data_JVA
#

_chem_comp.id                                   JVA
_chem_comp.name                                 "2,6-anhydro-5,7-dideoxy-5-fluoro-7-phosphono-D-glycero-D-manno-heptitol"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 F O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-10-01
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       260.154
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JVA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MLW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JVA  C1   C1   C  0  1  N  N  S  26.145  50.955  15.561  -0.031   0.970   0.669  C1   JVA   1  
JVA  C2   C2   C  0  1  N  N  S  25.973  52.205  16.517   1.308   1.669   0.419  C2   JVA   2  
JVA  C3   C3   C  0  1  N  N  S  27.267  53.008  16.489   2.063   0.928  -0.688  C3   JVA   3  
JVA  C4   C4   C  0  1  N  N  S  28.473  52.196  16.905   2.240  -0.538  -0.278  C4   JVA   4  
JVA  C5   C5   C  0  1  N  N  R  28.617  50.911  16.002   0.865  -1.151  -0.002  C5   JVA   5  
JVA  C6   C6   C  0  1  N  N  N  29.935  50.275  16.401   1.036  -2.598   0.466  C6   JVA   6  
JVA  C7   C7   C  0  1  N  N  N  26.196  51.249  14.183  -0.885   1.035  -0.600  C7   JVA   7  
JVA  O3   O3   O  0  1  N  N  N  27.181  54.287  17.220   3.346   1.529  -0.877  O3   JVA   8  
JVA  F2   F2   F  0  1  N  N  N  25.458  51.746  17.684   2.068   1.655   1.594  F2   JVA   9  
JVA  O1P  O1P  O  0  1  N  N  N  24.022  52.946  13.677  -3.297   1.256   0.816  O1P  JVA  10  
JVA  O2P  O2P  O  0  1  N  N  N  23.817  50.557  13.059  -3.386   0.282  -1.624  O2P  JVA  11  
JVA  O3P  O3P  O  0  1  N  N  N  25.276  51.937  11.717  -2.385  -1.036   0.282  O3P  JVA  12  
JVA  O4   O4   O  0  1  N  N  N  29.725  52.950  16.977   2.879  -1.256  -1.336  O4   JVA  13  
JVA  O5   O5   O  0  1  N  N  N  27.345  50.074  15.958   0.203  -0.397   1.015  O5   JVA  14  
JVA  O6   O6   O  0  1  N  N  N  29.749  49.406  17.472  -0.248  -3.207   0.612  O6   JVA  15  
JVA  P    P    P  0  1  N  N  N  24.760  51.738  13.126  -2.533   0.334  -0.260  P    JVA  16  
JVA  H1   H1   H  0  1  N  N  N  25.252  50.336  15.729  -0.555   1.467   1.485  H1   JVA  17  
JVA  H2   H2   H  0  1  N  N  N  25.213  52.838  16.035   1.129   2.699   0.113  H2   JVA  18  
JVA  H3   H3   H  0  1  N  N  N  27.432  53.269  15.433   1.494   0.981  -1.616  H3   JVA  19  
JVA  H4   H4   H  0  1  N  N  N  28.263  51.825  17.919   2.852  -0.593   0.622  H4   JVA  20  
JVA  H5   H5   H  0  1  N  N  N  28.762  51.290  14.980   0.268  -1.133  -0.914  H5   JVA  21  
JVA  H6   H6   H  0  1  N  N  N  30.341  49.715  15.546   1.619  -3.151  -0.270  H6   JVA  22  
JVA  H7   H7   H  0  1  N  N  N  30.644  51.063  16.693   1.555  -2.611   1.424  H7   JVA  23  
JVA  H8   H8   H  0  1  N  N  N  26.609  50.346  13.710  -0.990   2.073  -0.914  H8   JVA  24  
JVA  H9   H9   H  0  1  N  N  N  26.918  52.074  14.090  -0.403   0.462  -1.392  H9   JVA  25  
