data_K9A
# 
_chem_comp.id                                    K9A 
_chem_comp.name                                  "5-{4-[3-(2-methylpyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H22 N8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-11-12 
_chem_comp.pdbx_modified_date                    2019-01-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        362.432 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K9A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6N1S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K9A N7  N1  N 0 1 N N N 29.488 95.499  -71.174 7.928  1.674  0.422  N7  K9A 1  
K9A C17 C1  C 0 1 Y N N 30.049 96.468  -71.934 6.647  1.169  0.257  C17 K9A 2  
K9A N4  N2  N 0 1 Y N N 31.377 96.711  -71.830 5.724  1.445  1.165  N4  K9A 3  
K9A C16 C2  C 0 1 Y N N 31.965 97.666  -72.571 4.488  0.982  1.044  C16 K9A 4  
K9A N5  N3  N 0 1 Y N N 29.284 97.189  -72.788 6.378  0.429  -0.808 N5  K9A 5  
K9A C18 C3  C 0 1 Y N N 29.836 98.165  -73.551 5.161  -0.066 -1.000 C18 K9A 6  
K9A N6  N4  N 0 1 N N N 29.029 98.862  -74.392 4.885  -0.846 -2.114 N6  K9A 7  
K9A C15 C4  C 0 1 Y N N 31.209 98.430  -73.463 4.163  0.199  -0.052 C15 K9A 8  
K9A N3  N5  N 0 1 N N N 31.837 99.438  -74.234 2.863  -0.305 -0.216 N3  K9A 9  
K9A C12 C5  C 0 1 N N N 31.550 99.510  -75.671 2.524  -1.248 0.858  C12 K9A 10 
K9A C11 C6  C 0 1 N N N 32.813 99.705  -76.512 1.133  -1.834 0.600  C11 K9A 11 
K9A C13 C7  C 0 1 N N N 32.725 100.395 -73.560 1.880  0.786  -0.285 C13 K9A 12 
K9A C14 C8  C 0 1 N N N 33.616 101.110 -74.582 0.490  0.201  -0.543 C14 K9A 13 
K9A N2  N6  N 0 1 N N N 33.893 100.133 -75.631 0.151  -0.743 0.531  N2  K9A 14 
K9A C9  C9  C 0 1 Y N N 35.175 99.587  -75.811 -1.143 -1.244 0.368  C9  K9A 15 
K9A C8  C10 C 0 1 Y N N 35.440 98.818  -76.946 -1.353 -2.616 0.298  C8  K9A 16 
K9A C7  C11 C 0 1 Y N N 36.696 98.261  -77.150 -2.632 -3.115 0.136  C7  K9A 17 
K9A C6  C12 C 0 1 Y N N 37.695 98.476  -76.205 -3.707 -2.254 0.043  C6  K9A 18 
K9A C10 C13 C 0 1 Y N N 36.181 99.792  -74.867 -2.218 -0.373 0.280  C10 K9A 19 
K9A C5  C14 C 0 1 Y N N 37.448 99.234  -75.056 -3.505 -0.877 0.112  C5  K9A 20 
K9A C3  C15 C 0 1 Y N N 38.455 99.438  -74.113 -4.660 0.050  0.011  C3  K9A 21 
K9A C2  C16 C 0 1 Y N N 39.733 98.891  -74.281 -4.477 1.434  0.071  C2  K9A 22 
K9A N   N7  N 0 1 Y N N 40.683 99.107  -73.351 -5.533 2.224  -0.023 N   K9A 23 
K9A C4  C17 C 0 1 Y N N 38.209 100.203 -72.970 -5.959 -0.437 -0.154 C4  K9A 24 
K9A N1  N8  N 0 1 Y N N 39.181 100.395 -72.063 -6.959 0.424  -0.239 N1  K9A 25 
K9A C1  C18 C 0 1 Y N N 40.414 99.854  -72.247 -6.743 1.722  -0.172 C1  K9A 26 
K9A C   C19 C 0 1 N N N 41.491 100.087 -71.218 -7.916 2.664  -0.275 C   K9A 27 
K9A H1  H1  H 0 1 N N N 28.508 95.449  -71.367 8.138  2.221  1.195  H1  K9A 28 
K9A H2  H2  H 0 1 N N N 29.915 94.620  -71.387 8.615  1.477  -0.233 H2  K9A 29 
K9A H3  H3  H 0 1 N N N 33.026 97.843  -72.476 3.742  1.213  1.791  H3  K9A 30 
K9A H4  H4  H 0 1 N N N 28.091 98.524  -74.312 3.996  -1.212 -2.242 H4  K9A 31 
K9A H5  H5  H 0 1 N N N 29.055 99.832  -74.151 5.581  -1.024 -2.766 H5  K9A 32 
K9A H6  H6  H 0 1 N N N 30.871 100.356 -75.853 3.259  -2.053 0.881  H6  K9A 33 
K9A H7  H7  H 0 1 N N N 31.061 98.574  -75.980 2.527  -0.726 1.815  H7  K9A 34 
K9A H8  H8  H 0 1 N N N 33.085 98.757  -76.999 1.138  -2.379 -0.344 H8  K9A 35 
K9A H9  H9  H 0 1 N N N 32.633 100.473 -77.279 0.868  -2.512 1.411  H9  K9A 36 
K9A H10 H10 H 0 1 N N N 33.359 99.856  -72.841 1.876  1.331  0.659  H10 K9A 37 
K9A H11 H11 H 0 1 N N N 32.116 101.140 -73.026 2.146  1.464  -1.096 H11 K9A 38 
K9A H12 H12 H 0 1 N N N 34.553 101.438 -74.108 -0.245 1.006  -0.566 H12 K9A 39 
K9A H13 H13 H 0 1 N N N 33.092 101.982 -75.001 0.487  -0.321 -1.500 H13 K9A 40 
