"  SING  N  N  11  
M7A  "C2'"  "C1'"  SING  N  N  12  
M7A  "C1'"  N9     SING  N  N  13  
M7A  C8     N9     SING  N  N  14  
M7A  C8     N7     SING  N  N  15  
M7A  N9     C4     SING  N  N  16  
M7A  C71    N7     SING  N  N  17  
M7A  N7     C5     SING  N  N  18  
M7A  C4     C5     DOUB  Y  N  19  
M7A  C4     N3     SING  Y  N  20  
M7A  C5     C6     SING  Y  N  21  
M7A  N3     C2     DOUB  Y  N  22  
M7A  C6     N6     SING  N  N  23  
M7A  C6     N1     DOUB  Y  N  24  
M7A  C2     N1     SING  Y  N  25  
M7A  "C1'"  H1     SING  N  N  26  
M7A  C2     H2     SING  N  N  27  
M7A  "C2'"  H3     SING  N  N  28  
M7A  "C3'"  H4     SING  N  N  29  
M7A  "C4'"  H5     SING  N  N  30  
M7A  "C5'"  H6     SING  N  N  31  
M7A  "C5'"  H7     SING  N  N  32  
M7A  C8     H8     SING  N  N  33  
M7A  C71    H9     SING  N  N  34  
M7A  C71    H10    SING  N  N  35  
M7A  C71    H11    SING  N  N  36  
M7A  N6     H12    SING  N  N  37  
M7A  N6     H13    SING  N  N  38  
M7A  "O2'"  H14    SING  N  N  39  
M7A  "O3'"  H15    SING  N  N  40  
M7A  OP2    H17    SING  N  N  41  
M7A  P      OP3    SING  N  N  42  
M7A  C8     H18    SING  N  N  43  
M7A  OP3    H16    SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M7A  InChI             InChI                 1.03   "InChI=1S/C11H18N5O7P/c1-15-4-16(10-6(15)9(12)13-3-14-10)11-8(18)7(17)5(23-11)2-22-24(19,20)21/h3,5,7-8,11,17-18H,2,4H2,1H3,(H2,12,13,14)(H2,19,20,21)/t5-,7-,8-,11-/m1/s1"  
M7A  InChIKey          InChI                 1.03   FKHMVBQIIIBSCT-IOSLPCCCSA-N  
M7A  SMILES_CANONICAL  CACTVS                3.385  "CN1CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)c3ncnc(N)c13"  
M7A  SMILES            CACTVS                3.385  "CN1CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)c3ncnc(N)c13"  
M7A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CN1CN(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"  
M7A  SMILES            "OpenEye OEToolkits"  2.0.6  "CN1CN(c2c1c(ncn2)N)C3C(C(C(O3)COP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          M7A
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-7-methyl-8~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M7A  "Create component"        2017-09-25  EBI   
M7A  "Initial release"         2018-01-24  RCSB  
M7A  "Modify one letter code"  2019-05-02  EBI   
##