JVA  H10  H10  H  0  1  N  N  N  28.015  54.740  17.167   3.309   2.461  -1.132  H10  JVA  26  
JVA  H11  H11  H  0  1  N  N  N  24.012  53.636  13.024  -3.430   2.170   0.527  H11  JVA  27  
JVA  H12  H12  H  0  1  N  N  N  23.778  50.233  12.167  -4.276  -0.081  -1.518  H12  JVA  28  
JVA  H13  H13  H  0  1  N  N  N  29.603  53.715  17.527   3.755  -0.917  -1.567  H13  JVA  29  
JVA  H14  H14  H  0  1  N  N  N  30.581  49.015  17.711  -0.216  -4.127   0.907  H14  JVA  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JVA  O3P  P    DOUB  N  N   1  
JVA  O2P  P    SING  N  N   2  
JVA  P    O1P  SING  N  N   3  
JVA  P    C7   SING  N  N   4  
JVA  C7   C1   SING  N  N   5  
JVA  C1   O5   SING  N  N   6  
JVA  C1   C2   SING  N  N   7  
JVA  O5   C5   SING  N  N   8  
JVA  C5   C6   SING  N  N   9  
JVA  C5   C4   SING  N  N  10  
JVA  C6   O6   SING  N  N  11  
JVA  C3   C2   SING  N  N  12  
JVA  C3   C4   SING  N  N  13  
JVA  C3   O3   SING  N  N  14  
JVA  C2   F2   SING  N  N  15  
JVA  C4   O4   SING  N  N  16  
JVA  C1   H1   SING  N  N  17  
JVA  C2   H2   SING  N  N  18  
JVA  C3   H3   SING  N  N  19  
JVA  C4   H4   SING  N  N  20  
JVA  C5   H5   SING  N  N  21  
JVA  C6   H6   SING  N  N  22  
JVA  C6   H7   SING  N  N  23  
JVA  C7   H8   SING  N  N  24  
JVA  C7   H9   SING  N  N  25  
JVA  O3   H10  SING  N  N  26  
JVA  O1P  H11  SING  N  N  27  
JVA  O2P  H12  SING  N  N  28  
JVA  O4   H13  SING  N  N  29  
JVA  O6   H14  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JVA  SMILES            ACDLabs               12.01  "C1(OC(C(C(C1F)O)O)CO)CP(O)(O)=O"  
JVA  InChI             InChI                 1.03   "InChI=1S/C7H14FO7P/c8-5-4(2-16(12,13)14)15-3(1-9)6(10)7(5)11/h3-7,9-11H,1-2H2,(H2,12,13,14)/t3-,4-,5-,6-,7-/m1/s1"  
JVA  InChIKey          InChI                 1.03   CDQMFQZEPGCBTC-NYMZXIIRSA-N  
JVA  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](C[P](O)(O)=O)[C@@H](F)[C@@H](O)[C@@H]1O"  
JVA  SMILES            CACTVS                3.385  "OC[CH]1O[CH](C[P](O)(O)=O)[CH](F)[CH](O)[CH]1O"  
JVA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)CP(=O)(O)O)F)O)O)O"  
JVA  SMILES            "OpenEye OEToolkits"  2.0.6  "C(C1C(C(C(C(O1)CP(=O)(O)O)F)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JVA  "SYSTEMATIC NAME"  ACDLabs               12.01  "2,6-anhydro-5,7-dideoxy-5-fluoro-7-phosphono-D-glycero-D-manno-heptitol"  
JVA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{S},3~{S},4~{S},5~{S},6~{R})-3-fluoranyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methylphosphonic acid"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
JVA  "CARBOHYDRATE ISOMER"  D         PDB  ?  
JVA  "CARBOHYDRATE RING"    pyranose  PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JVA  "Create component"      2018-10-01  RCSB  
JVA  "Initial release"       2019-07-31  RCSB  
JVA  "Other modification"    2020-07-03  RCSB  
JVA  "Modify internal type"  2020-07-17  RCSB  
JVA  "Modify linking type"   2020-07-17  RCSB  
##