K9A H14 H14 H 0 1 N N N 34.659 98.654  -77.674 -0.516 -3.294 0.370  H14 K9A 41 
K9A H15 H15 H 0 1 N N N 36.895 97.669  -78.031 -2.790 -4.182 0.083  H15 K9A 42 
K9A H16 H16 H 0 1 N N N 38.676 98.051  -76.361 -4.704 -2.648 -0.084 H16 K9A 43 
K9A H17 H17 H 0 1 N N N 35.980 100.384 -73.987 -2.057 0.694  0.338  H17 K9A 44 
K9A H18 H18 H 0 1 N N N 39.957 98.297  -75.155 -3.489 1.852  0.194  H18 K9A 45 
K9A H19 H19 H 0 1 N N N 37.234 100.641 -72.815 -6.143 -1.499 -0.210 H19 K9A 46 
K9A H20 H20 H 0 1 N N N 42.415 99.579  -71.532 -8.085 2.920  -1.321 H20 K9A 47 
K9A H21 H21 H 0 1 N N N 41.680 101.166 -71.123 -8.805 2.181  0.129  H21 K9A 48 
K9A H22 H22 H 0 1 N N N 41.164 99.686  -70.247 -7.705 3.570  0.292  H22 K9A 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K9A C7  C8  DOUB Y N 1  
K9A C7  C6  SING Y N 2  
K9A C8  C9  SING Y N 3  
K9A C11 C12 SING N N 4  
K9A C11 N2  SING N N 5  
K9A C6  C5  DOUB Y N 6  
K9A C9  N2  SING N N 7  
K9A C9  C10 DOUB Y N 8  
K9A C12 N3  SING N N 9  
K9A N2  C14 SING N N 10 
K9A C5  C10 SING Y N 11 
K9A C5  C3  SING N N 12 
K9A C14 C13 SING N N 13 
K9A N6  C18 SING N N 14 
K9A C2  C3  DOUB Y N 15 
K9A C2  N   SING Y N 16 
K9A N3  C13 SING N N 17 
K9A N3  C15 SING N N 18 
K9A C3  C4  SING Y N 19 
K9A C18 C15 DOUB Y N 20 
K9A C18 N5  SING Y N 21 
K9A C15 C16 SING Y N 22 
K9A N   C1  DOUB Y N 23 
K9A C4  N1  DOUB Y N 24 
K9A N5  C17 DOUB Y N 25 
K9A C16 N4  DOUB Y N 26 
K9A C1  N1  SING Y N 27 
K9A C1  C   SING N N 28 
K9A C17 N4  SING Y N 29 
K9A C17 N7  SING N N 30 
K9A N7  H1  SING N N 31 
K9A N7  H2  SING N N 32 
K9A C16 H3  SING N N 33 
K9A N6  H4  SING N N 34 
K9A N6  H5  SING N N 35 
K9A C12 H6  SING N N 36 
K9A C12 H7  SING N N 37 
K9A C11 H8  SING N N 38 
K9A C11 H9  SING N N 39 
K9A C13 H10 SING N N 40 
K9A C13 H11 SING N N 41 
K9A C14 H12 SING N N 42 
K9A C14 H13 SING N N 43 
K9A C8  H14 SING N N 44 
K9A C7  H15 SING N N 45 
K9A C6  H16 SING N N 46 
K9A C10 H17 SING N N 47 
K9A C2  H18 SING N N 48 
K9A C4  H19 SING N N 49 
K9A C   H20 SING N N 50 
K9A C   H21 SING N N 51 
K9A C   H22 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K9A SMILES           ACDLabs              12.01 "Nc1ncc(c(n1)N)N2CCN(CC2)c3cc(ccc3)c4cnc(nc4)C"                                                                                                
K9A InChI            InChI                1.03  "InChI=1S/C19H22N8/c1-13-22-10-15(11-23-13)14-3-2-4-16(9-14)26-5-7-27(8-6-26)17-12-24-19(21)25-18(17)20/h2-4,9-12H,5-8H2,1H3,(H4,20,21,24,25)" 
K9A InChIKey         InChI                1.03  NLZHOJOCWCLWFT-UHFFFAOYSA-N                                                                                                                    
K9A SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(cn1)c2cccc(c2)N3CCN(CC3)c4cnc(N)nc4N"                                                                                                  
K9A SMILES           CACTVS               3.385 "Cc1ncc(cn1)c2cccc(c2)N3CCN(CC3)c4cnc(N)nc4N"                                                                                                  
K9A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ncc(cn1)c2cccc(c2)N3CCN(CC3)c4cnc(nc4N)N"                                                                                                  
K9A SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ncc(cn1)c2cccc(c2)N3CCN(CC3)c4cnc(nc4N)N"                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
K9A "SYSTEMATIC NAME" ACDLabs              12.01 "5-{4-[3-(2-methylpyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine" 
K9A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-[4-[3-(2-methylpyrimidin-5-yl)phenyl]piperazin-1-yl]pyrimidine-2,4-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K9A "Create component" 2018-11-12 RCSB 
K9A "Initial release"  2019-01-23 RCSB 
# 
